Wall clock time and date at job start Wed Apr 1 2020 03:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86797 * 120.00144 * 2 1 4 4 H 1.48499 * 109.47168 * 274.64922 * 3 2 1 5 5 H 1.48499 * 109.47153 * 34.65188 * 3 2 1 6 6 H 1.48497 * 109.47164 * 154.65033 * 3 2 1 7 7 C 1.39941 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00010 * 162.83661 * 7 2 1 9 9 C 1.41393 * 120.00026 * 342.83717 * 7 2 1 10 10 C 1.40731 * 120.24749 * 334.60255 * 9 7 2 11 11 C 1.37591 * 119.74712 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.25212 * 0.02562 * 11 10 9 13 13 C 1.38620 * 120.49728 * 359.67749 * 12 11 10 14 14 C 1.37636 * 120.24687 * 0.60374 * 13 12 11 15 15 C 1.50699 * 120.12958 * 179.70183 * 14 13 12 16 16 C 1.50694 * 109.47075 * 264.72666 * 15 14 13 17 17 O 1.21287 * 119.99796 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00454 * 179.97438 * 16 15 14 19 19 C 1.46491 * 120.00199 * 179.97438 * 18 16 15 20 20 C 1.53006 * 109.47117 * 180.02562 * 19 18 16 21 21 H 1.09008 * 109.16957 * 304.99577 * 20 19 18 22 22 C 1.53780 * 109.14440 * 185.73098 * 20 19 18 23 23 N 1.45483 * 107.44511 * 293.65153 * 22 20 19 24 24 C 1.46112 * 118.10858 * 177.24277 * 23 22 20 25 25 C 1.54913 * 105.80506 * 152.40586 * 24 23 22 26 26 C 1.55422 * 104.96552 * 355.94521 * 25 24 23 27 27 C 1.48869 * 109.14999 * 297.46234 * 23 22 20 28 28 H 1.08996 * 111.74866 * 306.13630 * 27 23 22 29 29 C 1.52321 * 106.88884 * 67.69581 * 27 23 22 30 30 O 1.42647 * 109.18284 * 64.29001 * 20 19 18 31 31 H 0.97007 * 119.99870 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.12318 * 359.95498 * 10 9 7 33 33 H 1.08003 * 119.87591 * 179.97438 * 11 10 9 34 34 H 1.08000 * 119.75355 * 179.97438 * 12 11 10 35 35 H 1.07993 * 119.87341 * 180.30562 * 13 12 11 36 36 H 1.08997 * 109.47676 * 144.72036 * 15 14 13 37 37 H 1.09005 * 109.46751 * 24.71987 * 15 14 13 38 38 H 0.96996 * 119.99196 * 0.02562 * 18 16 15 39 39 H 1.08997 * 109.47350 * 59.99755 * 19 18 16 40 40 H 1.09005 * 109.47066 * 299.99714 * 19 18 16 41 41 H 1.09006 * 109.86046 * 53.13417 * 22 20 19 42 42 H 1.09000 * 109.86279 * 174.16544 * 22 20 19 43 43 H 1.08998 * 110.18267 * 33.32218 * 24 23 22 44 44 H 1.09003 * 110.24687 * 271.52384 * 24 23 22 45 45 H 1.09002 * 110.33860 * 237.07431 * 25 24 23 46 46 H 1.09005 * 110.43078 * 114.87021 * 25 24 23 47 47 H 1.08995 * 110.93637 * 219.52563 * 26 25 24 48 48 H 1.09003 * 110.96025 * 95.87205 * 26 25 24 49 49 H 1.09007 * 109.91723 * 179.31198 * 29 27 23 50 50 H 1.09003 * 109.91562 * 58.15283 * 29 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3915 2.1031 -1.3955 5 1 1.4924 2.6223 0.7961 6 1 3.5855 1.4137 0.5994 7 6 2.0079 -1.2120 -0.0005 8 1 3.0518 -1.2327 -0.2766 9 6 1.3480 -2.4093 0.3603 10 6 0.2206 -2.3716 1.2017 11 6 -0.4139 -3.5430 1.5458 12 6 0.0538 -4.7575 1.0673 13 6 1.1598 -4.8060 0.2330 14 6 1.8136 -3.6474 -0.1197 15 6 3.0197 -3.7039 -1.0215 16 6 4.2725 -3.7223 -0.1842 17 8 4.1937 -3.6921 1.0257 18 7 5.4805 -3.7725 -0.7798 19 6 6.6983 -3.7899 0.0342 20 6 7.9229 -3.8473 -0.8814 21 1 7.8307 -4.7041 -1.5491 22 6 9.1878 -4.0102 -0.0221 23 7 9.3474 -2.7906 0.7548 24 6 10.4543 -2.7202 1.7059 25 6 10.8107 -1.2175 1.8280 26 6 9.8905 -0.5020 0.7999 27 6 9.5508 -1.6440 -0.1726 28 1 10.3730 -1.8253 -0.8648 29 6 8.2407 -1.4444 -0.9236 30 8 7.9841 -2.6523 -1.6579 31 1 -0.4850 0.8401 0.0004 32 1 -0.1449 -1.4269 1.5761 33 1 -1.2791 -3.5165 2.1917 34 1 -0.4501 -5.6721 1.3429 35 1 1.5125 -5.7570 -0.1378 36 1 3.0294 -2.8284 -1.6707 37 1 2.9762 -4.6071 -1.6301 38 1 5.5434 -3.7963 -1.7474 39 1 6.6886 -4.6649 0.6840 40 1 6.7419 -2.8862 0.6422 41 1 9.0737 -4.8632 0.6469 42 1 10.0559 -4.1562 -0.6649 43 1 11.3101 -3.2802 1.3291 44 1 10.1451 -3.1132 2.6744 45 1 11.8586 -1.0550 1.5760 46 1 10.6040 -0.8581 2.8361 47 1 10.4258 0.2983 0.2890 48 1 8.9904 -0.1201 1.2818 49 1 8.3315 -0.6038 -1.6117 50 1 7.4317 -1.2607 -0.2165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777376082.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:19 Heat of formation + Delta-G solvation = -76.252532 kcal Electronic energy + Delta-G solvation = -30693.456863 eV Core-core repulsion = 26684.040915 eV Total energy + Delta-G solvation = -4009.415948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.53243 -40.57970 -39.10760 -38.06931 -35.52605 -35.47954 -33.91694 -33.35293 -31.35522 -31.26752 -30.40475 -28.59721 -27.09759 -26.28825 -25.40433 -23.12669 -22.81167 -22.09416 -21.86650 -21.04935 -20.54930 -19.06252 -18.00996 -17.66946 -17.46414 -17.15827 -16.78633 -16.55409 -16.33893 -16.14517 -16.05494 -15.41865 -15.24339 -15.10039 -14.87263 -14.54275 -14.37511 -14.27748 -13.94989 -13.55417 -13.48956 -13.38845 -13.35917 -12.89407 -12.74192 -12.63825 -12.57936 -12.48793 -12.31492 -12.12867 -12.12391 -12.08631 -11.57027 -11.37911 -11.30808 -11.20752 -11.00647 -10.84050 -10.61609 -9.97856 -9.31659 -9.21991 -9.14468 -8.59541 -6.27738 1.00539 1.14582 1.34660 1.46612 1.53610 1.87992 2.20242 2.34579 2.69183 2.79426 2.93801 3.54443 3.69363 3.71234 3.79856 3.84152 4.08717 4.15889 4.18316 4.19138 4.25194 4.41899 4.44601 4.48340 4.53962 4.56695 4.62350 4.63472 4.68285 4.73039 4.81415 4.84150 4.86153 4.95462 4.97531 5.05810 5.11310 5.17620 5.21064 5.26052 5.37934 5.55984 5.58000 5.78842 5.84851 6.05279 6.14940 6.18280 6.20049 6.22647 6.43564 6.70352 6.77628 7.00577 7.12703 7.49829 8.37228 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011419 B = 0.003232 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.447088 B = 8660.848518 C =10138.559704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.037 3.963 3 Si 0.969 3.031 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.482 4.482 8 H 0.068 0.932 9 C 0.096 3.904 10 C -0.196 4.196 11 C -0.117 4.117 12 C -0.244 4.244 13 C -0.092 4.092 14 C -0.187 4.187 15 C -0.069 4.069 16 C 0.516 3.484 17 O -0.578 6.578 18 N -0.720 5.720 19 C 0.105 3.895 20 C 0.095 3.905 21 H 0.135 0.865 22 C 0.039 3.961 23 N -0.560 5.560 24 C 0.052 3.948 25 C -0.123 4.123 26 C -0.115 4.115 27 C 0.035 3.965 28 H 0.072 0.928 29 C 0.070 3.930 30 O -0.386 6.386 31 H 0.286 0.714 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.413 0.587 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.061 0.939 49 H 0.112 0.888 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.697 -3.269 -4.387 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.512 4.512 8 H 0.086 0.914 9 C 0.093 3.907 10 C -0.215 4.215 11 C -0.136 4.136 12 C -0.263 4.263 13 C -0.110 4.110 14 C -0.189 4.189 15 C -0.109 4.109 16 C 0.304 3.696 17 O -0.456 6.456 18 N -0.373 5.373 19 C -0.020 4.020 20 C 0.037 3.963 21 H 0.152 0.848 22 C -0.089 4.089 23 N -0.287 5.287 24 C -0.076 4.076 25 C -0.161 4.161 26 C -0.153 4.153 27 C -0.073 4.073 28 H 0.090 0.910 29 C -0.006 4.006 30 O -0.305 6.305 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.131 0.869 38 H 0.249 0.751 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.092 0.908 47 H 0.110 0.890 48 H 0.080 0.920 49 H 0.130 0.870 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 21.981 -3.104 -3.446 22.465 hybrid contribution 0.511 0.685 -0.061 0.857 sum 22.492 -2.419 -3.508 22.892 Atomic orbital electron populations 1.69887 1.08787 1.30201 1.36281 1.26647 0.95401 1.04121 0.91532 0.85400 0.79016 0.76892 0.79715 1.17835 1.19122 1.19277 1.19595 0.97317 0.92142 1.42124 0.91362 1.17736 0.91323 0.92811 0.88794 1.21291 1.00685 0.96855 1.02674 1.20943 0.99191 0.93375 1.00057 1.20721 1.01788 0.96701 1.07059 1.20746 0.95749 0.96679 0.97829 1.19548 1.00368 0.93447 1.05545 1.20271 0.89136 1.04494 0.96956 1.21130 0.85617 0.74385 0.88498 1.90659 1.87730 1.50320 1.16939 1.45836 1.04683 1.75912 1.10918 1.21753 0.84184 1.01738 0.94293 1.22606 0.91903 0.88742 0.93058 0.84763 1.22543 0.96902 0.93303 0.96182 1.62694 1.45327 1.04258 1.16410 1.22515 0.91319 0.97544 0.96188 1.22653 0.99987 0.93397 1.00058 1.22327 0.99992 0.96706 0.96278 1.23212 0.97277 0.92448 0.94341 0.91035 1.22669 0.94972 0.87354 0.95626 1.87897 1.92331 1.15059 1.35170 0.90347 0.88573 0.87662 0.86631 0.86473 0.88751 0.86873 0.75070 0.91864 0.93251 0.88601 0.92199 0.93190 0.90770 0.89699 0.90759 0.89030 0.91984 0.87031 0.94180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.78 10.98 21.83 0.24 -44.54 16 2 C 0.04 1.97 5.15 85.26 0.44 2.41 16 3 Si 0.97 40.20 29.59 68.60 2.03 42.23 16 4 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.48 -26.95 8.15 23.46 0.19 -26.76 16 8 H 0.07 3.75 6.66 -2.91 -0.02 3.73 16 9 C 0.10 5.42 5.57 -21.29 -0.12 5.30 16 10 C -0.20 -11.16 8.69 22.73 0.20 -10.96 16 11 C -0.12 -5.96 10.02 22.22 0.22 -5.74 16 12 C -0.24 -11.42 10.05 22.46 0.23 -11.20 16 13 C -0.09 -4.27 9.66 22.22 0.21 -4.06 16 14 C -0.19 -9.33 4.43 -19.40 -0.09 -9.42 16 15 C -0.07 -2.75 5.18 29.10 0.15 -2.60 16 16 C 0.52 20.90 7.47 87.65 0.65 21.55 16 17 O -0.58 -29.55 16.03 -3.05 -0.05 -29.60 16 18 N -0.72 -21.60 5.49 -463.06 -2.54 -24.14 16 19 C 0.10 2.89 4.84 86.38 0.42 3.31 16 20 C 0.10 1.85 3.27 30.86 0.10 1.96 16 21 H 0.13 1.96 8.14 -2.38 -0.02 1.94 16 22 C 0.04 0.66 5.47 86.83 0.48 1.14 16 23 N -0.56 -10.83 4.14 -865.92 -3.58 -14.42 16 24 C 0.05 0.80 6.89 87.11 0.60 1.40 16 25 C -0.12 -1.66 6.99 32.08 0.22 -1.43 16 26 C -0.11 -1.81 6.63 31.70 0.21 -1.60 16 27 C 0.04 0.63 2.78 44.58 0.12 0.75 16 28 H 0.07 1.16 8.11 -2.39 -0.02 1.14 16 29 C 0.07 1.52 6.31 71.76 0.45 1.97 16 30 O -0.39 -8.57 10.39 -148.98 -1.55 -10.12 16 31 H 0.29 14.05 8.30 -92.70 -0.77 13.28 16 32 H 0.10 5.72 6.21 -2.91 -0.02 5.70 16 33 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 34 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 35 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 36 H 0.09 3.78 7.05 -2.39 -0.02 3.76 16 37 H 0.11 3.56 8.05 -2.38 -0.02 3.54 16 38 H 0.41 9.79 8.45 -92.71 -0.78 9.00 16 39 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.05 1.69 6.37 -2.38 -0.02 1.68 16 41 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16 43 H 0.05 0.65 8.07 -2.39 -0.02 0.63 16 44 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.06 1.21 8.12 -2.39 -0.02 1.19 16 49 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 50 H 0.04 1.11 6.78 -2.39 -0.02 1.09 16 Total: -1.00 -72.83 395.08 -0.59 -73.42 By element: Atomic # 1 Polarization: 40.97 SS G_CDS: 0.16 Total: 41.13 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 4.70 Total: -33.97 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -5.88 Total: -83.10 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -1.60 Total: -39.72 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -72.83 -0.59 -73.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777376082.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.833 kcal (2) G-P(sol) polarization free energy of solvation -72.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds