Wall clock time and date at job start Wed Apr 1 2020 02:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00550 * 2 1 4 4 H 1.48499 * 109.47474 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46871 * 300.00255 * 3 2 1 6 6 H 1.48498 * 109.47039 * 60.00050 * 3 2 1 7 7 C 1.38814 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00337 * 163.06904 * 7 2 1 9 9 N 1.36936 * 120.00133 * 343.06978 * 7 2 1 10 10 C 1.46930 * 120.62745 * 331.84883 * 9 7 2 11 11 C 1.53198 * 108.77596 * 233.58488 * 10 9 7 12 12 C 1.53036 * 109.31287 * 305.36859 * 11 10 9 13 13 N 1.46498 * 109.45933 * 181.38633 * 12 11 10 14 14 C 1.34775 * 119.99837 * 155.24736 * 13 12 11 15 15 O 1.21277 * 120.00720 * 359.72539 * 14 13 12 16 16 C 1.50704 * 119.99949 * 179.72095 * 14 13 12 17 17 C 1.52996 * 109.47289 * 179.97438 * 16 14 13 18 18 H 1.08997 * 109.34033 * 305.32358 * 17 16 14 19 19 O 1.42728 * 109.34040 * 65.00238 * 17 16 14 20 20 C 1.43215 * 113.12126 * 172.00715 * 19 17 16 21 21 C 1.52965 * 108.48190 * 289.28609 * 20 19 17 22 22 C 1.50747 * 109.76269 * 49.16083 * 21 20 19 23 23 C 1.38596 * 118.76226 * 163.18996 * 22 21 20 24 24 C 1.38074 * 120.28036 * 179.79449 * 23 22 21 25 25 C 1.38262 * 119.85609 * 359.97438 * 24 23 22 26 26 C 1.38049 * 119.89765 * 0.09053 * 25 24 23 27 27 C 1.37895 * 121.35731 * 343.13982 * 22 21 20 28 28 C 1.53042 * 109.53047 * 61.36896 * 12 11 10 29 29 C 1.46927 * 120.63455 * 151.82859 * 9 7 2 30 30 H 0.97006 * 119.99529 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.58632 * 113.79842 * 10 9 7 32 32 H 1.08992 * 109.70274 * 353.44523 * 10 9 7 33 33 H 1.08994 * 109.49550 * 185.41183 * 11 10 9 34 34 H 1.09002 * 109.49532 * 65.31691 * 11 10 9 35 35 H 1.09005 * 109.46134 * 301.35443 * 12 11 10 36 36 H 0.97000 * 119.99866 * 334.96692 * 13 12 11 37 37 H 1.09002 * 109.47271 * 300.00617 * 16 14 13 38 38 H 1.09009 * 109.47044 * 59.99990 * 16 14 13 39 39 H 1.09006 * 109.63252 * 48.98945 * 20 19 17 40 40 H 1.09003 * 109.63304 * 169.58733 * 20 19 17 41 41 H 1.09005 * 109.42174 * 169.24896 * 21 20 19 42 42 H 1.08992 * 109.42567 * 289.07217 * 21 20 19 43 43 H 1.08009 * 119.86167 * 359.80069 * 23 22 21 44 44 H 1.07996 * 120.07168 * 179.97438 * 24 23 22 45 45 H 1.08004 * 120.04488 * 180.02562 * 25 24 23 46 46 H 1.08006 * 119.84528 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.49256 * 58.57841 * 28 12 11 48 48 H 1.08997 * 109.49712 * 178.67549 * 28 12 11 49 49 H 1.09004 * 109.58320 * 246.20365 * 29 9 7 50 50 H 1.09001 * 109.58333 * 6.47805 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0550 -1.2224 -0.2729 9 7 1.3700 -2.3625 0.3443 10 6 0.2260 -2.3408 1.2660 11 6 0.4973 -3.3209 2.4119 12 6 0.8118 -4.7021 1.8327 13 7 1.0393 -5.6496 2.9266 14 6 0.8406 -6.9678 2.7284 15 8 0.4687 -7.3692 1.6461 16 6 1.0807 -7.9433 3.8518 17 6 0.7832 -9.3634 3.3665 18 1 -0.2269 -9.4013 2.9588 19 8 1.7175 -9.7205 2.3484 20 6 1.6303 -11.0970 1.9627 21 6 2.1677 -11.9565 3.1082 22 6 1.5296 -11.5325 4.4065 23 6 1.5990 -12.3882 5.4945 24 6 1.0290 -12.0295 6.6998 25 6 0.3866 -10.8113 6.8220 26 6 0.3159 -9.9590 5.7383 27 6 0.8858 -10.3190 4.5269 28 6 2.0673 -4.6178 0.9617 29 6 1.8136 -3.6528 -0.2007 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6772 -2.6410 0.7346 32 1 0.0967 -1.3359 1.6676 33 1 -0.3833 -3.3861 3.0509 34 1 1.3471 -2.9698 2.9973 35 1 -0.0284 -5.0417 1.2269 36 1 1.3368 -5.3287 3.7922 37 1 2.1204 -7.8789 4.1730 38 1 0.4262 -7.7013 4.6893 39 1 0.5901 -11.3571 1.7663 40 1 2.2283 -11.2649 1.0670 41 1 1.9355 -13.0039 2.9153 42 1 3.2483 -11.8327 3.1782 43 1 2.1013 -13.3396 5.3992 44 1 1.0847 -12.6991 7.5453 45 1 -0.0599 -10.5274 7.7635 46 1 -0.1865 -9.0077 5.8346 47 1 2.9020 -4.2544 1.5609 48 1 2.3043 -5.6064 0.5685 49 1 1.0399 -4.0599 -0.8518 50 1 2.7330 -3.5126 -0.7693 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609644130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:08 Heat of formation + Delta-G solvation = -61.651889 kcal Electronic energy + Delta-G solvation = -30009.012343 eV Core-core repulsion = 26000.229526 eV Total energy + Delta-G solvation = -4008.782817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.58411 -40.65565 -38.98581 -38.34300 -35.96460 -34.74894 -33.91422 -33.16938 -31.87005 -31.38818 -30.70918 -29.35554 -26.95495 -25.37129 -24.72028 -23.96694 -23.64172 -22.65008 -21.30346 -20.98276 -20.81065 -18.90354 -18.38616 -17.77455 -17.39518 -17.09013 -16.82993 -16.56039 -16.23838 -15.86634 -15.59772 -15.36464 -15.27966 -15.12694 -14.82034 -14.57476 -14.44016 -14.26240 -14.15215 -14.00660 -13.46935 -13.29062 -13.22870 -13.04482 -12.98163 -12.63603 -12.62746 -12.52150 -12.37229 -12.20702 -11.99700 -11.88039 -11.85362 -11.54447 -11.53943 -11.34608 -10.80687 -10.57207 -10.53988 -9.94933 -9.69389 -9.53533 -8.71439 -7.88351 -5.34259 0.36802 0.45279 1.47418 1.49109 1.60202 1.74479 2.23021 2.51571 2.74017 2.87909 3.27325 3.54834 3.65846 3.66672 3.82570 3.87595 3.92615 4.02916 4.08233 4.15411 4.24664 4.30525 4.33348 4.34630 4.45035 4.46353 4.61024 4.63695 4.64527 4.68999 4.81598 4.83771 4.86806 4.89969 4.97773 5.05209 5.06239 5.09422 5.15856 5.17718 5.29172 5.46817 5.52306 5.60911 5.61428 5.64097 5.64502 5.71032 6.08623 6.21197 6.38473 6.68306 7.13877 7.38489 7.83065 8.36432 9.18922 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027117 B = 0.001994 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.327688 B =14037.527664 C =14590.797763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.286 1.286 7 C -0.262 4.262 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.163 3.837 13 N -0.714 5.714 14 C 0.510 3.490 15 O -0.576 6.576 16 C -0.123 4.123 17 C 0.148 3.852 18 H 0.059 0.941 19 O -0.385 6.385 20 C 0.052 3.948 21 C -0.111 4.111 22 C -0.088 4.088 23 C -0.126 4.126 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.118 4.118 27 C -0.130 4.130 28 C -0.123 4.123 29 C 0.145 3.855 30 H 0.251 0.749 31 H -0.007 1.007 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.414 0.586 37 H 0.116 0.884 38 H 0.141 0.859 39 H 0.051 0.949 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.140 0.860 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.141 0.859 47 H 0.065 0.935 48 H 0.055 0.945 49 H 0.005 0.995 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 -26.183 17.520 31.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.392 4.392 8 H 0.084 0.916 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.058 3.942 13 N -0.366 5.366 14 C 0.297 3.703 15 O -0.455 6.455 16 C -0.162 4.162 17 C 0.090 3.910 18 H 0.077 0.923 19 O -0.304 6.304 20 C -0.024 4.024 21 C -0.148 4.148 22 C -0.088 4.088 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.145 4.145 26 C -0.136 4.136 27 C -0.131 4.131 28 C -0.163 4.163 29 C 0.019 3.981 30 H 0.060 0.940 31 H 0.011 0.989 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.250 0.750 37 H 0.134 0.866 38 H 0.158 0.842 39 H 0.069 0.931 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.158 0.842 44 H 0.163 0.837 45 H 0.163 0.837 46 H 0.159 0.841 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.023 0.977 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.493 -26.206 16.655 31.151 hybrid contribution 0.016 1.047 -0.189 1.064 sum 2.509 -25.159 16.466 30.173 Atomic orbital electron populations 1.70194 1.06699 1.25901 1.55383 1.25841 0.96093 1.01589 1.01127 0.85170 0.78575 0.79628 0.76820 1.19104 1.22136 1.21285 1.19548 0.92847 0.85807 1.41047 0.91555 1.44361 1.35984 1.02157 1.50769 1.20576 0.87634 0.97826 0.88810 1.22245 1.02004 0.93611 0.98830 1.20586 0.96849 0.88528 0.88200 1.46060 1.68996 1.05985 1.15569 1.21067 0.76185 0.83240 0.89789 1.90706 1.47577 1.78806 1.28373 1.21848 1.06675 0.90552 0.97140 1.20474 0.92852 0.91905 0.85757 0.92342 1.88129 1.58665 1.27511 1.56115 1.22760 1.01099 0.80827 0.97720 1.21148 1.01028 1.01104 0.91498 1.19767 0.98355 0.94029 0.96689 1.21337 1.00432 1.00043 0.92587 1.21490 0.97261 0.97146 0.97971 1.21436 0.99428 0.94320 0.99300 1.21322 0.99426 1.00870 0.91947 1.20213 1.00942 0.95877 0.96026 1.22149 0.97974 0.98370 0.97792 1.20955 0.97232 0.86056 0.93898 0.93992 0.98884 0.91793 0.90325 0.91097 0.92741 0.74956 0.86630 0.84172 0.93064 0.87488 0.87756 0.89447 0.84214 0.83750 0.83675 0.84118 0.91592 0.92619 0.97697 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.62 11.19 21.65 0.24 -55.38 16 2 C -0.05 -2.87 4.92 84.86 0.42 -2.46 16 3 Si 0.97 44.86 29.59 68.60 2.03 46.89 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.26 -14.61 9.58 84.03 0.81 -13.81 16 8 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 9 N -0.61 -31.38 2.99 -699.08 -2.09 -33.47 16 10 C 0.18 8.60 5.30 86.36 0.46 9.06 16 11 C -0.13 -4.55 5.55 30.67 0.17 -4.38 16 12 C 0.16 5.67 2.41 45.02 0.11 5.78 16 13 N -0.71 -18.71 5.08 -442.41 -2.25 -20.95 16 14 C 0.51 14.30 7.67 87.66 0.67 14.97 16 15 O -0.58 -21.85 15.07 10.90 0.16 -21.69 16 16 C -0.12 -2.33 5.11 29.85 0.15 -2.18 16 17 C 0.15 3.32 2.28 29.84 0.07 3.39 16 18 H 0.06 1.50 7.94 -2.39 -0.02 1.48 16 19 O -0.39 -10.21 9.66 -135.06 -1.30 -11.52 16 20 C 0.05 1.02 6.85 71.97 0.49 1.51 16 21 C -0.11 -1.65 6.00 29.85 0.18 -1.47 16 22 C -0.09 -1.51 5.78 -19.85 -0.11 -1.62 16 23 C -0.13 -1.69 9.67 22.32 0.22 -1.47 16 24 C -0.12 -1.41 10.05 22.24 0.22 -1.18 16 25 C -0.13 -1.52 10.05 22.23 0.22 -1.30 16 26 C -0.12 -1.69 9.08 22.32 0.20 -1.49 16 27 C -0.13 -2.40 5.46 -19.86 -0.11 -2.51 16 28 C -0.12 -4.58 5.65 30.67 0.17 -4.41 16 29 C 0.14 6.51 6.52 86.36 0.56 7.07 16 30 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 31 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 32 H 0.06 3.44 6.06 -2.39 -0.01 3.43 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.05 2.21 7.58 -2.38 -0.02 2.20 16 36 H 0.41 7.81 8.60 -92.71 -0.80 7.01 16 37 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.14 1.65 6.29 -2.38 -0.01 1.64 16 39 H 0.05 1.00 8.07 -2.38 -0.02 0.98 16 40 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 44 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 46 H 0.14 1.45 6.45 -2.91 -0.02 1.43 16 47 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 50 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 Total: -1.00 -74.78 393.55 1.84 -72.94 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.14 Total: 19.67 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 4.90 Total: 3.51 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -4.10 Total: -109.80 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -1.14 Total: -33.21 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -74.78 1.84 -72.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609644130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.288 kcal (2) G-P(sol) polarization free energy of solvation -74.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds