Wall clock time and date at job start Wed Apr 1 2020 03:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.50704 * 109.46888 * 308.61647 * 3 2 1 5 5 C 1.38269 * 119.94105 * 90.00337 * 4 3 2 6 6 C 1.38147 * 120.04954 * 179.97438 * 5 4 3 7 7 C 1.38726 * 119.94781 * 359.97438 * 6 5 4 8 8 O 1.35900 * 120.05643 * 180.02562 * 7 6 5 9 9 C 1.42899 * 117.00121 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47308 * 179.97438 * 9 8 7 11 11 H 1.09006 * 109.46892 * 55.00285 * 10 9 8 12 12 O 1.42895 * 109.47467 * 295.00396 * 10 9 8 13 13 C 1.53004 * 109.47163 * 174.99730 * 10 9 8 14 14 N 1.46899 * 109.47079 * 178.77635 * 13 10 9 15 15 C 1.46851 * 110.99898 * 51.94672 * 14 13 10 16 16 C 1.53036 * 109.52143 * 185.83875 * 15 14 13 17 17 C 1.53125 * 109.27990 * 300.82083 * 16 15 14 18 18 C 1.50701 * 109.57482 * 177.59185 * 17 16 15 19 19 H 1.07996 * 120.00083 * 240.28640 * 18 17 16 20 20 C 1.37879 * 119.99948 * 60.28368 * 18 17 16 21 21 N 1.31518 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00181 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47118 * 59.99992 * 22 20 18 24 24 H 1.48496 * 109.47429 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47141 * 300.00514 * 22 20 18 26 26 C 1.53118 * 109.15877 * 57.65730 * 17 16 15 27 27 C 1.46852 * 111.00091 * 176.15713 * 14 13 10 28 28 C 1.38738 * 119.89031 * 0.27650 * 7 6 5 29 29 C 1.38150 * 119.93722 * 359.46978 * 28 7 6 30 30 H 1.09000 * 109.46739 * 188.61459 * 3 2 1 31 31 H 1.08995 * 109.46775 * 68.61267 * 3 2 1 32 32 H 1.08000 * 119.97374 * 0.02562 * 5 4 3 33 33 H 1.08005 * 120.02504 * 179.97438 * 6 5 4 34 34 H 1.09006 * 109.47271 * 59.99991 * 9 8 7 35 35 H 1.09007 * 109.46977 * 300.00350 * 9 8 7 36 36 H 0.96708 * 113.99395 * 299.99681 * 12 10 9 37 37 H 1.08997 * 109.47734 * 298.77744 * 13 10 9 38 38 H 1.08999 * 109.46975 * 58.78403 * 13 10 9 39 39 H 1.09000 * 109.45991 * 305.85111 * 15 14 13 40 40 H 1.08995 * 109.46212 * 65.82297 * 15 14 13 41 41 H 1.09002 * 109.50148 * 180.88196 * 16 15 14 42 42 H 1.08997 * 109.54057 * 60.78031 * 16 15 14 43 43 H 1.08996 * 109.52117 * 297.74756 * 17 16 15 44 44 H 0.96996 * 120.00347 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.49987 * 182.40758 * 26 17 16 46 46 H 1.08994 * 109.53568 * 62.30726 * 26 17 16 47 47 H 1.09002 * 109.45752 * 294.17787 * 27 14 13 48 48 H 1.08997 * 109.46224 * 54.15522 * 27 14 13 49 49 H 1.07996 * 120.03014 * 179.72032 * 28 7 6 50 50 H 1.07999 * 119.96786 * 180.23084 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1107 -0.8859 1.1102 5 6 3.3414 -2.2280 0.8708 6 6 3.8027 -3.0426 1.8867 7 6 4.0350 -2.5130 3.1476 8 8 4.4893 -3.3122 4.1485 9 6 4.7067 -2.6987 5.4206 10 6 5.2131 -3.7475 6.4128 11 1 6.1007 -4.2329 6.0070 12 8 4.1946 -4.7252 6.6337 13 6 5.5642 -3.0683 7.7381 14 7 6.0226 -4.0794 8.7001 15 6 7.0899 -4.9077 8.1245 16 6 7.4404 -6.0374 9.0956 17 6 7.8977 -5.4357 10.4273 18 6 8.1882 -6.5423 11.4081 19 1 7.6364 -6.6015 12.3346 20 6 9.1585 -7.4794 11.1227 21 7 9.8309 -7.4071 9.9947 22 14 9.5192 -8.8507 12.3387 23 1 8.2917 -9.6588 12.5518 24 1 10.5968 -9.7190 11.8003 25 1 9.9561 -8.2641 13.6311 26 6 6.7869 -4.5393 10.9815 27 6 6.4553 -3.4530 9.9559 28 6 3.7978 -1.1671 3.3867 29 6 3.3415 -0.3556 2.3660 30 1 2.9708 1.0169 0.1539 31 1 2.9715 -0.3739 -0.9569 32 1 3.1616 -2.6396 -0.1114 33 1 3.9824 -4.0910 1.6993 34 1 3.7702 -2.2765 5.7852 35 1 5.4478 -1.9058 5.3197 36 1 3.3738 -4.3633 6.9951 37 1 6.3563 -2.3379 7.5735 38 1 4.6819 -2.5647 8.1331 39 1 6.7502 -5.3329 7.1801 40 1 7.9724 -4.2925 7.9492 41 1 8.2434 -6.6427 8.6750 42 1 6.5624 -6.6617 9.2608 43 1 8.7989 -4.8434 10.2691 44 1 10.5138 -8.0661 9.7940 45 1 7.1230 -4.0743 11.9083 46 1 5.8980 -5.1390 11.1768 47 1 7.3409 -2.8446 9.7719 48 1 5.6548 -2.8218 10.3416 49 1 3.9735 -0.7534 4.3686 50 1 3.1602 0.6930 2.5505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611687990.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:21 Heat of formation + Delta-G solvation = -39.359034 kcal Electronic energy + Delta-G solvation = -28841.855920 eV Core-core repulsion = 24834.039794 eV Total energy + Delta-G solvation = -4007.816126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.63268 -39.06982 -38.21559 -36.92326 -36.42520 -33.79924 -32.80647 -31.71194 -31.45925 -30.03171 -29.81305 -27.69477 -26.43316 -24.65235 -23.27794 -22.57092 -22.04298 -21.56802 -20.67499 -18.63495 -18.58529 -18.07277 -17.13490 -16.67269 -16.33911 -16.13350 -15.82467 -15.19329 -15.06127 -14.88963 -14.65830 -14.40375 -14.20463 -13.89165 -13.78024 -13.68971 -13.34914 -13.18817 -12.95868 -12.85512 -12.56547 -12.45483 -12.16551 -12.08414 -11.83914 -11.70050 -11.52137 -11.30723 -11.20677 -10.91476 -10.78387 -10.71254 -10.49467 -10.20907 -10.05521 -9.89372 -9.43036 -9.39412 -8.95136 -8.67154 -8.53679 -8.26376 -7.78347 -5.94558 -3.99806 0.88779 0.93335 2.35256 2.36070 2.76837 3.21484 3.34937 3.39450 3.42322 3.75553 4.15000 4.28108 4.30529 4.40393 4.45982 4.47692 4.63532 4.69047 4.80751 4.82459 4.91425 4.98361 5.04512 5.18547 5.20803 5.27430 5.35967 5.54529 5.58832 5.67568 5.80027 5.83508 5.93314 5.96114 6.07154 6.08131 6.19542 6.29724 6.32568 6.62450 6.64862 6.85404 7.05555 7.08412 7.13886 7.17500 7.44568 7.59234 7.64795 7.73719 7.84984 8.07791 8.18558 8.51048 9.03445 9.64419 11.11655 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.030202 B = 0.001612 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.874790 B =17369.998735 C =17799.769861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.207 3.793 3 C 0.024 3.976 4 C -0.141 4.141 5 C -0.064 4.064 6 C -0.151 4.151 7 C 0.143 3.857 8 O -0.299 6.299 9 C 0.028 3.972 10 C 0.110 3.890 11 H 0.113 0.887 12 O -0.533 6.533 13 C 0.027 3.973 14 N -0.523 5.523 15 C 0.052 3.948 16 C -0.102 4.102 17 C 0.048 3.952 18 C -0.511 4.511 19 H 0.053 0.947 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.278 1.278 26 C -0.106 4.106 27 C 0.060 3.940 28 C -0.211 4.211 29 C -0.064 4.064 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.370 0.630 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.019 0.981 41 H 0.092 0.908 42 H 0.045 0.955 43 H 0.019 0.981 44 H 0.260 0.740 45 H 0.049 0.951 46 H 0.057 0.943 47 H 0.023 0.977 48 H 0.056 0.944 49 H 0.130 0.870 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 16.824 -18.739 27.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.110 4.110 3 C -0.016 4.016 4 C -0.143 4.143 5 C -0.083 4.083 6 C -0.170 4.170 7 C 0.096 3.904 8 O -0.212 6.212 9 C -0.048 4.048 10 C 0.050 3.950 11 H 0.130 0.870 12 O -0.337 6.337 13 C -0.102 4.102 14 N -0.248 5.248 15 C -0.075 4.075 16 C -0.141 4.141 17 C 0.029 3.971 18 C -0.549 4.549 19 H 0.072 0.928 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.204 1.204 26 C -0.144 4.144 27 C -0.067 4.067 28 C -0.230 4.230 29 C -0.082 4.082 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.217 0.783 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.038 0.962 41 H 0.110 0.890 42 H 0.063 0.937 43 H 0.037 0.963 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.042 0.958 48 H 0.074 0.926 49 H 0.148 0.852 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.181 15.810 -18.950 27.522 hybrid contribution 1.002 0.500 0.825 1.391 sum -11.179 16.311 -18.125 26.824 Atomic orbital electron populations 1.81255 1.13038 1.08492 1.08411 1.29161 0.95144 0.93380 0.93358 1.18081 0.81572 1.02170 0.99788 1.19267 1.06016 0.94373 0.94628 1.20869 0.96225 0.92327 0.98837 1.20486 1.04748 1.01226 0.90527 1.19190 0.92936 0.89462 0.88776 1.86191 1.79673 1.36767 1.18541 1.23699 1.01163 0.97422 0.82550 1.22010 0.92654 0.88779 0.91518 0.86971 1.86705 1.25547 1.35130 1.86296 1.22640 1.00360 0.94413 0.92831 1.61976 1.38878 1.20525 1.03411 1.22389 0.90247 0.95975 0.98855 1.21637 1.00728 0.95605 0.96101 1.18687 0.91980 0.93564 0.92856 1.21166 1.19088 1.10792 1.03896 0.92832 1.24962 0.95947 0.97760 0.95292 1.69863 1.24082 1.36017 1.23163 0.86696 0.77877 0.82153 0.81470 1.20294 1.21382 1.20421 1.21671 1.00620 0.96278 0.95797 1.22142 0.97225 0.96671 0.90675 1.21280 1.07601 0.93224 1.00882 1.20830 0.96068 0.99645 0.91629 0.86511 0.86425 0.84982 0.84704 0.91549 0.91064 0.78336 0.94502 0.90836 0.91776 0.96240 0.89003 0.93664 0.96268 0.93058 0.93194 0.92399 0.95849 0.92553 0.85212 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.57 18.54 42.15 0.78 -3.79 16 2 C 0.21 1.41 15.41 -20.76 -0.32 1.09 16 3 C 0.02 0.06 5.83 -30.67 -0.18 -0.12 16 4 C -0.14 -0.76 5.09 -104.60 -0.53 -1.29 16 5 C -0.06 -0.40 9.69 -39.60 -0.38 -0.78 16 6 C -0.15 -1.28 9.99 -39.43 -0.39 -1.67 16 7 C 0.14 1.37 6.69 -39.22 -0.26 1.10 16 8 O -0.30 -3.37 10.10 -24.28 -0.25 -3.61 16 9 C 0.03 0.26 4.37 37.15 0.16 0.42 16 10 C 0.11 1.32 2.66 -26.73 -0.07 1.25 16 11 H 0.11 1.54 6.27 -51.93 -0.33 1.21 16 12 O -0.53 -7.27 13.15 -40.09 -0.53 -7.80 16 13 C 0.03 0.33 4.80 -3.82 -0.02 0.31 16 14 N -0.52 -8.85 4.61 -234.67 -1.08 -9.93 16 15 C 0.05 1.01 5.04 -3.83 -0.02 0.99 16 16 C -0.10 -2.44 5.12 -26.65 -0.14 -2.57 16 17 C 0.05 1.18 2.16 -91.65 -0.20 0.98 16 18 C -0.51 -14.09 8.57 -34.44 -0.29 -14.38 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 21 N -0.89 -25.47 11.37 55.43 0.63 -24.84 16 22 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C -0.11 -2.20 5.32 -26.65 -0.14 -2.34 16 27 C 0.06 1.04 5.46 -3.83 -0.02 1.02 16 28 C -0.21 -1.63 9.04 -39.43 -0.36 -1.98 16 29 C -0.06 -0.38 9.69 -39.61 -0.38 -0.77 16 30 H 0.12 0.03 8.08 -51.93 -0.42 -0.39 16 31 H 0.12 0.03 8.08 -51.93 -0.42 -0.39 16 32 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 33 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.07 0.50 7.65 -51.93 -0.40 0.10 16 35 H 0.07 0.55 7.67 -51.92 -0.40 0.15 16 36 H 0.37 3.70 9.05 45.56 0.41 4.11 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.19 5.87 -51.93 -0.30 0.89 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 2.43 6.18 -51.93 -0.32 2.11 16 42 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 49 H 0.13 0.83 6.30 -52.49 -0.33 0.50 16 50 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 LS Contribution 407.49 15.07 6.14 6.14 Total: -1.00 -33.60 407.49 -10.08 -43.69 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.12 Total: 0.89 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -3.64 Total: -17.13 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.33 Total: -38.56 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -0.77 Total: -11.41 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.60 -10.08 -43.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611687990.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.329 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds