Wall clock time and date at job start Wed Apr 1 2020 02:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00550 * 2 1 4 4 H 1.48499 * 109.47474 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46871 * 300.00255 * 3 2 1 6 6 H 1.48498 * 109.47039 * 60.00050 * 3 2 1 7 7 C 1.38814 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00337 * 163.06904 * 7 2 1 9 9 N 1.36936 * 120.00133 * 343.06978 * 7 2 1 10 10 C 1.46930 * 120.62745 * 331.84883 * 9 7 2 11 11 C 1.53198 * 108.77596 * 233.58488 * 10 9 7 12 12 C 1.53036 * 109.31287 * 305.36859 * 11 10 9 13 13 N 1.46498 * 109.45933 * 181.38633 * 12 11 10 14 14 C 1.34775 * 119.99837 * 155.24736 * 13 12 11 15 15 O 1.21277 * 120.00720 * 359.72539 * 14 13 12 16 16 C 1.50704 * 119.99949 * 179.72095 * 14 13 12 17 17 C 1.52996 * 109.47289 * 179.97438 * 16 14 13 18 18 H 1.08997 * 109.34033 * 305.32358 * 17 16 14 19 19 O 1.42728 * 109.34040 * 65.00238 * 17 16 14 20 20 C 1.43215 * 113.12126 * 172.00715 * 19 17 16 21 21 C 1.52965 * 108.48190 * 289.28609 * 20 19 17 22 22 C 1.50747 * 109.76269 * 49.16083 * 21 20 19 23 23 C 1.38596 * 118.76226 * 163.18996 * 22 21 20 24 24 C 1.38074 * 120.28036 * 179.79449 * 23 22 21 25 25 C 1.38262 * 119.85609 * 359.97438 * 24 23 22 26 26 C 1.38049 * 119.89765 * 0.09053 * 25 24 23 27 27 C 1.37895 * 121.35731 * 343.13982 * 22 21 20 28 28 C 1.53042 * 109.53047 * 61.36896 * 12 11 10 29 29 C 1.46927 * 120.63455 * 151.82859 * 9 7 2 30 30 H 0.97006 * 119.99529 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.58632 * 113.79842 * 10 9 7 32 32 H 1.08992 * 109.70274 * 353.44523 * 10 9 7 33 33 H 1.08994 * 109.49550 * 185.41183 * 11 10 9 34 34 H 1.09002 * 109.49532 * 65.31691 * 11 10 9 35 35 H 1.09005 * 109.46134 * 301.35443 * 12 11 10 36 36 H 0.97000 * 119.99866 * 334.96692 * 13 12 11 37 37 H 1.09002 * 109.47271 * 300.00617 * 16 14 13 38 38 H 1.09009 * 109.47044 * 59.99990 * 16 14 13 39 39 H 1.09006 * 109.63252 * 48.98945 * 20 19 17 40 40 H 1.09003 * 109.63304 * 169.58733 * 20 19 17 41 41 H 1.09005 * 109.42174 * 169.24896 * 21 20 19 42 42 H 1.08992 * 109.42567 * 289.07217 * 21 20 19 43 43 H 1.08009 * 119.86167 * 359.80069 * 23 22 21 44 44 H 1.07996 * 120.07168 * 179.97438 * 24 23 22 45 45 H 1.08004 * 120.04488 * 180.02562 * 25 24 23 46 46 H 1.08006 * 119.84528 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.49256 * 58.57841 * 28 12 11 48 48 H 1.08997 * 109.49712 * 178.67549 * 28 12 11 49 49 H 1.09004 * 109.58320 * 246.20365 * 29 9 7 50 50 H 1.09001 * 109.58333 * 6.47805 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0550 -1.2224 -0.2729 9 7 1.3700 -2.3625 0.3443 10 6 0.2260 -2.3408 1.2660 11 6 0.4973 -3.3209 2.4119 12 6 0.8118 -4.7021 1.8327 13 7 1.0393 -5.6496 2.9266 14 6 0.8406 -6.9678 2.7284 15 8 0.4687 -7.3692 1.6461 16 6 1.0807 -7.9433 3.8518 17 6 0.7832 -9.3634 3.3665 18 1 -0.2269 -9.4013 2.9588 19 8 1.7175 -9.7205 2.3484 20 6 1.6303 -11.0970 1.9627 21 6 2.1677 -11.9565 3.1082 22 6 1.5296 -11.5325 4.4065 23 6 1.5990 -12.3882 5.4945 24 6 1.0290 -12.0295 6.6998 25 6 0.3866 -10.8113 6.8220 26 6 0.3159 -9.9590 5.7383 27 6 0.8858 -10.3190 4.5269 28 6 2.0673 -4.6178 0.9617 29 6 1.8136 -3.6528 -0.2007 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6772 -2.6410 0.7346 32 1 0.0967 -1.3359 1.6676 33 1 -0.3833 -3.3861 3.0509 34 1 1.3471 -2.9698 2.9973 35 1 -0.0284 -5.0417 1.2269 36 1 1.3368 -5.3287 3.7922 37 1 2.1204 -7.8789 4.1730 38 1 0.4262 -7.7013 4.6893 39 1 0.5901 -11.3571 1.7663 40 1 2.2283 -11.2649 1.0670 41 1 1.9355 -13.0039 2.9153 42 1 3.2483 -11.8327 3.1782 43 1 2.1013 -13.3396 5.3992 44 1 1.0847 -12.6991 7.5453 45 1 -0.0599 -10.5274 7.7635 46 1 -0.1865 -9.0077 5.8346 47 1 2.9020 -4.2544 1.5609 48 1 2.3043 -5.6064 0.5685 49 1 1.0399 -4.0599 -0.8518 50 1 2.7330 -3.5126 -0.7693 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609644130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:09 Heat of formation + Delta-G solvation = -42.067754 kcal Electronic energy + Delta-G solvation = -30008.163111 eV Core-core repulsion = 26000.229526 eV Total energy + Delta-G solvation = -4007.933585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.80766 -39.48105 -37.78764 -37.17964 -34.36319 -33.97389 -32.54528 -32.05978 -30.45314 -30.02461 -29.45745 -28.44380 -25.25434 -24.37378 -24.00956 -22.49405 -22.16024 -21.53138 -20.32699 -20.03911 -19.19616 -17.69120 -17.05106 -16.73852 -16.40965 -16.00127 -15.74958 -15.47027 -14.84740 -14.78191 -14.52218 -14.33451 -13.93232 -13.74137 -13.52049 -13.50677 -13.39449 -13.00731 -12.82627 -12.63919 -12.54631 -12.29599 -12.27017 -12.00665 -11.62721 -11.42586 -11.24150 -11.09062 -10.85306 -10.81621 -10.71576 -10.44077 -10.22950 -10.00467 -9.84271 -9.76896 -9.63933 -9.40152 -9.09963 -8.92341 -8.63298 -8.43420 -6.65975 -5.77888 -3.19833 0.96515 1.01456 2.88460 3.30199 3.37612 3.45170 3.45955 3.48251 3.60466 4.30425 4.32302 4.46765 4.51021 4.57675 4.76400 4.78972 4.92411 4.95959 5.06455 5.08261 5.20552 5.24548 5.34289 5.37184 5.48156 5.50362 5.55174 5.59370 5.64040 5.64962 5.69235 5.75597 5.93122 6.08925 6.12296 6.15743 6.23941 6.32544 6.39383 6.56532 6.62895 6.63358 6.64079 6.84494 6.98758 7.00175 7.04010 7.34234 7.62397 7.79248 7.83513 8.46461 8.51066 9.22723 9.86037 10.43333 11.31066 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027117 B = 0.001994 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.327688 B =14037.527664 C =14590.797763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.152 3.848 13 N -0.727 5.727 14 C 0.511 3.489 15 O -0.530 6.530 16 C -0.135 4.135 17 C 0.149 3.851 18 H 0.080 0.920 19 O -0.354 6.354 20 C 0.060 3.940 21 C -0.117 4.117 22 C -0.070 4.070 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.111 4.111 27 C -0.113 4.113 28 C -0.138 4.138 29 C 0.147 3.853 30 H 0.253 0.747 31 H 0.020 0.980 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.394 0.606 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.055 0.945 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.020 0.980 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 -24.959 14.629 28.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.049 3.951 13 N -0.378 5.378 14 C 0.297 3.703 15 O -0.406 6.406 16 C -0.174 4.174 17 C 0.090 3.910 18 H 0.097 0.903 19 O -0.272 6.272 20 C -0.017 4.017 21 C -0.155 4.155 22 C -0.070 4.070 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.140 4.140 26 C -0.129 4.129 27 C -0.113 4.113 28 C -0.179 4.179 29 C 0.021 3.979 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.227 0.773 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.144 0.856 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.038 0.962 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.290 -24.957 13.721 28.509 hybrid contribution 0.420 0.748 0.764 1.149 sum 1.709 -24.208 14.485 28.263 Atomic orbital electron populations 1.70038 1.05244 1.25362 1.54172 1.25060 0.95308 0.98431 1.01012 0.86225 0.79370 0.83958 0.77245 1.20270 1.21752 1.21595 1.19237 0.92594 0.84739 1.41366 0.91617 1.44105 1.35818 1.01692 1.49980 1.20735 0.88896 0.97889 0.87714 1.22528 1.00440 0.94871 1.00769 1.21006 0.98426 0.88171 0.87525 1.46340 1.69192 1.06535 1.15720 1.20341 0.77603 0.82989 0.89396 1.90717 1.45600 1.78097 1.26143 1.21819 1.05082 0.92404 0.98140 1.20508 0.94153 0.90908 0.85396 0.90251 1.88189 1.58115 1.25705 1.55235 1.22586 1.00969 0.81649 0.96493 1.21187 1.01181 1.00484 0.92602 1.19532 0.97912 0.93771 0.95805 1.21080 1.00371 0.99524 0.92768 1.21127 0.98187 0.96841 0.97482 1.21112 0.99747 0.94445 0.98715 1.21104 0.99595 0.99917 0.92269 1.20277 0.99307 0.95652 0.96069 1.22360 0.97156 0.99541 0.98813 1.20878 0.97850 0.86515 0.92706 0.93689 0.96165 0.89078 0.92823 0.92234 0.90156 0.77256 0.88037 0.87589 0.92647 0.88206 0.89787 0.89617 0.86019 0.86013 0.85849 0.85600 0.92445 0.92639 0.96222 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 11.19 55.49 0.62 -25.61 16 2 C 0.00 0.01 4.92 -17.43 -0.09 -0.08 16 3 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -15.01 2.99 -172.31 -0.52 -15.53 16 10 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 11 C -0.15 -2.69 5.55 -26.61 -0.15 -2.84 16 12 C 0.15 2.69 2.41 -67.89 -0.16 2.53 16 13 N -0.73 -10.21 5.08 -53.77 -0.27 -10.48 16 14 C 0.51 7.44 7.67 -10.98 -0.08 7.35 16 15 O -0.53 -9.91 15.07 -9.00 -0.14 -10.05 16 16 C -0.13 -1.40 5.11 -27.88 -0.14 -1.55 16 17 C 0.15 1.70 2.28 -27.90 -0.06 1.63 16 18 H 0.08 0.98 7.94 -51.93 -0.41 0.57 16 19 O -0.35 -4.66 9.66 -49.79 -0.48 -5.14 16 20 C 0.06 0.58 6.85 37.14 0.25 0.84 16 21 C -0.12 -0.93 6.00 -27.88 -0.17 -1.10 16 22 C -0.07 -0.65 5.78 -104.59 -0.60 -1.25 16 23 C -0.12 -0.94 9.67 -39.51 -0.38 -1.32 16 24 C -0.12 -0.86 10.05 -39.63 -0.40 -1.26 16 25 C -0.12 -0.91 10.05 -39.64 -0.40 -1.31 16 26 C -0.11 -0.93 9.08 -39.50 -0.36 -1.29 16 27 C -0.11 -1.11 5.46 -104.62 -0.57 -1.68 16 28 C -0.14 -2.62 5.65 -26.61 -0.15 -2.77 16 29 C 0.15 3.25 6.52 -3.71 -0.02 3.23 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.61 7.58 -51.93 -0.39 1.21 16 36 H 0.39 4.36 8.60 -40.82 -0.35 4.01 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.11 0.80 6.29 -51.92 -0.33 0.47 16 39 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 44 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 46 H 0.13 0.84 6.45 -52.48 -0.34 0.50 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 LS Contribution 393.55 15.07 5.93 5.93 Total: -1.00 -33.45 393.55 -11.55 -44.99 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -8.01 Total: 3.03 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -3.65 Total: -3.80 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.17 Total: -51.62 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.62 Total: -15.19 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.45 -11.55 -44.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609644130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.926 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds