Wall clock time and date at job start Wed Apr 1 2020 03:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.50704 * 109.46888 * 308.61647 * 3 2 1 5 5 C 1.38269 * 119.94105 * 90.00337 * 4 3 2 6 6 C 1.38147 * 120.04954 * 179.97438 * 5 4 3 7 7 C 1.38726 * 119.94781 * 359.97438 * 6 5 4 8 8 O 1.35900 * 120.05643 * 180.02562 * 7 6 5 9 9 C 1.42899 * 117.00121 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47308 * 179.97438 * 9 8 7 11 11 H 1.09006 * 109.46892 * 55.00285 * 10 9 8 12 12 O 1.42895 * 109.47467 * 295.00396 * 10 9 8 13 13 C 1.53004 * 109.47163 * 174.99730 * 10 9 8 14 14 N 1.46899 * 109.47079 * 178.77635 * 13 10 9 15 15 C 1.46851 * 110.99898 * 51.94672 * 14 13 10 16 16 C 1.53036 * 109.52143 * 185.83875 * 15 14 13 17 17 C 1.53125 * 109.27990 * 300.82083 * 16 15 14 18 18 C 1.50701 * 109.57482 * 177.59185 * 17 16 15 19 19 H 1.07996 * 120.00083 * 240.28640 * 18 17 16 20 20 C 1.37879 * 119.99948 * 60.28368 * 18 17 16 21 21 N 1.31518 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00181 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47118 * 59.99992 * 22 20 18 24 24 H 1.48496 * 109.47429 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47141 * 300.00514 * 22 20 18 26 26 C 1.53118 * 109.15877 * 57.65730 * 17 16 15 27 27 C 1.46852 * 111.00091 * 176.15713 * 14 13 10 28 28 C 1.38738 * 119.89031 * 0.27650 * 7 6 5 29 29 C 1.38150 * 119.93722 * 359.46978 * 28 7 6 30 30 H 1.09000 * 109.46739 * 188.61459 * 3 2 1 31 31 H 1.08995 * 109.46775 * 68.61267 * 3 2 1 32 32 H 1.08000 * 119.97374 * 0.02562 * 5 4 3 33 33 H 1.08005 * 120.02504 * 179.97438 * 6 5 4 34 34 H 1.09006 * 109.47271 * 59.99991 * 9 8 7 35 35 H 1.09007 * 109.46977 * 300.00350 * 9 8 7 36 36 H 0.96708 * 113.99395 * 299.99681 * 12 10 9 37 37 H 1.08997 * 109.47734 * 298.77744 * 13 10 9 38 38 H 1.08999 * 109.46975 * 58.78403 * 13 10 9 39 39 H 1.09000 * 109.45991 * 305.85111 * 15 14 13 40 40 H 1.08995 * 109.46212 * 65.82297 * 15 14 13 41 41 H 1.09002 * 109.50148 * 180.88196 * 16 15 14 42 42 H 1.08997 * 109.54057 * 60.78031 * 16 15 14 43 43 H 1.08996 * 109.52117 * 297.74756 * 17 16 15 44 44 H 0.96996 * 120.00347 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.49987 * 182.40758 * 26 17 16 46 46 H 1.08994 * 109.53568 * 62.30726 * 26 17 16 47 47 H 1.09002 * 109.45752 * 294.17787 * 27 14 13 48 48 H 1.08997 * 109.46224 * 54.15522 * 27 14 13 49 49 H 1.07996 * 120.03014 * 179.72032 * 28 7 6 50 50 H 1.07999 * 119.96786 * 180.23084 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1107 -0.8859 1.1102 5 6 3.3414 -2.2280 0.8708 6 6 3.8027 -3.0426 1.8867 7 6 4.0350 -2.5130 3.1476 8 8 4.4893 -3.3122 4.1485 9 6 4.7067 -2.6987 5.4206 10 6 5.2131 -3.7475 6.4128 11 1 6.1007 -4.2329 6.0070 12 8 4.1946 -4.7252 6.6337 13 6 5.5642 -3.0683 7.7381 14 7 6.0226 -4.0794 8.7001 15 6 7.0899 -4.9077 8.1245 16 6 7.4404 -6.0374 9.0956 17 6 7.8977 -5.4357 10.4273 18 6 8.1882 -6.5423 11.4081 19 1 7.6364 -6.6015 12.3346 20 6 9.1585 -7.4794 11.1227 21 7 9.8309 -7.4071 9.9947 22 14 9.5192 -8.8507 12.3387 23 1 8.2917 -9.6588 12.5518 24 1 10.5968 -9.7190 11.8003 25 1 9.9561 -8.2641 13.6311 26 6 6.7869 -4.5393 10.9815 27 6 6.4553 -3.4530 9.9559 28 6 3.7978 -1.1671 3.3867 29 6 3.3415 -0.3556 2.3660 30 1 2.9708 1.0169 0.1539 31 1 2.9715 -0.3739 -0.9569 32 1 3.1616 -2.6396 -0.1114 33 1 3.9824 -4.0910 1.6993 34 1 3.7702 -2.2765 5.7852 35 1 5.4478 -1.9058 5.3197 36 1 3.3738 -4.3633 6.9951 37 1 6.3563 -2.3379 7.5735 38 1 4.6819 -2.5647 8.1331 39 1 6.7502 -5.3329 7.1801 40 1 7.9724 -4.2925 7.9492 41 1 8.2434 -6.6427 8.6750 42 1 6.5624 -6.6617 9.2608 43 1 8.7989 -4.8434 10.2691 44 1 10.5138 -8.0661 9.7940 45 1 7.1230 -4.0743 11.9083 46 1 5.8980 -5.1390 11.1768 47 1 7.3409 -2.8446 9.7719 48 1 5.6548 -2.8218 10.3416 49 1 3.9735 -0.7534 4.3686 50 1 3.1602 0.6930 2.5505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611687990.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:20 Heat of formation + Delta-G solvation = -61.874536 kcal Electronic energy + Delta-G solvation = -28842.832266 eV Core-core repulsion = 24834.039794 eV Total energy + Delta-G solvation = -4008.792472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.23972 -40.19036 -39.06061 -37.83988 -37.23778 -35.53401 -33.44200 -33.19663 -32.01019 -31.48891 -31.10630 -28.46370 -27.68669 -25.97763 -24.36898 -23.73491 -23.19404 -22.38089 -21.88252 -20.34998 -19.20555 -18.57125 -18.42663 -17.91044 -17.47245 -16.75107 -16.64910 -16.45474 -16.17085 -15.90251 -15.71783 -15.36953 -15.15256 -14.91623 -14.67464 -14.49487 -14.36665 -14.25606 -14.20508 -13.91834 -13.75488 -13.63930 -13.20469 -13.08774 -12.86612 -12.80882 -12.54581 -12.44241 -12.34832 -12.27187 -12.07895 -11.91045 -11.86293 -11.82728 -11.58615 -11.31167 -10.97887 -10.78638 -10.58485 -10.35991 -9.92115 -9.13778 -9.08984 -8.07176 -6.20567 0.38101 0.43714 1.41243 1.42955 1.50300 1.85803 1.89363 2.08721 2.44293 2.72502 3.04193 3.19658 3.39208 3.54876 3.71387 3.85626 3.93762 3.95401 4.01623 4.06064 4.21735 4.28427 4.33102 4.33272 4.43447 4.46847 4.48506 4.54229 4.69330 4.71120 4.78897 4.82999 4.89971 4.90795 4.97214 5.02378 5.13783 5.14387 5.24616 5.31807 5.35155 5.43195 5.58368 5.62209 5.63532 5.86029 6.01190 6.02984 6.28104 6.33613 6.41843 6.47871 6.68583 6.91122 6.92637 7.47091 8.97158 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.030202 B = 0.001612 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.874790 B =17369.998735 C =17799.769861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.237 3.763 3 C 0.028 3.972 4 C -0.136 4.136 5 C -0.066 4.066 6 C -0.175 4.175 7 C 0.114 3.886 8 O -0.329 6.329 9 C 0.035 3.965 10 C 0.113 3.887 11 H 0.086 0.914 12 O -0.560 6.560 13 C 0.030 3.970 14 N -0.533 5.533 15 C 0.068 3.932 16 C -0.094 4.094 17 C 0.044 3.956 18 C -0.535 4.535 19 H 0.051 0.949 20 C 0.012 3.988 21 N -0.918 5.918 22 Si 0.953 3.047 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.100 4.100 27 C 0.067 3.933 28 C -0.219 4.219 29 C -0.066 4.066 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.385 0.615 37 H 0.051 0.949 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.014 0.986 41 H 0.057 0.943 42 H 0.025 0.975 43 H -0.011 1.011 44 H 0.260 0.740 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.024 0.976 48 H 0.093 0.907 49 H 0.142 0.858 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.659 19.420 -19.486 29.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.079 4.079 3 C -0.011 4.011 4 C -0.138 4.138 5 C -0.084 4.084 6 C -0.194 4.194 7 C 0.069 3.931 8 O -0.243 6.243 9 C -0.040 4.040 10 C 0.053 3.947 11 H 0.104 0.896 12 O -0.366 6.366 13 C -0.098 4.098 14 N -0.258 5.258 15 C -0.059 4.059 16 C -0.132 4.132 17 C 0.025 3.975 18 C -0.573 4.573 19 H 0.069 0.931 20 C -0.187 4.187 21 N -0.557 5.557 22 Si 0.778 3.222 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.195 1.195 26 C -0.138 4.138 27 C -0.061 4.061 28 C -0.237 4.237 29 C -0.084 4.084 30 H 0.170 0.830 31 H 0.169 0.831 32 H 0.173 0.827 33 H 0.144 0.856 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.234 0.766 37 H 0.070 0.930 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.032 0.968 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.007 0.993 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.042 0.958 48 H 0.111 0.889 49 H 0.160 0.840 50 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.114 18.430 -19.697 29.993 hybrid contribution 1.303 -0.299 1.004 1.672 sum -11.811 18.131 -18.693 28.595 Atomic orbital electron populations 1.81292 1.15468 1.11087 1.10900 1.29871 0.95749 0.91129 0.91148 1.18446 0.78594 1.03751 1.00292 1.19550 1.04711 0.94277 0.95266 1.21193 0.95259 0.92720 0.99214 1.20672 1.06046 1.01449 0.91213 1.19457 0.94548 0.90387 0.88727 1.86126 1.80490 1.38178 1.19457 1.23589 1.02538 0.96362 0.81522 1.21892 0.91674 0.88997 0.92091 0.89609 1.86662 1.26648 1.36619 1.86679 1.22732 1.01777 0.93394 0.91905 1.61871 1.37265 1.22264 1.04412 1.22051 0.91132 0.95019 0.97734 1.21388 0.98480 0.96591 0.96753 1.18665 0.92300 0.93393 0.93122 1.21582 1.19346 1.11947 1.04444 0.93105 1.25747 0.95862 1.00078 0.96977 1.70012 1.24392 1.36735 1.24603 0.85700 0.77747 0.79272 0.79460 1.19851 1.20969 1.19545 1.21538 0.98494 0.96644 0.97138 1.22072 0.98655 0.95462 0.89899 1.21490 1.07638 0.92548 1.02070 1.21232 0.94989 1.00824 0.91393 0.83002 0.83133 0.82746 0.85602 0.89438 0.89441 0.76647 0.93042 0.87673 0.91274 0.96762 0.92449 0.95627 0.99331 0.93136 0.92705 0.93219 0.95804 0.88854 0.84046 0.82813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -10.23 18.54 20.01 0.37 -9.85 16 2 C 0.24 2.63 15.41 89.44 1.38 4.01 16 3 C 0.03 0.03 5.83 28.04 0.16 0.19 16 4 C -0.14 -1.03 5.09 -19.85 -0.10 -1.13 16 5 C -0.07 -0.69 9.69 22.26 0.22 -0.47 16 6 C -0.18 -2.91 9.99 22.36 0.22 -2.69 16 7 C 0.11 2.12 6.69 22.51 0.15 2.27 16 8 O -0.33 -7.37 10.10 -87.78 -0.89 -8.25 16 9 C 0.04 0.59 4.37 71.98 0.31 0.91 16 10 C 0.11 2.59 2.66 30.59 0.08 2.67 16 11 H 0.09 2.40 6.27 -2.38 -0.01 2.38 16 12 O -0.56 -14.97 13.15 -144.34 -1.90 -16.87 16 13 C 0.03 0.66 4.80 86.30 0.41 1.08 16 14 N -0.53 -17.35 4.61 -896.35 -4.13 -21.48 16 15 C 0.07 2.70 5.04 86.32 0.43 3.13 16 16 C -0.09 -4.66 5.12 30.65 0.16 -4.50 16 17 C 0.04 2.25 2.16 -11.46 -0.02 2.22 16 18 C -0.54 -30.35 8.57 25.60 0.22 -30.13 16 19 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 20 C 0.01 0.67 5.31 84.65 0.45 1.11 16 21 N -0.92 -54.24 11.37 21.45 0.24 -54.00 16 22 Si 0.95 44.61 29.54 68.60 2.03 46.64 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 C -0.10 -4.15 5.32 30.65 0.16 -3.98 16 27 C 0.07 2.17 5.46 86.33 0.47 2.64 16 28 C -0.22 -2.91 9.04 22.37 0.20 -2.71 16 29 C -0.07 -0.59 9.69 22.25 0.22 -0.38 16 30 H 0.15 -0.77 8.08 -2.39 -0.02 -0.79 16 31 H 0.15 -0.71 8.08 -2.39 -0.02 -0.73 16 32 H 0.15 0.79 8.06 -2.91 -0.02 0.76 16 33 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.09 1.07 7.65 -2.38 -0.02 1.05 16 35 H 0.09 1.15 7.67 -2.38 -0.02 1.13 16 36 H 0.38 7.19 9.05 -74.05 -0.67 6.52 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 2.65 5.87 -2.39 -0.01 2.64 16 40 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 3.22 6.18 -2.39 -0.01 3.20 16 42 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 43 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 44 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 45 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.09 2.41 8.12 -2.39 -0.02 2.39 16 49 H 0.14 1.42 6.30 -2.91 -0.02 1.40 16 50 H 0.15 0.50 8.06 -2.91 -0.02 0.48 16 Total: -1.00 -78.21 407.49 1.13 -77.08 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.28 Total: 12.50 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 5.13 Total: -25.76 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -3.51 Total: -85.33 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -2.78 Total: -25.12 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -78.21 1.13 -77.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611687990.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.205 kcal (2) G-P(sol) polarization free energy of solvation -78.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds