Wall clock time and date at job start Wed Apr 1 2020 03:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86797 * 120.00144 * 2 1 4 4 H 1.48499 * 109.47168 * 274.64922 * 3 2 1 5 5 H 1.48499 * 109.47153 * 34.65188 * 3 2 1 6 6 H 1.48497 * 109.47164 * 154.65033 * 3 2 1 7 7 C 1.39941 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00010 * 162.83661 * 7 2 1 9 9 C 1.41393 * 120.00026 * 342.83717 * 7 2 1 10 10 C 1.40731 * 120.24749 * 334.60255 * 9 7 2 11 11 C 1.37591 * 119.74712 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.25212 * 0.02562 * 11 10 9 13 13 C 1.38620 * 120.49728 * 359.67749 * 12 11 10 14 14 C 1.37636 * 120.24687 * 0.60374 * 13 12 11 15 15 C 1.50699 * 120.12958 * 179.70183 * 14 13 12 16 16 C 1.50694 * 109.47075 * 264.72666 * 15 14 13 17 17 O 1.21287 * 119.99796 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00454 * 179.97438 * 16 15 14 19 19 C 1.46491 * 120.00199 * 179.97438 * 18 16 15 20 20 C 1.53006 * 109.47117 * 180.02562 * 19 18 16 21 21 H 1.09008 * 109.16957 * 304.99577 * 20 19 18 22 22 C 1.53780 * 109.14440 * 185.73098 * 20 19 18 23 23 N 1.45483 * 107.44511 * 293.65153 * 22 20 19 24 24 C 1.46112 * 118.10858 * 177.24277 * 23 22 20 25 25 C 1.54913 * 105.80506 * 152.40586 * 24 23 22 26 26 C 1.55422 * 104.96552 * 355.94521 * 25 24 23 27 27 C 1.48869 * 109.14999 * 297.46234 * 23 22 20 28 28 H 1.08996 * 111.74866 * 306.13630 * 27 23 22 29 29 C 1.52321 * 106.88884 * 67.69581 * 27 23 22 30 30 O 1.42647 * 109.18284 * 64.29001 * 20 19 18 31 31 H 0.97007 * 119.99870 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.12318 * 359.95498 * 10 9 7 33 33 H 1.08003 * 119.87591 * 179.97438 * 11 10 9 34 34 H 1.08000 * 119.75355 * 179.97438 * 12 11 10 35 35 H 1.07993 * 119.87341 * 180.30562 * 13 12 11 36 36 H 1.08997 * 109.47676 * 144.72036 * 15 14 13 37 37 H 1.09005 * 109.46751 * 24.71987 * 15 14 13 38 38 H 0.96996 * 119.99196 * 0.02562 * 18 16 15 39 39 H 1.08997 * 109.47350 * 59.99755 * 19 18 16 40 40 H 1.09005 * 109.47066 * 299.99714 * 19 18 16 41 41 H 1.09006 * 109.86046 * 53.13417 * 22 20 19 42 42 H 1.09000 * 109.86279 * 174.16544 * 22 20 19 43 43 H 1.08998 * 110.18267 * 33.32218 * 24 23 22 44 44 H 1.09003 * 110.24687 * 271.52384 * 24 23 22 45 45 H 1.09002 * 110.33860 * 237.07431 * 25 24 23 46 46 H 1.09005 * 110.43078 * 114.87021 * 25 24 23 47 47 H 1.08995 * 110.93637 * 219.52563 * 26 25 24 48 48 H 1.09003 * 110.96025 * 95.87205 * 26 25 24 49 49 H 1.09007 * 109.91723 * 179.31198 * 29 27 23 50 50 H 1.09003 * 109.91562 * 58.15283 * 29 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3915 2.1031 -1.3955 5 1 1.4924 2.6223 0.7961 6 1 3.5855 1.4137 0.5994 7 6 2.0079 -1.2120 -0.0005 8 1 3.0518 -1.2327 -0.2766 9 6 1.3480 -2.4093 0.3603 10 6 0.2206 -2.3716 1.2017 11 6 -0.4139 -3.5430 1.5458 12 6 0.0538 -4.7575 1.0673 13 6 1.1598 -4.8060 0.2330 14 6 1.8136 -3.6474 -0.1197 15 6 3.0197 -3.7039 -1.0215 16 6 4.2725 -3.7223 -0.1842 17 8 4.1937 -3.6921 1.0257 18 7 5.4805 -3.7725 -0.7798 19 6 6.6983 -3.7899 0.0342 20 6 7.9229 -3.8473 -0.8814 21 1 7.8307 -4.7041 -1.5491 22 6 9.1878 -4.0102 -0.0221 23 7 9.3474 -2.7906 0.7548 24 6 10.4543 -2.7202 1.7059 25 6 10.8107 -1.2175 1.8280 26 6 9.8905 -0.5020 0.7999 27 6 9.5508 -1.6440 -0.1726 28 1 10.3730 -1.8253 -0.8648 29 6 8.2407 -1.4444 -0.9236 30 8 7.9841 -2.6523 -1.6579 31 1 -0.4850 0.8401 0.0004 32 1 -0.1449 -1.4269 1.5761 33 1 -1.2791 -3.5165 2.1917 34 1 -0.4501 -5.6721 1.3429 35 1 1.5125 -5.7570 -0.1378 36 1 3.0294 -2.8284 -1.6707 37 1 2.9762 -4.6071 -1.6301 38 1 5.5434 -3.7963 -1.7474 39 1 6.6886 -4.6649 0.6840 40 1 6.7419 -2.8862 0.6422 41 1 9.0737 -4.8632 0.6469 42 1 10.0559 -4.1562 -0.6649 43 1 11.3101 -3.2802 1.3291 44 1 10.1451 -3.1132 2.6744 45 1 11.8586 -1.0550 1.5760 46 1 10.6040 -0.8581 2.8361 47 1 10.4258 0.2983 0.2890 48 1 8.9904 -0.1201 1.2818 49 1 8.3315 -0.6038 -1.6117 50 1 7.4317 -1.2607 -0.2165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777376082.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:20 Heat of formation + Delta-G solvation = -55.394457 kcal Electronic energy + Delta-G solvation = -30692.552389 eV Core-core repulsion = 26684.040915 eV Total energy + Delta-G solvation = -4008.511474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.67727 -39.00740 -37.47124 -36.99027 -34.22247 -33.54760 -32.96763 -31.61167 -30.51686 -29.46556 -29.29911 -27.06230 -25.56562 -24.88212 -24.43104 -22.26303 -21.21846 -20.85893 -20.40352 -19.91410 -19.12057 -17.13095 -16.96686 -16.45093 -16.32145 -15.85163 -15.67229 -15.40905 -15.14390 -14.67404 -14.41927 -14.22846 -14.03979 -13.79087 -13.44590 -13.37351 -13.04942 -12.87067 -12.72802 -12.52670 -12.16073 -11.88540 -11.68255 -11.53688 -11.48322 -11.47109 -11.34005 -11.07157 -10.93789 -10.90497 -10.88300 -10.62740 -10.52237 -10.33158 -9.83393 -9.40110 -9.30061 -9.08372 -9.02128 -8.66501 -8.48456 -7.23416 -7.20784 -6.67145 -4.25701 2.85120 3.05013 3.11135 3.17132 3.33600 3.40291 3.49625 3.60578 3.87886 3.99814 4.22736 4.42483 4.51460 4.71953 4.73981 4.78355 4.87056 4.98277 5.00409 5.22049 5.25314 5.34143 5.35695 5.49455 5.52942 5.58500 5.59418 5.70302 5.77425 5.87834 5.90908 5.93630 6.09314 6.19630 6.30492 6.37071 6.53113 6.54489 6.58919 6.87132 6.88012 6.91275 7.07411 7.16281 7.37701 7.50496 7.72620 7.99178 8.09130 8.17621 8.21251 8.39823 8.73081 8.99662 9.02161 9.09992 10.27218 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011419 B = 0.003232 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.447088 B = 8660.848518 C =10138.559704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.074 0.926 9 C 0.129 3.871 10 C -0.161 4.161 11 C -0.107 4.107 12 C -0.241 4.241 13 C -0.082 4.082 14 C -0.179 4.179 15 C -0.071 4.071 16 C 0.514 3.486 17 O -0.523 6.523 18 N -0.741 5.741 19 C 0.101 3.899 20 C 0.088 3.912 21 H 0.110 0.890 22 C 0.036 3.964 23 N -0.537 5.537 24 C 0.053 3.947 25 C -0.127 4.127 26 C -0.115 4.115 27 C 0.030 3.970 28 H 0.062 0.938 29 C 0.073 3.927 30 O -0.378 6.378 31 H 0.279 0.721 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.397 0.603 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.044 0.956 43 H 0.037 0.963 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.465 -2.494 -2.961 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.484 4.484 8 H 0.092 0.908 9 C 0.127 3.873 10 C -0.180 4.180 11 C -0.126 4.126 12 C -0.260 4.260 13 C -0.100 4.100 14 C -0.181 4.181 15 C -0.111 4.111 16 C 0.301 3.699 17 O -0.397 6.397 18 N -0.396 5.396 19 C -0.024 4.024 20 C 0.030 3.970 21 H 0.127 0.873 22 C -0.093 4.093 23 N -0.263 5.263 24 C -0.075 4.075 25 C -0.165 4.165 26 C -0.153 4.153 27 C -0.078 4.078 28 H 0.080 0.920 29 C -0.004 4.004 30 O -0.296 6.296 31 H 0.089 0.911 32 H 0.134 0.866 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.230 0.770 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.100 0.900 49 H 0.116 0.884 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.727 -2.315 -1.970 19.959 hybrid contribution 1.236 0.548 -0.512 1.446 sum 20.962 -1.766 -2.482 21.183 Atomic orbital electron populations 1.69834 1.07484 1.28952 1.35847 1.25869 0.94653 1.01091 0.92359 0.86424 0.80988 0.81162 0.78933 1.19620 1.20088 1.18489 1.19472 0.97478 0.91050 1.40446 0.90768 1.17334 0.90695 0.91278 0.88037 1.21275 0.99146 0.96668 1.00917 1.20660 0.98649 0.93468 0.99811 1.20294 1.01815 0.96066 1.07853 1.20297 0.96002 0.95555 0.98163 1.19058 0.99268 0.93962 1.05787 1.20258 0.90631 1.02671 0.97497 1.21191 0.84382 0.74935 0.89357 1.90678 1.86894 1.47360 1.14767 1.46055 1.05465 1.78134 1.09962 1.21708 0.83478 1.03342 0.93842 1.22527 0.93066 0.88331 0.93099 0.87282 1.22558 0.97311 0.93327 0.96075 1.62712 1.44119 1.03726 1.15744 1.22481 0.91447 0.96717 0.96820 1.22647 0.99235 0.94247 1.00348 1.22318 1.00345 0.96428 0.96187 1.23271 0.98126 0.92159 0.94277 0.92017 1.22642 0.95011 0.87018 0.95733 1.87910 1.92295 1.14635 1.34800 0.91057 0.86613 0.89660 0.89741 0.89812 0.88654 0.90747 0.76965 0.91534 0.90360 0.89296 0.93756 0.94439 0.90129 0.91512 0.90675 0.90816 0.90043 0.88401 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.92 10.98 55.55 0.61 -20.31 16 2 C 0.08 1.99 5.15 -17.34 -0.09 1.90 16 3 Si 0.90 19.20 29.59 -169.99 -5.03 14.17 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.45 -12.26 8.15 -37.74 -0.31 -12.57 16 8 H 0.07 1.96 6.66 -52.48 -0.35 1.61 16 9 C 0.13 3.54 5.57 -106.82 -0.59 2.95 16 10 C -0.16 -4.41 8.69 -38.88 -0.34 -4.75 16 11 C -0.11 -2.70 10.02 -39.66 -0.40 -3.09 16 12 C -0.24 -5.78 10.05 -39.29 -0.39 -6.18 16 13 C -0.08 -1.95 9.66 -39.66 -0.38 -2.33 16 14 C -0.18 -4.44 4.43 -103.91 -0.46 -4.90 16 15 C -0.07 -1.44 5.18 -29.04 -0.15 -1.59 16 16 C 0.51 10.42 7.47 -10.99 -0.08 10.34 16 17 O -0.52 -13.04 16.03 5.55 0.09 -12.95 16 18 N -0.74 -11.44 5.49 -60.30 -0.33 -11.77 16 19 C 0.10 1.41 4.84 -4.04 -0.02 1.39 16 20 C 0.09 0.94 3.27 -26.32 -0.09 0.85 16 21 H 0.11 0.97 8.14 -51.92 -0.42 0.55 16 22 C 0.04 0.34 5.47 -4.18 -0.02 0.32 16 23 N -0.54 -5.49 4.14 -225.05 -0.93 -6.42 16 24 C 0.05 0.45 6.89 -3.24 -0.02 0.43 16 25 C -0.13 -0.96 6.99 -24.44 -0.17 -1.13 16 26 C -0.11 -0.96 6.63 -25.03 -0.17 -1.13 16 27 C 0.03 0.29 2.78 -66.55 -0.19 0.10 16 28 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 29 C 0.07 0.81 6.31 36.81 0.23 1.04 16 30 O -0.38 -4.50 10.39 -35.23 -0.37 -4.87 16 31 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 32 H 0.12 3.25 6.21 -52.49 -0.33 2.93 16 33 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 34 H 0.08 1.80 8.06 -52.49 -0.42 1.37 16 35 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.10 1.92 7.05 -51.93 -0.37 1.55 16 37 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 38 H 0.40 5.08 8.45 -40.82 -0.35 4.74 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.30 6.37 -51.93 -0.33 0.96 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.04 0.38 8.10 -51.93 -0.42 -0.04 16 43 H 0.04 0.29 8.07 -51.93 -0.42 -0.13 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 49 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.07 0.94 6.78 -51.93 -0.35 0.59 16 LS Contribution 395.08 15.07 5.95 5.95 Total: -1.00 -32.18 395.08 -11.60 -43.78 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -7.96 Total: 10.78 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -3.64 Total: -18.36 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: -0.65 Total: -38.51 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.28 Total: -17.82 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.18 -11.60 -43.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777376082.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.617 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds