Wall clock time and date at job start Wed Apr 1 2020 02:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 119.99983 * 2 1 4 4 H 1.48511 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47330 * 299.99612 * 3 2 1 6 6 H 1.48505 * 109.47378 * 60.00160 * 3 2 1 7 7 C 1.38817 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99834 * 161.87179 * 7 2 1 9 9 N 1.36931 * 119.99940 * 341.87158 * 7 2 1 10 10 C 1.46934 * 120.62782 * 147.11140 * 9 7 2 11 11 C 1.53621 * 108.54157 * 126.36701 * 10 9 7 12 12 C 1.53044 * 109.24093 * 54.85611 * 11 10 9 13 13 N 1.46504 * 109.45849 * 178.48586 * 12 11 10 14 14 C 1.34769 * 120.00659 * 275.06751 * 13 12 11 15 15 O 1.21284 * 119.99795 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00665 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.47634 * 186.54191 * 16 14 13 18 18 H 1.09006 * 109.43065 * 305.85020 * 17 16 14 19 19 C 1.53066 * 109.43523 * 65.71420 * 17 16 14 20 20 C 1.53410 * 108.30132 * 168.25899 * 19 17 16 21 21 O 1.42829 * 108.37484 * 295.29437 * 20 19 17 22 22 C 1.35839 * 117.85720 * 49.20062 * 21 20 19 23 23 C 1.39144 * 118.49504 * 163.02509 * 22 21 20 24 24 C 1.37971 * 120.21671 * 179.56131 * 23 22 21 25 25 C 1.38285 * 119.95523 * 0.03727 * 24 23 22 26 26 C 1.38108 * 119.98479 * 0.06501 * 25 24 23 27 27 C 1.38376 * 121.80559 * 342.74006 * 22 21 20 28 28 C 1.53038 * 109.54074 * 298.50951 * 12 11 10 29 29 C 1.46927 * 120.63303 * 327.38950 * 9 7 2 30 30 H 0.96994 * 119.99651 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.58356 * 246.19535 * 10 9 7 32 32 H 1.09001 * 109.58485 * 6.63022 * 10 9 7 33 33 H 1.09000 * 109.63903 * 294.86924 * 11 10 9 34 34 H 1.08998 * 109.45865 * 174.73705 * 11 10 9 35 35 H 1.08999 * 109.44843 * 58.52887 * 12 11 10 36 36 H 0.97005 * 119.99714 * 95.07074 * 13 12 11 37 37 H 1.09004 * 109.46812 * 306.54437 * 16 14 13 38 38 H 1.08997 * 109.46903 * 66.53759 * 16 14 13 39 39 H 1.08993 * 109.70456 * 287.96578 * 19 17 16 40 40 H 1.09007 * 109.69543 * 48.56180 * 19 17 16 41 41 H 1.09002 * 109.68397 * 175.57062 * 20 19 17 42 42 H 1.08997 * 109.71231 * 55.03232 * 20 19 17 43 43 H 1.07999 * 119.89177 * 359.60249 * 23 22 21 44 44 H 1.07998 * 120.02462 * 180.02562 * 24 23 22 45 45 H 1.08003 * 120.01189 * 180.09031 * 25 24 23 46 46 H 1.08003 * 119.84042 * 179.97438 * 26 25 24 47 47 H 1.09006 * 109.49696 * 301.41323 * 28 12 11 48 48 H 1.08996 * 109.50082 * 181.32058 * 28 12 11 49 49 H 1.09002 * 109.58661 * 353.37689 * 29 9 7 50 50 H 1.09002 * 109.58460 * 113.65685 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0500 -1.2256 -0.2905 9 7 1.3765 -2.3585 0.3700 10 6 1.7417 -3.6418 -0.2453 11 6 2.0747 -4.6421 0.8720 12 6 0.8950 -4.7243 1.8434 13 7 1.1929 -5.7040 2.8912 14 6 0.9457 -7.0120 2.6808 15 8 0.4770 -7.3782 1.6239 16 6 1.2516 -8.0197 3.7588 17 6 1.0352 -9.4325 3.2127 18 1 0.0295 -9.5115 2.7998 19 6 2.0604 -9.7157 2.1120 20 6 2.0201 -11.2151 1.7903 21 8 2.4518 -11.9352 2.9458 22 6 1.8855 -11.6188 4.1392 23 6 2.0114 -12.5186 5.1931 24 6 1.4578 -12.2290 6.4233 25 6 0.7747 -11.0414 6.6107 26 6 0.6460 -10.1469 5.5663 27 6 1.1992 -10.4323 4.3291 28 6 0.6594 -3.3527 2.4800 29 6 0.3143 -2.3385 1.3849 30 1 -0.4849 0.8400 -0.0004 31 1 0.9051 -4.0149 -0.8361 32 1 2.6124 -3.5049 -0.8865 33 1 2.9643 -4.3104 1.4074 34 1 2.2570 -5.6248 0.4371 35 1 0.0002 -5.0321 1.3024 36 1 1.5681 -5.4112 3.7365 37 1 2.2882 -7.9079 4.0770 38 1 0.5906 -7.8537 4.6094 39 1 1.8099 -9.1417 1.2200 40 1 3.0568 -9.4409 2.4585 41 1 2.6858 -11.4293 0.9542 42 1 1.0023 -11.5088 1.5338 43 1 2.5447 -13.4464 5.0479 44 1 1.5577 -12.9295 7.2392 45 1 0.3422 -10.8131 7.5737 46 1 0.1116 -9.2202 5.7152 47 1 1.5625 -3.0331 3.0002 48 1 -0.1658 -3.4175 3.1891 49 1 0.2429 -1.3415 1.8196 50 1 -0.6367 -2.6050 0.9238 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609786103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:09 Heat of formation + Delta-G solvation = -60.539984 kcal Electronic energy + Delta-G solvation = -30017.559053 eV Core-core repulsion = 26008.824452 eV Total energy + Delta-G solvation = -4008.734601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.90105 -40.81027 -38.99968 -38.39713 -36.34143 -35.75987 -33.94736 -31.94668 -31.63354 -31.38311 -31.12260 -29.84787 -26.96147 -25.40033 -24.63791 -23.97793 -23.65623 -22.90373 -21.33960 -20.99943 -20.61348 -18.93690 -18.77582 -18.04737 -17.46064 -17.19211 -16.78496 -16.70402 -16.38060 -15.82183 -15.59019 -15.38844 -15.32571 -15.04732 -14.83574 -14.76320 -14.38308 -14.22753 -14.19068 -14.04921 -13.85401 -13.46682 -13.20054 -13.06173 -12.73736 -12.66104 -12.52309 -12.51854 -12.27336 -12.21555 -12.00917 -11.91955 -11.90555 -11.66135 -11.54287 -11.34050 -11.26232 -10.73617 -10.58613 -9.96529 -9.71626 -9.08947 -8.67245 -7.90636 -5.40225 0.38901 0.50907 1.45906 1.48170 1.59061 1.70345 2.22077 2.37889 2.50073 2.84527 3.24797 3.51579 3.62053 3.65236 3.73578 3.86475 3.88355 4.03703 4.09642 4.20262 4.27854 4.31254 4.32921 4.35095 4.45247 4.47599 4.54575 4.63135 4.63327 4.71339 4.80866 4.82364 4.83951 4.86887 5.03548 5.04909 5.08957 5.13403 5.15113 5.18654 5.29044 5.40485 5.41246 5.56404 5.59550 5.64076 5.64396 5.66379 5.91732 6.38909 6.50077 6.65766 7.12867 7.34561 7.80945 8.37068 9.15980 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027345 B = 0.001980 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.702960 B =14137.216901 C =14668.225238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.045 4.045 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.287 1.287 7 C -0.268 4.268 8 H 0.064 0.936 9 N -0.608 5.608 10 C 0.144 3.856 11 C -0.122 4.122 12 C 0.163 3.837 13 N -0.713 5.713 14 C 0.510 3.490 15 O -0.579 6.579 16 C -0.122 4.122 17 C -0.025 4.025 18 H 0.078 0.922 19 C -0.154 4.154 20 C 0.061 3.939 21 O -0.333 6.333 22 C 0.110 3.890 23 C -0.165 4.165 24 C -0.089 4.089 25 C -0.154 4.154 26 C -0.091 4.091 27 C -0.163 4.163 28 C -0.128 4.128 29 C 0.181 3.819 30 H 0.251 0.749 31 H 0.005 0.995 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.414 0.586 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.124 0.876 42 H 0.064 0.936 43 H 0.135 0.865 44 H 0.152 0.848 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.052 0.948 50 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.634 -24.014 15.855 29.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.242 4.242 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.398 4.398 8 H 0.082 0.918 9 N -0.331 5.331 10 C 0.018 3.982 11 C -0.162 4.162 12 C 0.058 3.942 13 N -0.364 5.364 14 C 0.298 3.702 15 O -0.459 6.459 16 C -0.161 4.161 17 C -0.044 4.044 18 H 0.096 0.904 19 C -0.191 4.191 20 C -0.013 4.013 21 O -0.247 6.247 22 C 0.065 3.935 23 C -0.183 4.183 24 C -0.106 4.106 25 C -0.172 4.172 26 C -0.109 4.109 27 C -0.164 4.164 28 C -0.167 4.167 29 C 0.055 3.945 30 H 0.060 0.940 31 H 0.023 0.977 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.250 0.750 37 H 0.130 0.870 38 H 0.141 0.859 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.141 0.859 42 H 0.082 0.918 43 H 0.152 0.848 44 H 0.170 0.830 45 H 0.165 0.835 46 H 0.161 0.839 47 H 0.090 0.910 48 H 0.096 0.904 49 H 0.070 0.930 50 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 3.356 -24.278 15.049 28.760 hybrid contribution 0.043 1.480 -0.421 1.539 sum 3.398 -22.798 14.628 27.300 Atomic orbital electron populations 1.70206 1.06839 1.26060 1.54633 1.25940 0.95975 1.01789 1.00451 0.85225 0.78742 0.79690 0.76849 1.18982 1.22054 1.21301 1.19464 0.93030 0.86007 1.41275 0.91838 1.44320 1.42720 1.03001 1.43088 1.21062 0.97262 0.86133 0.93776 1.22223 0.98230 0.98380 0.97361 1.20588 0.97120 0.87879 0.88613 1.46098 1.65056 1.06250 1.19043 1.21163 0.76728 0.83440 0.88890 1.90678 1.46011 1.80105 1.29120 1.21780 1.05811 0.91235 0.97322 1.19661 1.00098 0.91806 0.92838 0.90427 1.22293 0.99637 0.96829 1.00358 1.23091 1.01463 0.90678 0.86091 1.85953 1.62510 1.61549 1.14713 1.19032 0.94738 0.93435 0.86277 1.20856 1.05019 0.99837 0.92632 1.21277 0.95640 0.97475 0.96252 1.21384 1.01215 0.94611 1.00004 1.21240 0.97880 1.00349 0.91398 1.19860 1.04175 0.95299 0.97090 1.22234 1.02200 0.93759 0.98547 1.20478 0.88905 0.96970 0.88132 0.93961 0.97694 0.92620 0.91591 0.92211 0.92560 0.74977 0.87035 0.85874 0.89737 0.90818 0.85853 0.91765 0.84757 0.83034 0.83469 0.83924 0.91030 0.90391 0.92976 0.98695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.06 11.63 21.65 0.25 -54.81 16 2 C -0.05 -2.51 4.84 84.86 0.41 -2.10 16 3 Si 0.97 44.26 29.59 68.60 2.03 46.29 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 6 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.27 -14.66 9.52 84.04 0.80 -13.86 16 8 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 9 N -0.61 -30.52 2.96 -698.24 -2.07 -32.59 16 10 C 0.14 6.22 6.54 86.51 0.57 6.79 16 11 C -0.12 -4.22 5.67 30.82 0.17 -4.05 16 12 C 0.16 5.26 2.41 45.02 0.11 5.37 16 13 N -0.71 -16.74 5.08 -442.41 -2.25 -18.98 16 14 C 0.51 12.32 7.47 87.66 0.65 12.98 16 15 O -0.58 -18.93 13.97 -3.04 -0.04 -18.97 16 16 C -0.12 -1.96 4.85 29.85 0.14 -1.81 16 17 C -0.03 -0.48 2.02 -11.50 -0.02 -0.51 16 18 H 0.08 1.74 7.83 -2.38 -0.02 1.72 16 19 C -0.15 -3.08 5.08 30.75 0.16 -2.92 16 20 C 0.06 1.13 7.03 72.12 0.51 1.63 16 21 O -0.33 -7.18 10.27 -91.74 -0.94 -8.12 16 22 C 0.11 2.24 6.47 22.52 0.15 2.38 16 23 C -0.16 -2.79 9.94 22.42 0.22 -2.57 16 24 C -0.09 -1.14 10.04 22.22 0.22 -0.91 16 25 C -0.15 -1.90 10.04 22.25 0.22 -1.67 16 26 C -0.09 -1.31 9.08 22.30 0.20 -1.10 16 27 C -0.16 -2.99 5.43 -19.75 -0.11 -3.10 16 28 C -0.13 -4.35 5.55 30.67 0.17 -4.18 16 29 C 0.18 8.52 5.29 86.36 0.46 8.98 16 30 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 2.14 7.58 -2.39 -0.02 2.13 16 36 H 0.41 6.95 8.60 -92.70 -0.80 6.16 16 37 H 0.11 1.45 8.09 -2.39 -0.02 1.43 16 38 H 0.12 1.37 6.25 -2.39 -0.01 1.35 16 39 H 0.08 2.00 6.57 -2.39 -0.02 1.99 16 40 H 0.07 1.44 8.07 -2.38 -0.02 1.42 16 41 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 45 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 46 H 0.14 1.46 6.37 -2.91 -0.02 1.44 16 47 H 0.07 2.31 8.14 -2.38 -0.02 2.30 16 48 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.05 2.73 6.46 -2.39 -0.02 2.71 16 50 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 Total: -1.00 -70.64 391.35 2.17 -68.47 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.15 Total: 19.37 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 5.04 Total: -0.67 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -4.06 Total: -106.38 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.98 Total: -27.09 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -70.64 2.17 -68.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609786103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.931 kcal (2) G-P(sol) polarization free energy of solvation -70.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds