Wall clock time and date at job start Wed Apr 1 2020 02:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 119.99983 * 2 1 4 4 H 1.48511 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47330 * 299.99612 * 3 2 1 6 6 H 1.48505 * 109.47378 * 60.00160 * 3 2 1 7 7 C 1.38817 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99834 * 161.87179 * 7 2 1 9 9 N 1.36931 * 119.99940 * 341.87158 * 7 2 1 10 10 C 1.46934 * 120.62782 * 147.11140 * 9 7 2 11 11 C 1.53621 * 108.54157 * 126.36701 * 10 9 7 12 12 C 1.53044 * 109.24093 * 54.85611 * 11 10 9 13 13 N 1.46504 * 109.45849 * 178.48586 * 12 11 10 14 14 C 1.34769 * 120.00659 * 275.06751 * 13 12 11 15 15 O 1.21284 * 119.99795 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00665 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.47634 * 186.54191 * 16 14 13 18 18 H 1.09006 * 109.43065 * 305.85020 * 17 16 14 19 19 C 1.53066 * 109.43523 * 65.71420 * 17 16 14 20 20 C 1.53410 * 108.30132 * 168.25899 * 19 17 16 21 21 O 1.42829 * 108.37484 * 295.29437 * 20 19 17 22 22 C 1.35839 * 117.85720 * 49.20062 * 21 20 19 23 23 C 1.39144 * 118.49504 * 163.02509 * 22 21 20 24 24 C 1.37971 * 120.21671 * 179.56131 * 23 22 21 25 25 C 1.38285 * 119.95523 * 0.03727 * 24 23 22 26 26 C 1.38108 * 119.98479 * 0.06501 * 25 24 23 27 27 C 1.38376 * 121.80559 * 342.74006 * 22 21 20 28 28 C 1.53038 * 109.54074 * 298.50951 * 12 11 10 29 29 C 1.46927 * 120.63303 * 327.38950 * 9 7 2 30 30 H 0.96994 * 119.99651 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.58356 * 246.19535 * 10 9 7 32 32 H 1.09001 * 109.58485 * 6.63022 * 10 9 7 33 33 H 1.09000 * 109.63903 * 294.86924 * 11 10 9 34 34 H 1.08998 * 109.45865 * 174.73705 * 11 10 9 35 35 H 1.08999 * 109.44843 * 58.52887 * 12 11 10 36 36 H 0.97005 * 119.99714 * 95.07074 * 13 12 11 37 37 H 1.09004 * 109.46812 * 306.54437 * 16 14 13 38 38 H 1.08997 * 109.46903 * 66.53759 * 16 14 13 39 39 H 1.08993 * 109.70456 * 287.96578 * 19 17 16 40 40 H 1.09007 * 109.69543 * 48.56180 * 19 17 16 41 41 H 1.09002 * 109.68397 * 175.57062 * 20 19 17 42 42 H 1.08997 * 109.71231 * 55.03232 * 20 19 17 43 43 H 1.07999 * 119.89177 * 359.60249 * 23 22 21 44 44 H 1.07998 * 120.02462 * 180.02562 * 24 23 22 45 45 H 1.08003 * 120.01189 * 180.09031 * 25 24 23 46 46 H 1.08003 * 119.84042 * 179.97438 * 26 25 24 47 47 H 1.09006 * 109.49696 * 301.41323 * 28 12 11 48 48 H 1.08996 * 109.50082 * 181.32058 * 28 12 11 49 49 H 1.09002 * 109.58661 * 353.37689 * 29 9 7 50 50 H 1.09002 * 109.58460 * 113.65685 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0500 -1.2256 -0.2905 9 7 1.3765 -2.3585 0.3700 10 6 1.7417 -3.6418 -0.2453 11 6 2.0747 -4.6421 0.8720 12 6 0.8950 -4.7243 1.8434 13 7 1.1929 -5.7040 2.8912 14 6 0.9457 -7.0120 2.6808 15 8 0.4770 -7.3782 1.6239 16 6 1.2516 -8.0197 3.7588 17 6 1.0352 -9.4325 3.2127 18 1 0.0295 -9.5115 2.7998 19 6 2.0604 -9.7157 2.1120 20 6 2.0201 -11.2151 1.7903 21 8 2.4518 -11.9352 2.9458 22 6 1.8855 -11.6188 4.1392 23 6 2.0114 -12.5186 5.1931 24 6 1.4578 -12.2290 6.4233 25 6 0.7747 -11.0414 6.6107 26 6 0.6460 -10.1469 5.5663 27 6 1.1992 -10.4323 4.3291 28 6 0.6594 -3.3527 2.4800 29 6 0.3143 -2.3385 1.3849 30 1 -0.4849 0.8400 -0.0004 31 1 0.9051 -4.0149 -0.8361 32 1 2.6124 -3.5049 -0.8865 33 1 2.9643 -4.3104 1.4074 34 1 2.2570 -5.6248 0.4371 35 1 0.0002 -5.0321 1.3024 36 1 1.5681 -5.4112 3.7365 37 1 2.2882 -7.9079 4.0770 38 1 0.5906 -7.8537 4.6094 39 1 1.8099 -9.1417 1.2200 40 1 3.0568 -9.4409 2.4585 41 1 2.6858 -11.4293 0.9542 42 1 1.0023 -11.5088 1.5338 43 1 2.5447 -13.4464 5.0479 44 1 1.5577 -12.9295 7.2392 45 1 0.3422 -10.8131 7.5737 46 1 0.1116 -9.2202 5.7152 47 1 1.5625 -3.0331 3.0002 48 1 -0.1658 -3.4175 3.1891 49 1 0.2429 -1.3415 1.8196 50 1 -0.6367 -2.6050 0.9238 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609786103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:10 Heat of formation + Delta-G solvation = -42.230663 kcal Electronic energy + Delta-G solvation = -30016.765101 eV Core-core repulsion = 26008.824452 eV Total energy + Delta-G solvation = -4007.940649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.14975 -39.70238 -37.73734 -37.47106 -35.35870 -34.37881 -32.21377 -30.96402 -30.55406 -30.27439 -29.80697 -28.77597 -25.30161 -24.42936 -23.83975 -22.64517 -22.27065 -21.69151 -20.26655 -19.98721 -19.25387 -18.15420 -17.35563 -16.88333 -16.56835 -16.01755 -15.80851 -15.52187 -15.05277 -14.78241 -14.49556 -14.28001 -14.01529 -13.82988 -13.61003 -13.55824 -13.40850 -13.17511 -12.88430 -12.82527 -12.67504 -12.39251 -12.06562 -11.81144 -11.55884 -11.45854 -11.21881 -11.14711 -10.93937 -10.88706 -10.76375 -10.57007 -10.51066 -10.30255 -10.09581 -9.88893 -9.73577 -9.47035 -9.06053 -8.73669 -8.49246 -8.40707 -6.65731 -5.83551 -3.29186 1.02471 1.15790 2.72815 3.05390 3.29087 3.34541 3.42554 3.44930 3.49987 4.29959 4.33516 4.46721 4.48694 4.55531 4.79938 4.88858 4.93498 4.99663 5.03436 5.11514 5.18587 5.25221 5.30304 5.36042 5.45189 5.48530 5.51877 5.57017 5.57992 5.71464 5.83714 5.89316 5.95639 6.02883 6.04246 6.20280 6.23332 6.25816 6.30484 6.48008 6.51234 6.51834 6.55875 6.78207 6.88115 6.97280 7.20376 7.23056 7.49073 7.68664 7.79329 8.35787 8.44004 9.17426 9.79804 10.40195 11.25037 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027345 B = 0.001980 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.702960 B =14137.216901 C =14668.225238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.007 3.993 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.257 4.257 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.147 3.853 11 C -0.138 4.138 12 C 0.151 3.849 13 N -0.724 5.724 14 C 0.510 3.490 15 O -0.542 6.542 16 C -0.134 4.134 17 C -0.028 4.028 18 H 0.095 0.905 19 C -0.157 4.157 20 C 0.062 3.938 21 O -0.319 6.319 22 C 0.136 3.864 23 C -0.152 4.152 24 C -0.090 4.090 25 C -0.154 4.154 26 C -0.085 4.085 27 C -0.153 4.153 28 C -0.146 4.146 29 C 0.178 3.822 30 H 0.254 0.746 31 H 0.020 0.980 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.396 0.604 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.123 0.877 46 H 0.126 0.874 47 H 0.060 0.940 48 H 0.054 0.946 49 H 0.080 0.920 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.507 -23.096 13.097 26.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.193 4.193 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.387 4.387 8 H 0.081 0.919 9 N -0.314 5.314 10 C 0.020 3.980 11 C -0.178 4.178 12 C 0.048 3.952 13 N -0.374 5.374 14 C 0.296 3.704 15 O -0.419 6.419 16 C -0.174 4.174 17 C -0.047 4.047 18 H 0.113 0.887 19 C -0.195 4.195 20 C -0.012 4.012 21 O -0.233 6.233 22 C 0.091 3.909 23 C -0.171 4.171 24 C -0.108 4.108 25 C -0.172 4.172 26 C -0.103 4.103 27 C -0.154 4.154 28 C -0.186 4.186 29 C 0.051 3.949 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.229 0.771 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.126 0.874 42 H 0.084 0.916 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.099 0.901 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.203 -23.332 12.253 26.446 hybrid contribution 0.433 1.284 0.464 1.432 sum 2.636 -22.048 12.717 25.589 Atomic orbital electron populations 1.70062 1.05363 1.25560 1.53143 1.25170 0.95223 0.98637 1.00243 0.86271 0.79526 0.83943 0.77301 1.20166 1.21658 1.21512 1.19155 0.92821 0.84892 1.41852 0.91851 1.44055 1.42629 1.02527 1.42173 1.20974 0.97961 0.86488 0.92540 1.22438 0.97593 0.99445 0.98341 1.21029 0.98632 0.87535 0.88051 1.46381 1.64995 1.06813 1.19228 1.20531 0.77930 0.83287 0.88664 1.90677 1.44439 1.79574 1.27231 1.21798 1.04128 0.93262 0.98229 1.19743 1.01177 0.91066 0.92671 0.88723 1.22375 0.99633 0.96500 1.00979 1.23017 1.01033 0.91267 0.85915 1.85977 1.62009 1.61109 1.14219 1.18717 0.93654 0.92515 0.86050 1.20604 1.04578 0.99625 0.92256 1.20922 0.96677 0.96965 0.96212 1.21028 1.01928 0.95038 0.99212 1.20979 0.98133 0.99388 0.91823 1.19852 1.03423 0.95472 0.96641 1.22516 1.00871 0.94993 1.00224 1.20637 0.90219 0.96861 0.87198 0.93624 0.96182 0.92546 0.92403 0.92852 0.90057 0.77115 0.88909 0.88494 0.87934 0.90837 0.87383 0.91631 0.85379 0.85564 0.85907 0.85650 0.92149 0.92782 0.90124 0.95927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.84 11.63 55.49 0.65 -25.20 16 2 C 0.01 0.19 4.84 -17.43 -0.08 0.10 16 3 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.26 -6.99 9.52 -15.06 -0.14 -7.13 16 8 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 9 N -0.59 -14.60 2.96 -172.05 -0.51 -15.11 16 10 C 0.15 3.14 6.54 -3.48 -0.02 3.12 16 11 C -0.14 -2.45 5.67 -26.39 -0.15 -2.60 16 12 C 0.15 2.52 2.41 -67.89 -0.16 2.35 16 13 N -0.72 -9.38 5.08 -53.77 -0.27 -9.65 16 14 C 0.51 6.61 7.47 -10.99 -0.08 6.53 16 15 O -0.54 -8.93 13.97 5.55 0.08 -8.86 16 16 C -0.13 -1.25 4.85 -27.88 -0.14 -1.39 16 17 C -0.03 -0.28 2.02 -91.71 -0.18 -0.47 16 18 H 0.09 1.07 7.83 -51.93 -0.41 0.66 16 19 C -0.16 -1.60 5.08 -26.48 -0.13 -1.74 16 20 C 0.06 0.57 7.03 37.37 0.26 0.84 16 21 O -0.32 -3.49 10.27 -19.24 -0.20 -3.69 16 22 C 0.14 1.44 6.47 -39.19 -0.25 1.19 16 23 C -0.15 -1.40 9.94 -39.34 -0.39 -1.79 16 24 C -0.09 -0.70 10.04 -39.66 -0.40 -1.09 16 25 C -0.15 -1.20 10.04 -39.61 -0.40 -1.60 16 26 C -0.09 -0.73 9.08 -39.53 -0.36 -1.09 16 27 C -0.15 -1.52 5.43 -104.44 -0.57 -2.09 16 28 C -0.15 -2.58 5.55 -26.61 -0.15 -2.73 16 29 C 0.18 4.08 5.29 -3.71 -0.02 4.06 16 30 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 36 H 0.40 4.06 8.60 -40.82 -0.35 3.71 16 37 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.10 0.73 6.25 -51.93 -0.32 0.40 16 39 H 0.10 1.20 6.57 -51.93 -0.34 0.85 16 40 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 41 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 44 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 46 H 0.13 0.87 6.37 -52.48 -0.33 0.54 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.08 2.05 6.46 -51.93 -0.34 1.72 16 50 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 391.35 15.07 5.90 5.90 Total: -1.00 -31.69 391.35 -10.70 -42.39 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.94 Total: 3.40 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -3.37 Total: -5.51 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.14 Total: -49.96 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.12 Total: -12.54 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.69 -10.70 -42.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609786103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.158 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds