Wall clock time and date at job start Wed Apr 1 2020 03:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 119.99947 * 2 1 4 4 H 1.48501 * 109.47148 * 270.00275 * 3 2 1 5 5 H 1.48504 * 109.47346 * 30.00047 * 3 2 1 6 6 H 1.48505 * 109.47309 * 150.00082 * 3 2 1 7 7 C 1.38815 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00175 * 163.07406 * 7 2 1 9 9 N 1.36939 * 119.99662 * 343.07398 * 7 2 1 10 10 C 1.46921 * 120.63391 * 331.85020 * 9 7 2 11 11 C 1.53192 * 108.77432 * 233.58698 * 10 9 7 12 12 C 1.53033 * 109.31353 * 305.36291 * 11 10 9 13 13 N 1.46501 * 109.46316 * 181.38487 * 12 11 10 14 14 C 1.34773 * 120.00209 * 154.96938 * 13 12 11 15 15 O 1.21285 * 120.00132 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99958 * 179.97438 * 14 13 12 17 17 O 1.42900 * 109.46894 * 180.02562 * 16 14 13 18 18 C 1.42904 * 113.99979 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47085 * 180.02562 * 18 17 16 20 20 C 1.32565 * 119.99738 * 135.00562 * 19 18 17 21 21 C 1.47821 * 119.99765 * 179.97438 * 20 19 18 22 22 C 1.39531 * 120.14033 * 179.97438 * 21 20 19 23 23 C 1.37972 * 119.85643 * 179.97438 * 22 21 20 24 24 C 1.38349 * 120.14058 * 0.02562 * 23 22 21 25 25 C 1.38345 * 120.28541 * 359.97438 * 24 23 22 26 26 C 1.37973 * 120.14320 * 0.02562 * 25 24 23 27 27 C 1.53045 * 109.52840 * 61.37058 * 12 11 10 28 28 C 1.46924 * 120.62646 * 151.82484 * 9 7 2 29 29 H 0.96997 * 119.99811 * 359.97438 * 1 2 3 30 30 H 1.08988 * 109.59148 * 113.79840 * 10 9 7 31 31 H 1.09004 * 109.70540 * 353.43969 * 10 9 7 32 32 H 1.08998 * 109.50019 * 185.40900 * 11 10 9 33 33 H 1.09009 * 109.49899 * 65.31664 * 11 10 9 34 34 H 1.08998 * 109.46250 * 301.35871 * 12 11 10 35 35 H 0.97000 * 120.00084 * 334.97359 * 13 12 11 36 36 H 1.08992 * 109.46683 * 60.00709 * 16 14 13 37 37 H 1.08995 * 109.47148 * 300.00347 * 16 14 13 38 38 H 1.09005 * 109.46663 * 60.00183 * 18 17 16 39 39 H 1.09000 * 109.47089 * 300.00388 * 18 17 16 40 40 H 1.07999 * 119.99832 * 314.99531 * 19 18 17 41 41 H 1.07989 * 120.00202 * 359.97438 * 20 19 18 42 42 H 1.07999 * 120.07377 * 0.02562 * 22 21 20 43 43 H 1.07994 * 119.93088 * 179.72623 * 23 22 21 44 44 H 1.07996 * 119.85703 * 179.97438 * 24 23 22 45 45 H 1.07996 * 119.92782 * 180.02562 * 25 24 23 46 46 H 1.07999 * 120.07086 * 180.02562 * 26 25 24 47 47 H 1.09005 * 109.49592 * 58.58255 * 27 12 11 48 48 H 1.09001 * 109.49747 * 178.67752 * 27 12 11 49 49 H 1.09001 * 109.58631 * 246.19690 * 28 9 7 50 50 H 1.09002 * 109.59049 * 6.48316 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3701 -2.3625 0.3442 10 6 0.2261 -2.3410 1.2658 11 6 0.4974 -3.3210 2.4115 12 6 0.8120 -4.7022 1.8324 13 7 1.0395 -5.6498 2.9262 14 6 0.8356 -6.9675 2.7296 15 8 0.4641 -7.3688 1.6471 16 6 1.0703 -7.9424 3.8547 17 8 0.7885 -9.2683 3.4025 18 6 0.9811 -10.2752 4.3981 19 6 0.6574 -11.6266 3.8150 20 6 1.4654 -12.6542 4.0353 21 6 1.1476 -13.9799 3.4638 22 6 1.9963 -15.0635 3.6933 23 6 1.6937 -16.2984 3.1575 24 6 0.5521 -16.4635 2.3937 25 6 -0.2934 -15.3932 2.1624 26 6 -0.0023 -14.1531 2.6925 27 6 2.0675 -4.6178 0.9614 28 6 1.8139 -3.6527 -0.2009 29 1 -0.4850 0.8400 0.0004 30 1 -0.6770 -2.6411 0.7344 31 1 0.0966 -1.3360 1.6676 32 1 -0.3832 -3.3864 3.0506 33 1 1.3471 -2.9699 2.9972 34 1 -0.0281 -5.0418 1.2265 35 1 1.3370 -5.3290 3.7919 36 1 0.4158 -7.6965 4.6908 37 1 2.1098 -7.8819 4.1769 38 1 0.3247 -10.0781 5.2458 39 1 2.0187 -10.2627 4.7315 40 1 -0.2329 -11.7579 3.2178 41 1 2.3557 -12.5229 4.6321 42 1 2.8875 -14.9360 4.2897 43 1 2.3520 -17.1368 3.3307 44 1 0.3199 -17.4320 1.9762 45 1 -1.1833 -15.5286 1.5657 46 1 -0.6633 -13.3184 2.5116 47 1 2.9023 -4.2544 1.5607 48 1 2.3046 -5.6064 0.5681 49 1 1.0402 -4.0598 -0.8520 50 1 2.7333 -3.5124 -0.7694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610785901.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:57 Heat of formation + Delta-G solvation = -20.826350 kcal Electronic energy + Delta-G solvation = -28065.413408 eV Core-core repulsion = 24058.400920 eV Total energy + Delta-G solvation = -4007.012489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -39.84354 -39.55278 -38.15402 -37.10818 -34.91833 -34.39621 -32.21475 -31.35893 -30.89646 -30.21672 -29.60895 -27.96759 -25.88312 -24.74773 -23.30272 -22.31612 -22.29368 -21.94742 -20.37371 -19.78097 -19.26978 -17.71779 -17.26270 -16.95607 -16.49014 -16.43186 -15.81785 -15.45810 -15.21448 -14.85972 -14.61554 -14.46569 -13.98760 -13.75289 -13.65698 -13.53846 -13.35936 -13.29362 -13.02421 -12.76382 -12.54714 -12.37682 -12.32665 -11.75694 -11.47236 -11.45402 -11.20184 -11.12943 -10.86787 -10.71200 -10.68303 -10.50011 -10.28396 -10.04552 -10.00268 -9.85916 -9.68191 -9.44434 -9.32411 -8.73137 -8.50239 -8.46144 -6.68431 -5.80045 -3.22111 0.51086 1.03914 2.03310 2.73162 2.88201 3.36931 3.43990 3.46117 3.55232 3.85383 4.39749 4.40498 4.49224 4.59641 4.67769 4.69080 4.80117 4.87649 4.91253 4.95441 5.02975 5.05885 5.15573 5.22792 5.33342 5.41937 5.50030 5.57913 5.58947 5.64950 5.87027 5.89195 6.02384 6.07140 6.14590 6.19949 6.26261 6.32419 6.39600 6.51561 6.56054 6.58362 6.61122 6.74206 6.80402 6.92659 6.99958 7.30846 7.58416 7.70042 7.79469 8.38149 8.44254 9.20413 9.83639 10.40813 11.28956 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.032195 B = 0.001382 C = 0.001367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.490450 B =20261.070009 C =20472.004078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.152 3.848 13 N -0.723 5.723 14 C 0.509 3.491 15 O -0.520 6.520 16 C 0.044 3.956 17 O -0.358 6.358 18 C 0.089 3.911 19 C -0.133 4.133 20 C -0.113 4.113 21 C -0.054 4.054 22 C -0.110 4.110 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.113 4.113 27 C -0.139 4.139 28 C 0.147 3.853 29 H 0.254 0.746 30 H 0.021 0.979 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.396 0.604 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.021 0.979 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.055 -28.107 13.828 31.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.049 3.951 13 N -0.375 5.375 14 C 0.293 3.707 15 O -0.395 6.395 16 C -0.036 4.036 17 O -0.276 6.276 18 C 0.013 3.987 19 C -0.151 4.151 20 C -0.131 4.131 21 C -0.054 4.054 22 C -0.128 4.128 23 C -0.139 4.139 24 C -0.140 4.140 25 C -0.136 4.136 26 C -0.131 4.131 27 C -0.180 4.180 28 C 0.020 3.980 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.229 0.771 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.142 0.858 46 H 0.145 0.855 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.039 0.961 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.606 -28.293 12.820 31.103 hybrid contribution 0.667 1.045 0.757 1.452 sum 2.273 -27.248 13.577 30.528 Atomic orbital electron populations 1.70026 1.05262 1.25529 1.53948 1.25050 0.95278 0.98414 1.00877 0.86307 0.79127 0.83640 0.77755 1.21376 1.21569 1.20515 1.19185 0.92590 0.84758 1.41709 0.91664 1.44087 1.35810 1.01664 1.49964 1.20735 0.88930 0.97872 0.87683 1.22541 1.00534 0.94671 1.00865 1.21060 0.98603 0.88067 0.87332 1.46245 1.69187 1.06072 1.16040 1.20157 0.78232 0.83049 0.89226 1.90740 1.44670 1.78056 1.26044 1.22257 1.01510 0.83743 0.96128 1.88065 1.89472 1.13514 1.36527 1.21494 1.00059 0.86277 0.90892 1.23104 0.99964 0.92617 0.99399 1.21590 0.99278 0.91698 1.00536 1.19026 0.95148 0.93313 0.97947 1.21269 0.99209 0.92398 0.99940 1.21102 0.97407 0.97304 0.98067 1.21241 0.94998 0.98961 0.98803 1.21129 0.99760 0.92885 0.99805 1.21403 0.96778 0.97687 0.97231 1.22380 0.97102 0.99591 0.98887 1.20879 0.97955 0.86526 0.92639 0.93604 0.96093 0.89018 0.92715 0.92137 0.89975 0.77107 0.90343 0.90348 0.91780 0.92397 0.85849 0.86132 0.85833 0.85952 0.86079 0.85837 0.85520 0.92311 0.92697 0.96146 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.98 11.19 55.49 0.62 -25.36 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -14.79 2.99 -172.33 -0.52 -15.30 16 10 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 11 C -0.15 -2.63 5.55 -26.61 -0.15 -2.78 16 12 C 0.15 2.64 2.42 -67.89 -0.16 2.48 16 13 N -0.72 -9.82 5.08 -53.76 -0.27 -10.10 16 14 C 0.51 7.48 7.87 -10.98 -0.09 7.40 16 15 O -0.52 -10.27 16.16 -14.36 -0.23 -10.50 16 16 C 0.04 0.45 6.42 36.01 0.23 0.68 16 17 O -0.36 -4.42 9.86 -55.14 -0.54 -4.96 16 18 C 0.09 0.74 6.36 36.01 0.23 0.97 16 19 C -0.13 -1.15 9.31 -36.22 -0.34 -1.49 16 20 C -0.11 -0.89 9.51 -37.57 -0.36 -1.24 16 21 C -0.05 -0.46 5.87 -105.01 -0.62 -1.08 16 22 C -0.11 -0.82 9.79 -39.20 -0.38 -1.20 16 23 C -0.12 -0.82 10.03 -39.64 -0.40 -1.22 16 24 C -0.12 -0.84 10.04 -39.50 -0.40 -1.24 16 25 C -0.12 -0.89 10.03 -39.64 -0.40 -1.29 16 26 C -0.11 -0.96 9.40 -39.19 -0.37 -1.33 16 27 C -0.14 -2.56 5.65 -26.61 -0.15 -2.71 16 28 C 0.15 3.19 6.52 -3.71 -0.02 3.17 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.02 0.52 8.14 -51.94 -0.42 0.10 16 31 H 0.09 2.37 6.07 -51.93 -0.31 2.06 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 34 H 0.08 1.63 7.58 -51.93 -0.39 1.23 16 35 H 0.40 4.03 8.60 -40.82 -0.35 3.68 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.38 7.88 -51.93 -0.41 -0.03 16 40 H 0.12 1.11 6.04 -52.49 -0.32 0.79 16 41 H 0.12 0.73 7.92 -52.49 -0.42 0.31 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 45 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 46 H 0.13 0.98 6.17 -52.49 -0.32 0.65 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 LS Contribution 410.64 15.07 6.19 6.19 Total: -1.00 -34.07 410.64 -11.38 -45.45 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.98 Total: 2.09 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -3.62 Total: -3.91 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.17 Total: -50.77 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.78 Total: -15.47 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.07 -11.38 -45.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610785901.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.622 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds