Wall clock time and date at job start Wed Apr 1 2020 03:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86801 * 119.99653 * 2 1 4 4 H 1.48505 * 109.47174 * 90.00192 * 3 2 1 5 5 H 1.48495 * 109.47288 * 209.99712 * 3 2 1 6 6 H 1.48499 * 109.47122 * 330.00090 * 3 2 1 7 7 C 1.39937 * 120.00407 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00070 * 17.21351 * 7 2 1 9 9 C 1.41393 * 120.00285 * 197.21465 * 7 2 1 10 10 C 1.40731 * 120.24267 * 29.21108 * 9 7 2 11 11 C 1.37605 * 119.74574 * 179.72234 * 10 9 7 12 12 C 1.38655 * 120.24631 * 0.57601 * 11 10 9 13 13 C 1.38617 * 120.50105 * 359.67535 * 12 11 10 14 14 C 1.37634 * 120.25045 * 0.04423 * 13 12 11 15 15 C 1.50703 * 120.13024 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46823 * 264.97601 * 15 14 13 17 17 O 1.21285 * 120.00305 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99917 * 180.02562 * 16 15 14 19 19 C 1.46923 * 120.63021 * 359.71897 * 18 16 15 20 20 C 1.52758 * 109.00807 * 233.58946 * 19 18 16 21 21 C 1.53046 * 109.38347 * 305.58505 * 20 19 18 22 22 C 1.53043 * 109.53361 * 61.24150 * 21 20 19 23 23 H 1.08995 * 109.49577 * 58.59055 * 22 21 20 24 24 C 1.53005 * 109.49685 * 178.68466 * 22 21 20 25 25 C 1.53000 * 109.47256 * 184.83569 * 24 22 21 26 26 C 1.50700 * 109.47066 * 179.97438 * 25 24 22 27 27 N 1.34774 * 119.99864 * 179.97438 * 26 25 24 28 28 O 1.21288 * 119.99983 * 0.02562 * 26 25 24 29 29 C 1.46926 * 120.62767 * 180.02562 * 18 16 15 30 30 H 0.97003 * 119.99432 * 175.45779 * 1 2 3 31 31 H 1.07997 * 120.12828 * 359.97438 * 10 9 7 32 32 H 1.07992 * 119.87790 * 180.27320 * 11 10 9 33 33 H 1.08001 * 119.75344 * 179.69727 * 12 11 10 34 34 H 1.08002 * 119.87635 * 180.02562 * 13 12 11 35 35 H 1.08992 * 109.47284 * 24.97445 * 15 14 13 36 36 H 1.08996 * 109.47264 * 144.98116 * 15 14 13 37 37 H 1.09002 * 109.58481 * 353.41875 * 19 18 16 38 38 H 1.09001 * 109.58952 * 113.84503 * 19 18 16 39 39 H 1.09007 * 109.56856 * 185.55353 * 20 19 18 40 40 H 1.09004 * 109.39239 * 65.51223 * 20 19 18 41 41 H 1.09004 * 109.46090 * 301.22557 * 21 20 19 42 42 H 1.08994 * 109.45386 * 181.25634 * 21 20 19 43 43 H 1.09001 * 109.46935 * 304.84439 * 24 22 21 44 44 H 1.09009 * 109.46835 * 64.83504 * 24 22 21 45 45 H 1.08997 * 109.47152 * 300.00354 * 25 24 22 46 46 H 1.09004 * 109.46543 * 60.00143 * 25 24 22 47 47 H 0.96996 * 120.00186 * 0.02562 * 27 26 25 48 48 H 0.97005 * 119.99604 * 179.97438 * 27 26 25 49 49 H 1.09005 * 109.58223 * 246.14790 * 29 18 16 50 50 H 1.08998 * 109.59323 * 6.43399 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 1.4001 5 1 3.5397 1.4403 -0.6999 6 1 1.4395 2.6527 -0.7000 7 6 2.0080 -1.2118 0.0005 8 1 1.5043 -2.1264 -0.2759 9 6 3.3745 -1.2391 0.3629 10 6 3.8868 -0.2909 1.2680 11 6 5.2170 -0.3304 1.6180 12 6 6.0542 -1.2922 1.0733 13 6 5.5616 -2.2277 0.1769 14 6 4.2333 -2.2107 -0.1831 15 6 3.7005 -3.2295 -1.1574 16 6 3.7120 -2.6486 -2.5479 17 8 4.1130 -1.5185 -2.7298 18 7 3.2759 -3.3847 -3.5893 19 6 2.7919 -4.7569 -3.3856 20 6 3.5500 -5.6959 -4.3222 21 6 3.4214 -5.1909 -5.7612 22 6 4.0388 -3.7948 -5.8706 23 1 5.0860 -3.8357 -5.5711 24 6 3.9391 -3.3043 -7.3164 25 6 4.6624 -1.9627 -7.4509 26 6 4.5648 -1.4799 -8.8751 27 7 5.1327 -0.3105 -9.2306 28 8 3.9744 -2.1433 -9.7012 29 6 3.2816 -2.8323 -4.9508 30 1 -0.4849 -0.8375 -0.0665 31 1 3.2376 0.4622 1.6893 32 1 5.6114 0.3934 2.3157 33 1 7.0980 -1.3128 1.3499 34 1 6.2227 -2.9727 -0.2408 35 1 4.3276 -4.1205 -1.1307 36 1 2.6796 -3.4953 -0.8832 37 1 2.9654 -5.0558 -2.3518 38 1 1.7260 -4.8053 -3.6082 39 1 3.1311 -6.6997 -4.2502 40 1 4.6019 -5.7194 -4.0375 41 1 2.3678 -5.1446 -6.0370 42 1 3.9431 -5.8723 -6.4330 43 1 4.4014 -4.0346 -7.9805 44 1 2.8904 -3.1803 -7.5866 45 1 4.2001 -1.2325 -6.7868 46 1 5.7111 -2.0868 -7.1807 47 1 5.6046 0.2202 -8.5699 48 1 5.0702 0.0000 -10.1475 49 1 2.2564 -2.7204 -5.3039 50 1 3.7756 -1.8607 -4.9490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777379833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:03 Heat of formation + Delta-G solvation = -82.699098 kcal Electronic energy + Delta-G solvation = -30581.383955 eV Core-core repulsion = 26571.688462 eV Total energy + Delta-G solvation = -4009.695493 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.14246 -39.55207 -38.10355 -37.02554 -34.49555 -33.87817 -33.63580 -32.17562 -31.86634 -30.13779 -29.79625 -27.27280 -25.10908 -25.02863 -24.23780 -22.12455 -21.41078 -20.62633 -20.34613 -19.73278 -18.50973 -18.03580 -17.53387 -16.95525 -16.55073 -16.14781 -15.55320 -15.13321 -15.08615 -14.67356 -14.45680 -14.21031 -14.01221 -13.82243 -13.59935 -13.46992 -13.26175 -12.91625 -12.72660 -12.45407 -12.40222 -12.05544 -11.93055 -11.82477 -11.36865 -11.27559 -11.20094 -11.11617 -10.81381 -10.74941 -10.72346 -10.43237 -10.25874 -10.14825 -10.12003 -9.94506 -9.67883 -9.23820 -9.13252 -8.93273 -8.30704 -7.63562 -7.56098 -7.14961 -4.46849 2.42861 2.60830 2.77626 3.27285 3.29487 3.31265 3.37571 3.46894 3.68192 4.11883 4.47708 4.55262 4.62940 4.68144 4.80949 4.90091 5.00585 5.08375 5.22293 5.30065 5.39468 5.40505 5.50302 5.60205 5.66944 5.72060 5.74821 5.78779 5.81335 5.86928 5.93724 6.01753 6.04994 6.09481 6.15266 6.23353 6.23892 6.31231 6.50901 6.56213 6.76897 6.84832 7.06267 7.08912 7.38252 7.54246 7.69641 7.73588 7.83604 7.88369 8.02480 8.04289 8.43482 8.63237 8.82854 8.84826 10.10539 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.003190 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.794185 B = 8776.152122 C = 9511.452712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.047 3.953 3 Si 1.070 2.930 4 H -0.279 1.279 5 H -0.258 1.258 6 H -0.293 1.293 7 C -0.512 4.512 8 H 0.074 0.926 9 C 0.115 3.885 10 C -0.245 4.245 11 C -0.076 4.076 12 C -0.245 4.245 13 C -0.069 4.069 14 C -0.170 4.170 15 C -0.069 4.069 16 C 0.523 3.477 17 O -0.519 6.519 18 N -0.624 5.624 19 C 0.108 3.892 20 C -0.135 4.135 21 C -0.112 4.112 22 C -0.102 4.102 23 H 0.075 0.925 24 C -0.094 4.094 25 C -0.148 4.148 26 C 0.518 3.482 27 N -0.859 5.859 28 O -0.548 6.548 29 C 0.115 3.885 30 H 0.283 0.717 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.403 0.597 48 H 0.399 0.601 49 H 0.061 0.939 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.741 -7.477 -12.489 16.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.171 4.171 3 Si 0.897 3.103 4 H -0.207 1.207 5 H -0.182 1.182 6 H -0.221 1.221 7 C -0.541 4.541 8 H 0.092 0.908 9 C 0.112 3.888 10 C -0.264 4.264 11 C -0.095 4.095 12 C -0.265 4.265 13 C -0.087 4.087 14 C -0.172 4.172 15 C -0.109 4.109 16 C 0.313 3.687 17 O -0.392 6.392 18 N -0.360 5.360 19 C -0.015 4.015 20 C -0.173 4.173 21 C -0.150 4.150 22 C -0.122 4.122 23 H 0.093 0.907 24 C -0.133 4.133 25 C -0.188 4.188 26 C 0.303 3.697 27 N -0.423 5.423 28 O -0.425 6.425 29 C -0.008 4.008 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.118 0.882 46 H 0.114 0.886 47 H 0.232 0.768 48 H 0.229 0.771 49 H 0.079 0.921 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.221 -5.804 -12.906 15.887 hybrid contribution 0.250 -1.363 -0.106 1.390 sum 7.471 -7.167 -13.012 16.628 Atomic orbital electron populations 1.70571 1.08025 1.32696 1.33340 1.27142 0.95535 1.04385 0.90057 0.83642 0.76083 0.73059 0.77471 1.20670 1.18224 1.22101 1.20511 0.94888 0.96349 1.42366 0.90819 1.17504 0.92846 0.89902 0.88528 1.21125 0.95724 1.04816 1.04689 1.20599 0.93896 0.96940 0.98030 1.20319 0.98027 1.01446 1.06663 1.20412 0.94112 0.97374 0.96800 1.19043 0.93317 1.02360 1.02480 1.20283 1.02592 0.97501 0.90487 1.20992 0.75849 0.85639 0.86267 1.90656 1.45495 1.18238 1.84843 1.48157 1.66084 1.14686 1.07123 1.21578 0.98016 0.81514 1.00389 1.21856 1.01330 0.98776 0.95345 1.21537 1.01272 0.95737 0.96449 1.21568 1.00601 0.95485 0.94513 0.90690 1.21326 1.01480 0.94949 0.95525 1.21799 1.03739 0.99999 0.93283 1.20837 0.77218 0.80506 0.91119 1.43950 1.59143 1.23896 1.15278 1.90737 1.42422 1.56037 1.53301 1.21577 1.00082 0.97750 0.81372 0.90618 0.87815 0.88913 0.89050 0.89282 0.90631 0.89031 0.89563 0.91766 0.90826 0.91532 0.91666 0.91764 0.90962 0.90933 0.88155 0.88625 0.76839 0.77082 0.92104 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.54 13.65 55.55 0.76 -21.79 16 2 C 0.05 1.28 5.42 -17.34 -0.09 1.19 16 3 Si 1.07 25.98 24.90 -169.99 -4.23 21.74 16 4 H -0.28 -6.37 6.44 56.52 0.36 -6.01 16 5 H -0.26 -6.50 7.02 56.52 0.40 -6.10 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.51 -13.72 8.80 -37.75 -0.33 -14.05 16 8 H 0.07 1.98 6.61 -52.48 -0.35 1.64 16 9 C 0.12 2.96 5.13 -106.82 -0.55 2.41 16 10 C -0.24 -6.10 7.26 -38.87 -0.28 -6.38 16 11 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 12 C -0.25 -5.26 10.05 -39.29 -0.39 -5.66 16 13 C -0.07 -1.48 9.66 -39.66 -0.38 -1.86 16 14 C -0.17 -3.93 4.43 -103.91 -0.46 -4.39 16 15 C -0.07 -1.32 3.71 -29.03 -0.11 -1.43 16 16 C 0.52 10.28 7.69 -10.98 -0.08 10.20 16 17 O -0.52 -12.35 15.45 5.55 0.09 -12.27 16 18 N -0.62 -9.51 2.98 -173.05 -0.52 -10.02 16 19 C 0.11 1.27 6.31 -3.94 -0.02 1.24 16 20 C -0.13 -1.24 6.06 -26.83 -0.16 -1.41 16 21 C -0.11 -1.03 5.17 -26.68 -0.14 -1.16 16 22 C -0.10 -1.05 2.34 -90.51 -0.21 -1.26 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 24 C -0.09 -0.92 3.98 -26.73 -0.11 -1.03 16 25 C -0.15 -1.33 5.46 -27.88 -0.15 -1.48 16 26 C 0.52 5.33 8.10 -10.99 -0.09 5.24 16 27 N -0.86 -5.86 8.87 31.22 0.28 -5.58 16 28 O -0.55 -7.86 16.82 5.55 0.09 -7.77 16 29 C 0.12 1.54 5.32 -3.73 -0.02 1.52 16 30 H 0.28 7.48 8.73 -40.82 -0.36 7.13 16 31 H 0.10 2.57 4.42 -52.49 -0.23 2.34 16 32 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 35 H 0.08 1.19 7.59 -51.93 -0.39 0.80 16 36 H 0.09 1.76 6.33 -51.93 -0.33 1.43 16 37 H 0.09 0.97 5.93 -51.93 -0.31 0.66 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.07 0.78 8.10 -51.92 -0.42 0.36 16 45 H 0.10 0.90 6.70 -51.93 -0.35 0.55 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.40 1.76 8.83 -40.82 -0.36 1.40 16 48 H 0.40 2.35 8.93 -40.82 -0.36 1.99 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.09 1.36 5.72 -51.93 -0.30 1.06 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -34.02 393.45 -9.26 -43.28 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.67 Total: 6.89 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -3.99 Total: -20.42 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.52 Total: -37.39 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.18 Total: -20.04 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -4.23 Total: 21.74 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.02 -9.26 -43.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777379833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.416 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds