Wall clock time and date at job start Wed Apr 1 2020 03:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86801 * 119.99746 * 2 1 4 4 H 1.48506 * 109.47087 * 89.99897 * 3 2 1 5 5 H 1.48495 * 109.47129 * 209.99736 * 3 2 1 6 6 H 1.48497 * 109.47341 * 329.99874 * 3 2 1 7 7 C 1.39939 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00704 * 17.46397 * 7 2 1 9 9 C 1.41400 * 119.99916 * 197.46425 * 7 2 1 10 10 C 1.40735 * 120.24574 * 29.85939 * 9 7 2 11 11 C 1.37594 * 119.74854 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24828 * 0.02562 * 11 10 9 13 13 C 1.38618 * 120.49993 * 0.02562 * 12 11 10 14 14 C 1.37645 * 120.24450 * 359.66636 * 13 12 11 15 15 C 1.50695 * 120.12473 * 180.32372 * 14 13 12 16 16 C 1.50707 * 109.47086 * 265.30626 * 15 14 13 17 17 O 1.21280 * 119.99916 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99904 * 180.02562 * 16 15 14 19 19 C 1.46496 * 119.99630 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.46944 * 174.91636 * 19 18 16 21 21 N 1.46907 * 115.55172 * 272.21667 * 20 19 18 22 22 C 1.47021 * 110.99546 * 58.32329 * 21 20 19 23 23 C 1.53100 * 109.25544 * 177.60876 * 22 21 20 24 24 O 1.43023 * 109.25644 * 56.84866 * 23 22 21 25 25 C 1.43013 * 113.73822 * 301.32488 * 24 23 22 26 26 C 1.47011 * 111.00164 * 294.69252 * 21 20 19 27 27 C 1.53007 * 117.50180 * 126.54940 * 20 19 18 28 28 C 1.53002 * 117.50199 * 57.88665 * 20 19 18 29 29 H 0.97002 * 120.00086 * 174.91973 * 1 2 3 30 30 H 1.08008 * 120.12502 * 359.97438 * 10 9 7 31 31 H 1.07995 * 119.87930 * 180.02562 * 11 10 9 32 32 H 1.08002 * 119.75002 * 179.97438 * 12 11 10 33 33 H 1.07994 * 119.87145 * 179.97438 * 13 12 11 34 34 H 1.09002 * 109.47448 * 25.30058 * 15 14 13 35 35 H 1.08996 * 109.47786 * 145.30625 * 15 14 13 36 36 H 0.96996 * 120.00264 * 0.02562 * 18 16 15 37 37 H 1.09001 * 109.47132 * 294.91552 * 19 18 16 38 38 H 1.09003 * 109.47524 * 54.91749 * 19 18 16 39 39 H 1.09002 * 109.50793 * 297.54038 * 22 21 20 40 40 H 1.09000 * 109.50649 * 57.67315 * 22 21 20 41 41 H 1.08996 * 109.50295 * 296.91619 * 23 22 21 42 42 H 1.09000 * 109.54158 * 176.80131 * 23 22 21 43 43 H 1.08995 * 109.51218 * 298.73964 * 25 24 23 44 44 H 1.09000 * 109.53929 * 178.62577 * 25 24 23 45 45 H 1.09003 * 109.50319 * 302.32514 * 26 21 20 46 46 H 1.09005 * 109.50578 * 62.40623 * 26 21 20 47 47 H 1.09001 * 117.49114 * 359.97438 * 27 20 19 48 48 H 1.09001 * 117.49885 * 145.01844 * 27 20 19 49 49 H 1.09000 * 117.50010 * 214.97983 * 28 20 19 50 50 H 1.09002 * 117.49696 * 359.97438 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0465 1.4001 5 1 3.5397 1.4403 -0.7000 6 1 1.4396 2.6527 -0.7000 7 6 2.0079 -1.2119 0.0005 8 1 1.5053 -2.1259 -0.2797 9 6 3.3730 -1.2400 0.3681 10 6 3.8790 -0.3023 1.2875 11 6 5.2092 -0.3387 1.6375 12 6 6.0503 -1.2941 1.0876 13 6 5.5631 -2.2218 0.1802 14 6 4.2345 -2.2081 -0.1795 15 6 3.7062 -3.2226 -1.1606 16 6 3.7226 -2.6353 -2.5484 17 8 4.1235 -1.5041 -2.7234 18 7 3.2909 -3.3667 -3.5949 19 6 3.3064 -2.7955 -4.9439 20 6 2.8900 -3.8652 -5.9554 21 7 3.9785 -4.7039 -6.4749 22 6 4.6730 -5.4017 -5.3830 23 6 5.7575 -6.3077 -5.9719 24 8 6.6498 -5.5207 -6.7656 25 6 6.0069 -4.8278 -7.8388 26 6 4.9249 -3.9068 -7.2688 27 6 1.7420 -3.5273 -6.9088 28 6 1.5210 -4.5218 -5.7662 29 1 -0.4850 -0.8368 -0.0744 30 1 3.2259 0.4435 1.7161 31 1 5.5997 0.3796 2.3431 32 1 7.0932 -1.3150 1.3677 33 1 6.2273 -2.9612 -0.2422 34 1 4.3338 -4.1134 -1.1358 35 1 2.6844 -3.4905 -0.8916 36 1 2.9692 -4.2710 -3.4548 37 1 2.6094 -1.9589 -4.9922 38 1 4.3115 -2.4451 -5.1786 39 1 5.1315 -4.6705 -4.7173 40 1 3.9580 -6.0056 -4.8242 41 1 5.2940 -7.0723 -6.5953 42 1 6.3129 -6.7841 -5.1640 43 1 5.5507 -5.5493 -8.5165 44 1 6.7421 -4.2333 -8.3812 45 1 4.3938 -3.4195 -8.0865 46 1 5.3868 -3.1511 -6.6333 47 1 1.2831 -2.5430 -6.8150 48 1 1.7942 -3.9276 -7.9213 49 1 1.4280 -5.5759 -6.0276 50 1 0.9172 -4.1920 -4.9208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765119983.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:04 Heat of formation + Delta-G solvation = -32.106625 kcal Electronic energy + Delta-G solvation = -30954.380581 eV Core-core repulsion = 26946.878943 eV Total energy + Delta-G solvation = -4007.501638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.39502 -39.13947 -38.04369 -37.34948 -34.07804 -33.66137 -33.63779 -31.85584 -31.43997 -30.13103 -28.07684 -27.03735 -25.77134 -24.48859 -24.30356 -22.45420 -21.41611 -21.25859 -20.39238 -19.80488 -19.15160 -18.07441 -17.20576 -16.38936 -16.28996 -15.88549 -15.57674 -15.28519 -15.25963 -15.14041 -14.87135 -14.67781 -14.18291 -13.84981 -13.74809 -13.63129 -13.09614 -12.72408 -12.66205 -12.58679 -12.41666 -12.08363 -11.89403 -11.79940 -11.69968 -11.61895 -11.23685 -11.21038 -10.88169 -10.77142 -10.71240 -10.33126 -10.25212 -10.13070 -9.93279 -9.69282 -9.25542 -9.19085 -8.93775 -8.82712 -8.59975 -7.63894 -7.56777 -7.14961 -4.47628 2.59963 2.77365 3.23529 3.27622 3.29618 3.33683 3.45814 3.61979 3.68440 3.82302 4.11718 4.41810 4.58858 4.63955 4.64321 4.74762 4.77609 4.88463 4.98692 5.05803 5.21645 5.26866 5.33668 5.35819 5.44911 5.52353 5.55884 5.60933 5.68017 5.68539 5.72791 5.84552 5.86340 5.95358 6.00744 6.09159 6.22253 6.23970 6.56137 6.58539 6.72920 6.75795 6.77495 6.86756 7.08527 7.38099 7.53701 7.69393 7.73741 7.87440 7.91010 8.03824 8.42685 8.62936 8.83156 8.84695 10.10082 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013317 B = 0.003264 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.080351 B = 8575.065693 C = 9783.124751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.048 3.952 3 Si 1.069 2.931 4 H -0.279 1.279 5 H -0.258 1.258 6 H -0.293 1.293 7 C -0.514 4.514 8 H 0.074 0.926 9 C 0.116 3.884 10 C -0.244 4.244 11 C -0.077 4.077 12 C -0.244 4.244 13 C -0.068 4.068 14 C -0.171 4.171 15 C -0.070 4.070 16 C 0.518 3.482 17 O -0.517 6.517 18 N -0.741 5.741 19 C 0.136 3.864 20 C 0.011 3.989 21 N -0.497 5.497 22 C 0.015 3.985 23 C 0.065 3.935 24 O -0.385 6.385 25 C 0.066 3.934 26 C 0.015 3.985 27 C -0.147 4.147 28 C -0.153 4.153 29 H 0.282 0.718 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.394 0.606 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.049 0.951 47 H 0.100 0.900 48 H 0.102 0.898 49 H 0.102 0.898 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 -12.010 -14.430 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.170 4.170 3 Si 0.896 3.104 4 H -0.206 1.206 5 H -0.183 1.183 6 H -0.220 1.220 7 C -0.543 4.543 8 H 0.092 0.908 9 C 0.113 3.887 10 C -0.263 4.263 11 C -0.095 4.095 12 C -0.264 4.264 13 C -0.087 4.087 14 C -0.172 4.172 15 C -0.109 4.109 16 C 0.305 3.695 17 O -0.390 6.390 18 N -0.396 5.396 19 C 0.010 3.990 20 C -0.080 4.080 21 N -0.220 5.220 22 C -0.113 4.113 23 C -0.012 4.012 24 O -0.304 6.304 25 C -0.012 4.012 26 C -0.113 4.113 27 C -0.185 4.185 28 C -0.190 4.190 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.228 0.772 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.076 0.924 44 H 0.116 0.884 45 H 0.105 0.895 46 H 0.067 0.933 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.120 0.880 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.748 -9.907 -14.788 18.422 hybrid contribution -0.098 -1.560 0.479 1.635 sum 4.651 -11.467 -14.309 18.918 Atomic orbital electron populations 1.70570 1.08002 1.32724 1.33422 1.27125 0.95522 1.04351 0.90036 0.83657 0.76126 0.73092 0.77546 1.20597 1.18272 1.22036 1.20501 0.94989 0.96355 1.42454 0.90810 1.17503 0.92843 0.89848 0.88523 1.21140 0.95706 1.05050 1.04367 1.20611 0.93886 0.96932 0.98055 1.20334 0.98085 1.01599 1.06335 1.20423 0.94115 0.97417 0.96714 1.19020 0.93319 1.02478 1.02403 1.20253 1.02763 0.97572 0.90341 1.21034 0.76220 0.85975 0.86287 1.90688 1.44866 1.18153 1.85274 1.46146 1.68670 1.18248 1.06568 1.21095 1.01946 0.94688 0.81297 1.21827 0.87948 0.97732 1.00475 1.62252 1.10418 1.27441 1.21932 1.22811 0.96819 0.98142 0.93509 1.22678 0.90944 0.92689 0.94915 1.88007 1.34489 1.63914 1.43947 1.22654 0.94719 0.94643 0.89139 1.22794 0.94124 0.95976 0.98418 1.23093 0.98891 1.00686 0.95819 1.23087 0.96040 0.99135 1.00783 0.90647 0.87780 0.88869 0.89003 0.89248 0.90627 0.88987 0.77233 0.91230 0.91453 0.92714 0.89660 0.92439 0.88376 0.92404 0.88443 0.89483 0.93291 0.88179 0.87991 0.87991 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.60 13.65 55.55 0.76 -21.84 16 2 C 0.05 1.31 5.41 -17.35 -0.09 1.21 16 3 Si 1.07 26.28 24.93 -169.99 -4.24 22.04 16 4 H -0.28 -6.43 6.45 56.52 0.36 -6.07 16 5 H -0.26 -6.66 7.04 56.52 0.40 -6.26 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.51 -13.83 8.79 -37.74 -0.33 -14.16 16 8 H 0.07 1.98 6.62 -52.49 -0.35 1.63 16 9 C 0.12 3.00 5.11 -106.82 -0.55 2.46 16 10 C -0.24 -6.15 7.28 -38.87 -0.28 -6.43 16 11 C -0.08 -1.75 10.02 -39.66 -0.40 -2.14 16 12 C -0.24 -5.35 10.05 -39.29 -0.39 -5.74 16 13 C -0.07 -1.50 9.66 -39.66 -0.38 -1.89 16 14 C -0.17 -3.98 4.43 -103.91 -0.46 -4.44 16 15 C -0.07 -1.33 5.36 -29.03 -0.16 -1.49 16 16 C 0.52 10.16 7.82 -10.98 -0.09 10.07 16 17 O -0.52 -12.68 16.03 5.56 0.09 -12.59 16 18 N -0.74 -10.87 4.46 -60.29 -0.27 -11.14 16 19 C 0.14 1.87 4.94 -4.05 -0.02 1.85 16 20 C 0.01 0.11 1.10 -131.59 -0.15 -0.03 16 21 N -0.50 -4.91 4.80 -218.64 -1.05 -5.96 16 22 C 0.02 0.15 4.82 -3.71 -0.02 0.13 16 23 C 0.06 0.59 7.01 37.21 0.26 0.86 16 24 O -0.39 -4.30 10.83 -35.23 -0.38 -4.69 16 25 C 0.07 0.58 7.01 37.21 0.26 0.84 16 26 C 0.01 0.14 5.46 -3.71 -0.02 0.12 16 27 C -0.15 -1.32 10.10 -26.69 -0.27 -1.59 16 28 C -0.15 -1.40 9.71 -26.69 -0.26 -1.66 16 29 H 0.28 7.47 8.73 -40.82 -0.36 7.11 16 30 H 0.10 2.61 4.52 -52.48 -0.24 2.37 16 31 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.08 1.18 8.05 -51.93 -0.42 0.77 16 35 H 0.09 1.75 6.52 -51.93 -0.34 1.41 16 36 H 0.39 4.69 7.89 -40.82 -0.32 4.37 16 37 H 0.07 1.06 7.89 -51.93 -0.41 0.65 16 38 H 0.07 1.03 6.51 -51.93 -0.34 0.70 16 39 H 0.05 0.67 6.98 -51.93 -0.36 0.31 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.05 0.57 6.69 -51.93 -0.35 0.22 16 47 H 0.10 0.91 8.04 -51.93 -0.42 0.49 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 395.28 15.07 5.96 5.96 Total: -1.00 -32.03 395.28 -10.28 -42.31 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.80 Total: 7.93 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -3.34 Total: -22.03 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: -0.56 Total: -38.94 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.29 Total: -17.27 kcal Atomic # 14 Polarization: 26.28 SS G_CDS: -4.24 Total: 22.04 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.03 -10.28 -42.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765119983.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.207 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds