Wall clock time and date at job start Wed Apr 1 2020 03:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.50698 * 109.47286 * 106.84794 * 3 2 1 5 5 C 1.38262 * 119.94246 * 269.72588 * 4 3 2 6 6 C 1.38146 * 120.05636 * 179.72382 * 5 4 3 7 7 C 1.38740 * 119.94437 * 0.57060 * 6 5 4 8 8 O 1.35892 * 120.05620 * 179.68171 * 7 6 5 9 9 C 1.42898 * 117.00211 * 0.02562 * 8 7 6 10 10 C 1.53002 * 109.47023 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47195 * 304.99747 * 10 9 8 12 12 O 1.42901 * 109.47200 * 64.99980 * 10 9 8 13 13 C 1.53004 * 109.46992 * 184.99895 * 10 9 8 14 14 N 1.46499 * 109.46879 * 180.02562 * 13 10 9 15 15 C 1.36938 * 120.00432 * 89.99982 * 14 13 10 16 16 H 1.08002 * 120.00114 * 217.15639 * 15 14 13 17 17 C 1.38807 * 119.99791 * 37.15737 * 15 14 13 18 18 N 1.31619 * 120.00427 * 21.27017 * 17 15 14 19 19 Si 1.86807 * 119.99816 * 201.27302 * 17 15 14 20 20 H 1.48503 * 109.46909 * 89.99873 * 19 17 15 21 21 H 1.48501 * 109.46887 * 209.99766 * 19 17 15 22 22 H 1.48489 * 109.47009 * 329.99751 * 19 17 15 23 23 C 1.46507 * 119.99774 * 269.99633 * 14 13 10 24 24 C 1.54267 * 110.03227 * 241.38262 * 23 14 13 25 25 C 1.54964 * 104.15853 * 217.13841 * 24 23 14 26 26 C 1.54885 * 102.77814 * 37.88694 * 25 24 23 27 27 C 1.53878 * 110.03134 * 124.16628 * 23 14 13 28 28 C 1.38734 * 119.88235 * 359.70207 * 7 6 5 29 29 C 1.38143 * 119.94690 * 0.02562 * 28 7 6 30 30 H 1.09003 * 109.47461 * 226.84635 * 3 2 1 31 31 H 1.09002 * 109.47589 * 346.84426 * 3 2 1 32 32 H 1.07999 * 119.97526 * 359.97438 * 5 4 3 33 33 H 1.08003 * 120.02988 * 180.24801 * 6 5 4 34 34 H 1.09001 * 109.47112 * 299.99629 * 9 8 7 35 35 H 1.09000 * 109.47559 * 60.00194 * 9 8 7 36 36 H 0.96698 * 114.00394 * 59.99786 * 12 10 9 37 37 H 1.09000 * 109.47030 * 299.99954 * 13 10 9 38 38 H 1.09001 * 109.47355 * 60.00192 * 13 10 9 39 39 H 0.96998 * 120.00656 * 174.94332 * 18 17 15 40 40 H 1.08994 * 110.01723 * 2.77791 * 23 14 13 41 41 H 1.08998 * 110.48747 * 335.78646 * 24 23 14 42 42 H 1.09001 * 110.48449 * 98.42582 * 24 23 14 43 43 H 1.09004 * 110.71972 * 279.56960 * 25 24 23 44 44 H 1.09002 * 110.92132 * 156.30085 * 25 24 23 45 45 H 1.09002 * 110.48270 * 203.40123 * 26 25 24 46 46 H 1.09002 * 110.59898 * 80.82192 * 26 25 24 47 47 H 1.08996 * 110.02890 * 238.57253 * 27 23 14 48 48 H 1.09005 * 110.02883 * 0.02562 * 27 23 14 49 49 H 1.07997 * 120.02484 * 179.97438 * 28 7 6 50 50 H 1.07997 * 119.97125 * 180.02562 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1101 0.4127 -1.3598 5 6 3.3460 -0.5458 -2.3279 6 6 3.8009 -0.1703 -3.5771 7 6 4.0324 1.1689 -3.8560 8 8 4.4861 1.5403 -5.0819 9 6 4.7027 0.4991 -6.0363 10 6 5.2085 1.1056 -7.3468 11 1 4.5090 1.8690 -7.6877 12 8 6.4921 1.6965 -7.1341 13 6 5.3216 0.0079 -8.4066 14 7 5.8065 0.5885 -9.6612 15 6 7.1512 0.6512 -9.9120 16 1 7.5655 1.5065 -10.4253 17 6 7.9819 -0.3844 -9.5068 18 7 7.4794 -1.5784 -9.2737 19 14 9.8130 -0.0835 -9.2919 20 1 10.0834 0.3477 -7.8969 21 1 10.5572 -1.3368 -9.5757 22 1 10.2538 0.9777 -10.2324 23 6 4.8526 1.1020 -10.6475 24 6 4.9858 0.3181 -11.9694 25 6 4.7711 1.3891 -13.0686 26 6 5.4873 2.6307 -12.4816 27 6 5.1709 2.5719 -10.9730 28 6 3.8003 2.1282 -2.8810 29 6 3.3400 1.7480 -1.6352 30 1 2.9710 0.7037 0.7497 31 1 2.9718 -0.9999 0.2339 32 1 3.1706 -1.5887 -2.1087 33 1 3.9812 -0.9190 -4.3343 34 1 5.4439 -0.2002 -5.6493 35 1 3.7660 -0.0279 -6.2181 36 1 7.1661 1.0738 -6.8290 37 1 6.0210 -0.7555 -8.0657 38 1 4.3425 -0.4428 -8.5689 39 1 8.0682 -2.3196 -9.0620 40 1 3.8362 1.0164 -10.2633 41 1 5.9797 -0.1212 -12.0540 42 1 4.2196 -0.4546 -12.0335 43 1 3.7088 1.5874 -13.2115 44 1 5.2349 1.0829 -14.0063 45 1 5.0869 3.5448 -12.9201 46 1 6.5626 2.5678 -12.6487 47 1 4.3087 3.1994 -10.7475 48 1 6.0354 2.9030 -10.3974 49 1 3.9801 3.1713 -3.0955 50 1 3.1588 2.4944 -0.8760 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610012829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:39 Heat of formation + Delta-G solvation = -26.322647 kcal Electronic energy + Delta-G solvation = -29755.291779 eV Core-core repulsion = 25748.040952 eV Total energy + Delta-G solvation = -4007.250826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.25385 -38.37626 -37.77669 -36.71466 -36.08273 -33.79780 -32.52469 -31.28238 -31.14087 -29.79589 -27.84973 -27.48266 -26.63255 -25.56997 -23.33375 -22.41929 -21.51390 -20.71517 -19.89856 -19.10451 -18.30129 -17.83705 -16.79546 -16.14040 -16.07694 -15.83155 -15.44293 -15.01087 -14.76116 -14.68322 -14.32859 -14.19754 -14.00318 -13.70309 -13.52918 -13.43911 -13.10401 -13.01092 -12.83540 -12.63984 -12.51026 -12.20041 -11.88762 -11.59866 -11.37366 -11.18767 -11.02731 -10.91750 -10.77467 -10.74623 -10.45179 -10.34404 -10.28853 -10.16040 -10.04719 -9.92553 -9.86834 -9.53571 -9.23027 -9.15951 -8.51558 -8.21020 -6.53868 -5.83392 -3.34494 1.17176 1.20498 2.51820 2.52039 3.26574 3.35127 3.42310 3.45566 3.47243 3.95558 4.44709 4.51101 4.56627 4.74854 4.90150 5.05097 5.07835 5.15684 5.20146 5.25927 5.31777 5.40382 5.45459 5.47496 5.50567 5.55283 5.66923 5.83615 5.87444 6.06203 6.11725 6.16014 6.25508 6.28216 6.29395 6.32079 6.32886 6.46332 6.54378 6.60462 6.62389 6.62592 6.74352 6.85834 6.97776 7.22149 7.29539 7.33728 7.44904 7.48917 7.86176 8.46592 8.53640 9.15838 9.78148 10.35751 11.19570 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013824 B = 0.002367 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.952072 B =11827.167176 C =12849.624236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.210 3.790 3 C 0.025 3.975 4 C -0.148 4.148 5 C -0.063 4.063 6 C -0.212 4.212 7 C 0.147 3.853 8 O -0.302 6.302 9 C 0.026 3.974 10 C 0.092 3.908 11 H 0.086 0.914 12 O -0.538 6.538 13 C 0.120 3.880 14 N -0.566 5.566 15 C -0.226 4.226 16 H 0.061 0.939 17 C 0.006 3.994 18 N -0.898 5.898 19 Si 0.895 3.105 20 H -0.286 1.286 21 H -0.295 1.295 22 H -0.279 1.279 23 C 0.170 3.830 24 C -0.129 4.129 25 C -0.124 4.124 26 C -0.117 4.117 27 C -0.134 4.134 28 C -0.157 4.157 29 C -0.066 4.066 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.367 0.633 37 H 0.103 0.897 38 H 0.032 0.968 39 H 0.254 0.746 40 H 0.046 0.954 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.062 0.938 47 H 0.042 0.958 48 H 0.076 0.924 49 H 0.132 0.868 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 2.465 11.995 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.108 4.108 3 C -0.015 4.015 4 C -0.149 4.149 5 C -0.081 4.081 6 C -0.230 4.230 7 C 0.100 3.900 8 O -0.214 6.214 9 C -0.050 4.050 10 C 0.029 3.971 11 H 0.104 0.896 12 O -0.342 6.342 13 C -0.008 4.008 14 N -0.284 5.284 15 C -0.356 4.356 16 H 0.079 0.921 17 C -0.192 4.192 18 N -0.543 5.543 19 Si 0.725 3.275 20 H -0.213 1.213 21 H -0.222 1.222 22 H -0.205 1.205 23 C 0.063 3.937 24 C -0.169 4.169 25 C -0.162 4.162 26 C -0.155 4.155 27 C -0.173 4.173 28 C -0.176 4.176 29 C -0.084 4.084 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.213 0.787 37 H 0.121 0.879 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.061 0.939 48 H 0.094 0.906 49 H 0.150 0.850 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.008 3.046 11.805 14.586 hybrid contribution 1.619 -0.740 0.228 1.794 sum -6.389 2.306 12.033 13.817 Atomic orbital electron populations 1.81231 1.13079 1.08760 1.08494 1.29201 0.95187 0.93274 0.93160 1.18068 0.81483 1.05425 0.96520 1.19209 1.06752 0.93927 0.95048 1.20823 0.96071 0.99120 0.92082 1.21352 1.07320 0.95352 0.99007 1.19284 0.92010 0.92755 0.85916 1.86237 1.79035 1.36648 1.19517 1.23966 1.00793 0.90218 0.89999 1.22940 0.85528 0.98503 0.90097 0.89590 1.86537 1.19323 1.38738 1.89561 1.21521 0.98843 0.94293 0.86167 1.43715 1.02245 1.70064 1.12358 1.18869 0.81877 1.00547 1.34288 0.92128 1.25105 0.97679 0.94650 1.01806 1.69878 1.33959 0.98985 1.51442 0.86416 0.85732 0.76959 0.78400 1.21254 1.22165 1.20456 1.21075 0.91794 0.91315 0.89548 1.22800 1.02560 0.96719 0.94788 1.22448 0.98923 0.96674 0.98155 1.22244 1.00223 0.96680 0.96341 1.22578 1.00943 0.98415 0.95411 1.20458 1.05365 0.99406 0.92342 1.20808 0.96581 0.95069 0.95952 0.86581 0.86603 0.85603 0.84995 0.91754 0.91762 0.78736 0.87927 0.94945 0.93588 0.93587 0.89698 0.93731 0.92919 0.92878 0.93459 0.91969 0.93869 0.90574 0.84988 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.38 18.54 42.15 0.78 -4.60 16 2 C 0.21 1.83 15.41 -20.76 -0.32 1.51 16 3 C 0.02 0.12 5.83 -30.67 -0.18 -0.06 16 4 C -0.15 -1.19 5.09 -104.60 -0.53 -1.73 16 5 C -0.06 -0.58 9.69 -39.61 -0.38 -0.97 16 6 C -0.21 -2.46 9.04 -39.43 -0.36 -2.82 16 7 C 0.15 1.97 6.69 -39.21 -0.26 1.70 16 8 O -0.30 -4.75 10.10 -24.25 -0.24 -5.00 16 9 C 0.03 0.40 4.37 37.16 0.16 0.56 16 10 C 0.09 1.68 3.52 -26.73 -0.09 1.58 16 11 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 12 O -0.54 -10.93 12.57 -40.08 -0.50 -11.43 16 13 C 0.12 2.45 4.98 -4.04 -0.02 2.43 16 14 N -0.57 -12.59 2.33 -164.39 -0.38 -12.97 16 15 C -0.23 -5.56 7.11 -15.06 -0.11 -5.67 16 16 H 0.06 1.57 6.99 -52.49 -0.37 1.20 16 17 C 0.01 0.15 4.96 -17.43 -0.09 0.07 16 18 N -0.90 -23.49 11.43 55.49 0.63 -22.86 16 19 Si 0.89 20.46 29.61 -169.99 -5.03 15.43 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.17 3.37 3.41 -66.81 -0.23 3.14 16 24 C -0.13 -2.49 6.43 -25.03 -0.16 -2.65 16 25 C -0.12 -2.00 6.91 -24.70 -0.17 -2.17 16 26 C -0.12 -1.94 6.83 -25.08 -0.17 -2.12 16 27 C -0.13 -2.47 6.15 -25.61 -0.16 -2.62 16 28 C -0.16 -1.80 9.99 -39.43 -0.39 -2.19 16 29 C -0.07 -0.58 9.69 -39.61 -0.38 -0.97 16 30 H 0.12 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.12 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.13 1.47 6.30 -52.48 -0.33 1.14 16 34 H 0.06 0.94 7.66 -51.93 -0.40 0.54 16 35 H 0.06 0.88 7.66 -51.93 -0.40 0.48 16 36 H 0.37 7.04 9.05 45.56 0.41 7.45 16 37 H 0.10 2.35 5.48 -51.93 -0.28 2.07 16 38 H 0.03 0.63 7.96 -51.93 -0.41 0.22 16 39 H 0.25 6.54 8.32 -40.82 -0.34 6.20 16 40 H 0.05 0.87 7.85 -51.93 -0.41 0.46 16 41 H 0.08 1.92 7.18 -51.93 -0.37 1.55 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.08 1.58 6.78 -51.93 -0.35 1.23 16 49 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 50 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 410.55 15.07 6.19 6.19 Total: -1.00 -29.66 410.55 -9.52 -39.18 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -7.11 Total: 9.02 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -3.84 Total: -12.96 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 1.03 Total: -40.43 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.75 Total: -16.43 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -29.66 -9.52 -39.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610012829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.856 kcal (2) G-P(sol) polarization free energy of solvation -29.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds