Wall clock time and date at job start Wed Apr 1 2020 03:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.50698 * 109.47286 * 106.84794 * 3 2 1 5 5 C 1.38262 * 119.94246 * 269.72588 * 4 3 2 6 6 C 1.38146 * 120.05636 * 179.72382 * 5 4 3 7 7 C 1.38740 * 119.94437 * 0.57060 * 6 5 4 8 8 O 1.35892 * 120.05620 * 179.68171 * 7 6 5 9 9 C 1.42898 * 117.00211 * 0.02562 * 8 7 6 10 10 C 1.53002 * 109.47023 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47195 * 304.99747 * 10 9 8 12 12 O 1.42901 * 109.47200 * 64.99980 * 10 9 8 13 13 C 1.53004 * 109.46992 * 184.99895 * 10 9 8 14 14 N 1.46499 * 109.46879 * 180.02562 * 13 10 9 15 15 C 1.36938 * 120.00432 * 89.99982 * 14 13 10 16 16 H 1.08002 * 120.00114 * 217.15639 * 15 14 13 17 17 C 1.38807 * 119.99791 * 37.15737 * 15 14 13 18 18 N 1.31619 * 120.00427 * 21.27017 * 17 15 14 19 19 Si 1.86807 * 119.99816 * 201.27302 * 17 15 14 20 20 H 1.48503 * 109.46909 * 89.99873 * 19 17 15 21 21 H 1.48501 * 109.46887 * 209.99766 * 19 17 15 22 22 H 1.48489 * 109.47009 * 329.99751 * 19 17 15 23 23 C 1.46507 * 119.99774 * 269.99633 * 14 13 10 24 24 C 1.54267 * 110.03227 * 241.38262 * 23 14 13 25 25 C 1.54964 * 104.15853 * 217.13841 * 24 23 14 26 26 C 1.54885 * 102.77814 * 37.88694 * 25 24 23 27 27 C 1.53878 * 110.03134 * 124.16628 * 23 14 13 28 28 C 1.38734 * 119.88235 * 359.70207 * 7 6 5 29 29 C 1.38143 * 119.94690 * 0.02562 * 28 7 6 30 30 H 1.09003 * 109.47461 * 226.84635 * 3 2 1 31 31 H 1.09002 * 109.47589 * 346.84426 * 3 2 1 32 32 H 1.07999 * 119.97526 * 359.97438 * 5 4 3 33 33 H 1.08003 * 120.02988 * 180.24801 * 6 5 4 34 34 H 1.09001 * 109.47112 * 299.99629 * 9 8 7 35 35 H 1.09000 * 109.47559 * 60.00194 * 9 8 7 36 36 H 0.96698 * 114.00394 * 59.99786 * 12 10 9 37 37 H 1.09000 * 109.47030 * 299.99954 * 13 10 9 38 38 H 1.09001 * 109.47355 * 60.00192 * 13 10 9 39 39 H 0.96998 * 120.00656 * 174.94332 * 18 17 15 40 40 H 1.08994 * 110.01723 * 2.77791 * 23 14 13 41 41 H 1.08998 * 110.48747 * 335.78646 * 24 23 14 42 42 H 1.09001 * 110.48449 * 98.42582 * 24 23 14 43 43 H 1.09004 * 110.71972 * 279.56960 * 25 24 23 44 44 H 1.09002 * 110.92132 * 156.30085 * 25 24 23 45 45 H 1.09002 * 110.48270 * 203.40123 * 26 25 24 46 46 H 1.09002 * 110.59898 * 80.82192 * 26 25 24 47 47 H 1.08996 * 110.02890 * 238.57253 * 27 23 14 48 48 H 1.09005 * 110.02883 * 0.02562 * 27 23 14 49 49 H 1.07997 * 120.02484 * 179.97438 * 28 7 6 50 50 H 1.07997 * 119.97125 * 180.02562 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1101 0.4127 -1.3598 5 6 3.3460 -0.5458 -2.3279 6 6 3.8009 -0.1703 -3.5771 7 6 4.0324 1.1689 -3.8560 8 8 4.4861 1.5403 -5.0819 9 6 4.7027 0.4991 -6.0363 10 6 5.2085 1.1056 -7.3468 11 1 4.5090 1.8690 -7.6877 12 8 6.4921 1.6965 -7.1341 13 6 5.3216 0.0079 -8.4066 14 7 5.8065 0.5885 -9.6612 15 6 7.1512 0.6512 -9.9120 16 1 7.5655 1.5065 -10.4253 17 6 7.9819 -0.3844 -9.5068 18 7 7.4794 -1.5784 -9.2737 19 14 9.8130 -0.0835 -9.2919 20 1 10.0834 0.3477 -7.8969 21 1 10.5572 -1.3368 -9.5757 22 1 10.2538 0.9777 -10.2324 23 6 4.8526 1.1020 -10.6475 24 6 4.9858 0.3181 -11.9694 25 6 4.7711 1.3891 -13.0686 26 6 5.4873 2.6307 -12.4816 27 6 5.1709 2.5719 -10.9730 28 6 3.8003 2.1282 -2.8810 29 6 3.3400 1.7480 -1.6352 30 1 2.9710 0.7037 0.7497 31 1 2.9718 -0.9999 0.2339 32 1 3.1706 -1.5887 -2.1087 33 1 3.9812 -0.9190 -4.3343 34 1 5.4439 -0.2002 -5.6493 35 1 3.7660 -0.0279 -6.2181 36 1 7.1661 1.0738 -6.8290 37 1 6.0210 -0.7555 -8.0657 38 1 4.3425 -0.4428 -8.5689 39 1 8.0682 -2.3196 -9.0620 40 1 3.8362 1.0164 -10.2633 41 1 5.9797 -0.1212 -12.0540 42 1 4.2196 -0.4546 -12.0335 43 1 3.7088 1.5874 -13.2115 44 1 5.2349 1.0829 -14.0063 45 1 5.0869 3.5448 -12.9201 46 1 6.5626 2.5678 -12.6487 47 1 4.3087 3.1994 -10.7475 48 1 6.0354 2.9030 -10.3974 49 1 3.9801 3.1713 -3.0955 50 1 3.1588 2.4944 -0.8760 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610012829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:37 Heat of formation + Delta-G solvation = -42.455832 kcal Electronic energy + Delta-G solvation = -29755.991366 eV Core-core repulsion = 25748.040952 eV Total energy + Delta-G solvation = -4007.950414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.17969 -39.66499 -39.00092 -37.80660 -37.22463 -35.50628 -33.29868 -32.97912 -32.02204 -31.19821 -29.33214 -28.48410 -28.03457 -27.05302 -24.64374 -23.54686 -22.47627 -22.14836 -21.29874 -20.76336 -19.25471 -18.60952 -18.21087 -17.54745 -17.34302 -16.94643 -16.53795 -16.34739 -16.26113 -15.95350 -15.45348 -15.37091 -15.29163 -14.93796 -14.51216 -14.50127 -14.28238 -14.22508 -14.02504 -13.91380 -13.62135 -13.18593 -13.13272 -12.89450 -12.68372 -12.45810 -12.42236 -12.27338 -12.15527 -11.91042 -11.89195 -11.83429 -11.76003 -11.71535 -11.65708 -11.47647 -11.32418 -11.15798 -10.79486 -10.42563 -9.93185 -9.08925 -8.37481 -7.75010 -5.28057 0.37995 0.42700 1.47362 1.52688 1.58471 1.85617 1.89275 2.19212 2.57795 2.72129 3.32164 3.38873 3.54807 3.71655 3.85896 3.93705 3.99219 4.00085 4.00730 4.05908 4.13049 4.28742 4.40350 4.45015 4.46448 4.52869 4.68447 4.72043 4.76128 4.79127 4.83155 4.90275 4.96378 4.96727 4.99798 5.12070 5.12916 5.21799 5.26367 5.31644 5.33509 5.45335 5.53873 5.60517 5.67437 5.69834 5.73681 5.87051 5.89247 6.47228 6.59932 6.68318 6.93149 7.28124 7.95927 8.48233 9.24256 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013824 B = 0.002367 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.952072 B =11827.167176 C =12849.624236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.238 3.762 3 C 0.030 3.970 4 C -0.137 4.137 5 C -0.066 4.066 6 C -0.225 4.225 7 C 0.111 3.889 8 O -0.326 6.326 9 C 0.041 3.959 10 C 0.102 3.898 11 H 0.079 0.921 12 O -0.555 6.555 13 C 0.123 3.877 14 N -0.579 5.579 15 C -0.216 4.216 16 H 0.044 0.956 17 C -0.031 4.031 18 N -0.921 5.921 19 Si 0.941 3.059 20 H -0.281 1.281 21 H -0.301 1.301 22 H -0.284 1.284 23 C 0.160 3.840 24 C -0.127 4.127 25 C -0.113 4.113 26 C -0.114 4.114 27 C -0.128 4.128 28 C -0.173 4.173 29 C -0.062 4.062 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.129 0.871 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.369 0.631 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.249 0.751 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.044 0.956 47 H 0.062 0.938 48 H 0.045 0.955 49 H 0.130 0.870 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.095 2.856 13.676 15.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.078 4.078 3 C -0.009 4.009 4 C -0.138 4.138 5 C -0.084 4.084 6 C -0.244 4.244 7 C 0.066 3.934 8 O -0.240 6.240 9 C -0.035 4.035 10 C 0.040 3.960 11 H 0.097 0.903 12 O -0.359 6.359 13 C -0.004 4.004 14 N -0.298 5.298 15 C -0.347 4.347 16 H 0.061 0.939 17 C -0.227 4.227 18 N -0.567 5.567 19 Si 0.771 3.229 20 H -0.208 1.208 21 H -0.228 1.228 22 H -0.209 1.209 23 C 0.053 3.947 24 C -0.166 4.166 25 C -0.151 4.151 26 C -0.151 4.151 27 C -0.167 4.167 28 C -0.192 4.192 29 C -0.080 4.080 30 H 0.172 0.828 31 H 0.168 0.832 32 H 0.170 0.830 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.215 0.785 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.148 0.852 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.999 3.452 13.498 16.585 hybrid contribution 1.872 -0.829 -0.213 2.058 sum -7.127 2.622 13.284 15.302 Atomic orbital electron populations 1.81273 1.15388 1.11319 1.10649 1.29836 0.95721 0.91129 0.91154 1.18425 0.78674 1.08529 0.95265 1.19548 1.04786 0.93314 0.96169 1.21201 0.95054 1.00887 0.91251 1.21472 1.08055 0.94591 1.00289 1.19593 0.94268 0.94159 0.85385 1.86143 1.80233 1.36849 1.20780 1.23594 1.01310 0.89794 0.88781 1.22656 0.84711 0.97269 0.91339 0.90337 1.86501 1.20261 1.39426 1.89754 1.21425 0.98365 0.94382 0.86226 1.43879 1.01955 1.70263 1.13704 1.18783 0.83222 0.99496 1.33160 0.93880 1.25493 1.00052 0.94579 1.02556 1.69978 1.34424 0.99301 1.52950 0.85691 0.82815 0.76140 0.78220 1.20787 1.22779 1.20923 1.21298 0.91808 0.92182 0.89363 1.22687 1.00267 0.97648 0.96024 1.22403 1.00541 0.94849 0.97259 1.22221 0.99477 0.98343 0.95087 1.22476 1.00388 0.97485 0.96394 1.20682 1.06105 0.99174 0.93225 1.21215 0.95042 0.96373 0.95384 0.82795 0.83170 0.83038 0.85324 0.91575 0.90431 0.78505 0.90160 0.94148 0.94118 0.92447 0.93750 0.93290 0.90358 0.91799 0.90559 0.93688 0.91904 0.93637 0.85223 0.82130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.73 18.54 20.00 0.37 -11.36 16 2 C 0.24 3.43 15.41 89.44 1.38 4.81 16 3 C 0.03 0.14 5.83 28.04 0.16 0.31 16 4 C -0.14 -1.71 5.09 -19.85 -0.10 -1.81 16 5 C -0.07 -1.05 9.69 22.25 0.22 -0.84 16 6 C -0.23 -5.08 9.04 22.37 0.20 -4.88 16 7 C 0.11 2.98 6.69 22.51 0.15 3.13 16 8 O -0.33 -10.54 10.10 -87.70 -0.89 -11.43 16 9 C 0.04 1.28 4.37 71.98 0.31 1.60 16 10 C 0.10 3.83 3.52 30.60 0.11 3.94 16 11 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 12 O -0.56 -23.30 12.57 -144.34 -1.82 -25.12 16 13 C 0.12 5.19 4.98 86.38 0.43 5.62 16 14 N -0.58 -26.45 2.33 -674.00 -1.57 -28.02 16 15 C -0.22 -10.99 7.11 84.03 0.60 -10.39 16 16 H 0.04 2.33 6.99 -2.91 -0.02 2.31 16 17 C -0.03 -1.59 4.96 84.86 0.42 -1.17 16 18 N -0.92 -49.56 11.43 21.65 0.25 -49.31 16 19 Si 0.94 43.16 29.61 68.60 2.03 45.19 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 23 C 0.16 6.34 3.41 45.72 0.16 6.50 16 24 C -0.13 -4.87 6.43 31.70 0.20 -4.67 16 25 C -0.11 -3.42 6.91 31.91 0.22 -3.20 16 26 C -0.11 -3.61 6.83 31.67 0.22 -3.39 16 27 C -0.13 -4.65 6.15 31.32 0.19 -4.46 16 28 C -0.17 -3.82 9.99 22.37 0.22 -3.60 16 29 C -0.06 -0.92 9.69 22.25 0.22 -0.70 16 30 H 0.15 -0.26 8.08 -2.39 -0.02 -0.28 16 31 H 0.15 -0.14 8.08 -2.39 -0.02 -0.15 16 32 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 33 H 0.13 2.86 6.30 -2.91 -0.02 2.84 16 34 H 0.07 2.00 7.66 -2.39 -0.02 1.98 16 35 H 0.08 2.15 7.66 -2.39 -0.02 2.14 16 36 H 0.37 14.76 9.05 -74.06 -0.67 14.09 16 37 H 0.08 3.81 5.48 -2.39 -0.01 3.80 16 38 H 0.04 1.60 7.96 -2.39 -0.02 1.58 16 39 H 0.25 13.21 8.32 -92.71 -0.77 12.44 16 40 H 0.06 2.12 7.85 -2.39 -0.02 2.10 16 41 H 0.04 2.06 7.18 -2.39 -0.02 2.04 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.04 1.92 6.78 -2.38 -0.02 1.91 16 49 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 50 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -68.25 410.55 3.96 -64.29 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.28 Total: 28.96 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 5.31 Total: -13.21 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -0.95 Total: -88.69 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -2.70 Total: -36.54 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -68.25 3.96 -64.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610012829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.835 kcal (2) G-P(sol) polarization free energy of solvation -68.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds