Wall clock time and date at job start Wed Apr 1 2020 03:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 119.99947 * 2 1 4 4 H 1.48501 * 109.47148 * 270.00275 * 3 2 1 5 5 H 1.48504 * 109.47346 * 30.00047 * 3 2 1 6 6 H 1.48505 * 109.47309 * 150.00082 * 3 2 1 7 7 C 1.38815 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00175 * 163.07406 * 7 2 1 9 9 N 1.36939 * 119.99662 * 343.07398 * 7 2 1 10 10 C 1.46921 * 120.63391 * 331.85020 * 9 7 2 11 11 C 1.53192 * 108.77432 * 233.58698 * 10 9 7 12 12 C 1.53033 * 109.31353 * 305.36291 * 11 10 9 13 13 N 1.46501 * 109.46316 * 181.38487 * 12 11 10 14 14 C 1.34773 * 120.00209 * 154.96938 * 13 12 11 15 15 O 1.21285 * 120.00132 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99958 * 179.97438 * 14 13 12 17 17 O 1.42900 * 109.46894 * 180.02562 * 16 14 13 18 18 C 1.42904 * 113.99979 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47085 * 180.02562 * 18 17 16 20 20 C 1.32565 * 119.99738 * 135.00562 * 19 18 17 21 21 C 1.47821 * 119.99765 * 179.97438 * 20 19 18 22 22 C 1.39531 * 120.14033 * 179.97438 * 21 20 19 23 23 C 1.37972 * 119.85643 * 179.97438 * 22 21 20 24 24 C 1.38349 * 120.14058 * 0.02562 * 23 22 21 25 25 C 1.38345 * 120.28541 * 359.97438 * 24 23 22 26 26 C 1.37973 * 120.14320 * 0.02562 * 25 24 23 27 27 C 1.53045 * 109.52840 * 61.37058 * 12 11 10 28 28 C 1.46924 * 120.62646 * 151.82484 * 9 7 2 29 29 H 0.96997 * 119.99811 * 359.97438 * 1 2 3 30 30 H 1.08988 * 109.59148 * 113.79840 * 10 9 7 31 31 H 1.09004 * 109.70540 * 353.43969 * 10 9 7 32 32 H 1.08998 * 109.50019 * 185.40900 * 11 10 9 33 33 H 1.09009 * 109.49899 * 65.31664 * 11 10 9 34 34 H 1.08998 * 109.46250 * 301.35871 * 12 11 10 35 35 H 0.97000 * 120.00084 * 334.97359 * 13 12 11 36 36 H 1.08992 * 109.46683 * 60.00709 * 16 14 13 37 37 H 1.08995 * 109.47148 * 300.00347 * 16 14 13 38 38 H 1.09005 * 109.46663 * 60.00183 * 18 17 16 39 39 H 1.09000 * 109.47089 * 300.00388 * 18 17 16 40 40 H 1.07999 * 119.99832 * 314.99531 * 19 18 17 41 41 H 1.07989 * 120.00202 * 359.97438 * 20 19 18 42 42 H 1.07999 * 120.07377 * 0.02562 * 22 21 20 43 43 H 1.07994 * 119.93088 * 179.72623 * 23 22 21 44 44 H 1.07996 * 119.85703 * 179.97438 * 24 23 22 45 45 H 1.07996 * 119.92782 * 180.02562 * 25 24 23 46 46 H 1.07999 * 120.07086 * 180.02562 * 26 25 24 47 47 H 1.09005 * 109.49592 * 58.58255 * 27 12 11 48 48 H 1.09001 * 109.49747 * 178.67752 * 27 12 11 49 49 H 1.09001 * 109.58631 * 246.19690 * 28 9 7 50 50 H 1.09002 * 109.59049 * 6.48316 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3701 -2.3625 0.3442 10 6 0.2261 -2.3410 1.2658 11 6 0.4974 -3.3210 2.4115 12 6 0.8120 -4.7022 1.8324 13 7 1.0395 -5.6498 2.9262 14 6 0.8356 -6.9675 2.7296 15 8 0.4641 -7.3688 1.6471 16 6 1.0703 -7.9424 3.8547 17 8 0.7885 -9.2683 3.4025 18 6 0.9811 -10.2752 4.3981 19 6 0.6574 -11.6266 3.8150 20 6 1.4654 -12.6542 4.0353 21 6 1.1476 -13.9799 3.4638 22 6 1.9963 -15.0635 3.6933 23 6 1.6937 -16.2984 3.1575 24 6 0.5521 -16.4635 2.3937 25 6 -0.2934 -15.3932 2.1624 26 6 -0.0023 -14.1531 2.6925 27 6 2.0675 -4.6178 0.9614 28 6 1.8139 -3.6527 -0.2009 29 1 -0.4850 0.8400 0.0004 30 1 -0.6770 -2.6411 0.7344 31 1 0.0966 -1.3360 1.6676 32 1 -0.3832 -3.3864 3.0506 33 1 1.3471 -2.9699 2.9972 34 1 -0.0281 -5.0418 1.2265 35 1 1.3370 -5.3290 3.7919 36 1 0.4158 -7.6965 4.6908 37 1 2.1098 -7.8819 4.1769 38 1 0.3247 -10.0781 5.2458 39 1 2.0187 -10.2627 4.7315 40 1 -0.2329 -11.7579 3.2178 41 1 2.3557 -12.5229 4.6321 42 1 2.8875 -14.9360 4.2897 43 1 2.3520 -17.1368 3.3307 44 1 0.3199 -17.4320 1.9762 45 1 -1.1833 -15.5286 1.5657 46 1 -0.6633 -13.3184 2.5116 47 1 2.9023 -4.2544 1.5607 48 1 2.3046 -5.6064 0.5681 49 1 1.0402 -4.0598 -0.8520 50 1 2.7333 -3.5124 -0.7694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610785901.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:56 Heat of formation + Delta-G solvation = -40.491010 kcal Electronic energy + Delta-G solvation = -28066.266132 eV Core-core repulsion = 24058.400920 eV Total energy + Delta-G solvation = -4007.865212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.02747 -40.10652 -39.25979 -38.43398 -35.99895 -35.49993 -33.97368 -31.99357 -31.87373 -31.53420 -31.16658 -28.97813 -26.90357 -26.21947 -23.98459 -23.85396 -23.60034 -22.84782 -21.56036 -21.00520 -20.32849 -18.90831 -18.36767 -17.88396 -17.67760 -17.23633 -16.91211 -16.59649 -16.27612 -15.90486 -15.74311 -15.44912 -15.35903 -15.27974 -14.84600 -14.58795 -14.39125 -14.22192 -14.10150 -13.95215 -13.88923 -13.29409 -13.21390 -13.14778 -13.01405 -12.61496 -12.52114 -12.33561 -12.22582 -12.02546 -11.98658 -11.88181 -11.74543 -11.56488 -11.36109 -11.28492 -10.79104 -10.66187 -10.55960 -10.02208 -9.87292 -9.07483 -8.71086 -7.88041 -5.33956 -0.06218 0.48989 1.43884 1.48916 1.49892 1.60107 1.62084 1.93507 2.52271 2.96081 3.09027 3.28452 3.63405 3.72960 3.84358 3.86813 3.92786 4.04182 4.09918 4.19036 4.21981 4.27316 4.31319 4.33176 4.41732 4.45543 4.47389 4.54083 4.62408 4.64050 4.68702 4.81307 4.85118 5.02047 5.04573 5.05852 5.13083 5.14850 5.28560 5.34685 5.45566 5.46515 5.53455 5.60713 5.62816 5.64445 5.70944 5.83554 6.08023 6.11956 6.38595 6.63727 7.14270 7.30360 7.83468 8.36720 9.19152 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.032195 B = 0.001382 C = 0.001367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.490450 B =20261.070009 C =20472.004078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.048 4.048 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.266 4.266 8 H 0.068 0.932 9 N -0.608 5.608 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.162 3.838 13 N -0.707 5.707 14 C 0.504 3.496 15 O -0.579 6.579 16 C 0.050 3.950 17 O -0.398 6.398 18 C 0.089 3.911 19 C -0.153 4.153 20 C -0.106 4.106 21 C -0.076 4.076 22 C -0.117 4.117 23 C -0.127 4.127 24 C -0.128 4.128 25 C -0.131 4.131 26 C -0.134 4.134 27 C -0.124 4.124 28 C 0.143 3.857 29 H 0.251 0.749 30 H -0.008 1.008 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.418 0.582 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.135 0.865 46 H 0.123 0.877 47 H 0.070 0.930 48 H 0.056 0.944 49 H 0.004 0.996 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.055 -29.316 16.464 33.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.244 4.244 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.396 4.396 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.051 3.949 11 C -0.167 4.167 12 C 0.058 3.942 13 N -0.360 5.360 14 C 0.291 3.709 15 O -0.458 6.458 16 C -0.029 4.029 17 O -0.317 6.317 18 C 0.014 3.986 19 C -0.171 4.171 20 C -0.124 4.124 21 C -0.076 4.076 22 C -0.135 4.135 23 C -0.145 4.145 24 C -0.146 4.146 25 C -0.149 4.149 26 C -0.152 4.152 27 C -0.164 4.164 28 C 0.017 3.983 29 H 0.060 0.940 30 H 0.010 0.990 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.255 0.745 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.159 0.841 45 H 0.153 0.847 46 H 0.141 0.859 47 H 0.089 0.911 48 H 0.075 0.925 49 H 0.022 0.978 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.633 -29.521 15.512 33.546 hybrid contribution 0.017 1.308 -0.134 1.315 sum 3.650 -28.213 15.379 32.339 Atomic orbital electron populations 1.70189 1.06746 1.25985 1.55256 1.25820 0.96018 1.01545 1.00989 0.85255 0.78160 0.79369 0.77493 1.21437 1.21704 1.19265 1.19531 0.92918 0.85837 1.41323 0.91461 1.44340 1.35955 1.02123 1.50753 1.20571 0.87617 0.97847 0.88821 1.22252 1.02183 0.93369 0.98870 1.20630 0.97030 0.88479 0.88098 1.45908 1.68721 1.05455 1.15925 1.21082 0.76545 0.83550 0.89701 1.90723 1.47313 1.78986 1.28808 1.22330 1.04361 0.81854 0.94315 1.88014 1.90058 1.14815 1.38844 1.21663 1.01802 0.84749 0.90412 1.23150 1.00049 0.93581 1.00311 1.21781 0.99498 0.91136 0.99986 1.19280 0.95580 0.94193 0.98564 1.21573 0.99631 0.92304 0.99995 1.21458 0.97632 0.97892 0.97500 1.21572 0.94850 0.99623 0.98550 1.21381 1.00562 0.92897 1.00063 1.21567 0.97323 0.98177 0.98088 1.22167 0.97937 0.98461 0.97806 1.20969 0.97302 0.86102 0.93926 0.94001 0.99007 0.91734 0.90302 0.90716 0.92909 0.74500 0.86799 0.86880 0.89843 0.90227 0.87376 0.84051 0.83924 0.83667 0.84050 0.84683 0.85923 0.91084 0.92536 0.97827 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.20 11.19 21.65 0.24 -54.95 16 2 C -0.05 -2.68 4.92 84.86 0.42 -2.26 16 3 Si 0.97 44.30 29.59 68.60 2.03 46.33 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.27 -14.64 9.58 84.03 0.81 -13.83 16 8 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 9 N -0.61 -30.86 2.99 -699.12 -2.09 -32.95 16 10 C 0.18 8.48 5.30 86.36 0.46 8.94 16 11 C -0.13 -4.42 5.55 30.67 0.17 -4.25 16 12 C 0.16 5.50 2.42 45.02 0.11 5.61 16 13 N -0.71 -17.46 5.08 -442.40 -2.25 -19.70 16 14 C 0.50 13.95 7.87 87.66 0.69 14.64 16 15 O -0.58 -23.05 16.16 15.99 0.26 -22.79 16 16 C 0.05 0.86 6.42 71.24 0.46 1.32 16 17 O -0.40 -9.16 9.86 -129.94 -1.28 -10.44 16 18 C 0.09 1.27 6.36 71.24 0.45 1.72 16 19 C -0.15 -2.56 9.31 24.53 0.23 -2.33 16 20 C -0.11 -1.55 9.51 23.66 0.22 -1.33 16 21 C -0.08 -1.26 5.87 -20.12 -0.12 -1.38 16 22 C -0.12 -1.58 9.79 22.52 0.22 -1.36 16 23 C -0.13 -1.53 10.03 22.23 0.22 -1.30 16 24 C -0.13 -1.63 10.04 22.32 0.22 -1.40 16 25 C -0.13 -1.97 10.03 22.23 0.22 -1.75 16 26 C -0.13 -2.34 9.40 22.52 0.21 -2.13 16 27 C -0.12 -4.45 5.65 30.67 0.17 -4.28 16 28 C 0.14 6.32 6.52 86.36 0.56 6.89 16 29 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 30 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 31 H 0.06 3.43 6.07 -2.38 -0.01 3.41 16 32 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.05 2.13 7.58 -2.39 -0.02 2.12 16 35 H 0.42 6.82 8.60 -92.71 -0.80 6.02 16 36 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.08 0.77 7.88 -2.39 -0.02 0.75 16 40 H 0.11 2.07 6.04 -2.91 -0.02 2.06 16 41 H 0.14 1.37 7.92 -2.92 -0.02 1.35 16 42 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 43 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 44 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 45 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 46 H 0.12 2.10 6.17 -2.91 -0.02 2.08 16 47 H 0.07 2.40 8.14 -2.38 -0.02 2.39 16 48 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 50 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 Total: -1.00 -77.48 410.64 2.78 -74.70 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.13 Total: 18.31 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 5.73 Total: 1.50 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -4.10 Total: -107.61 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -1.02 Total: -33.23 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -77.48 2.78 -74.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610785901.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.214 kcal (2) G-P(sol) polarization free energy of solvation -77.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds