Wall clock time and date at job start Wed Apr 1 2020 03:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86801 * 119.99653 * 2 1 4 4 H 1.48505 * 109.47174 * 90.00192 * 3 2 1 5 5 H 1.48495 * 109.47288 * 209.99712 * 3 2 1 6 6 H 1.48499 * 109.47122 * 330.00090 * 3 2 1 7 7 C 1.39937 * 120.00407 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00070 * 17.21351 * 7 2 1 9 9 C 1.41393 * 120.00285 * 197.21465 * 7 2 1 10 10 C 1.40731 * 120.24267 * 29.21108 * 9 7 2 11 11 C 1.37605 * 119.74574 * 179.72234 * 10 9 7 12 12 C 1.38655 * 120.24631 * 0.57601 * 11 10 9 13 13 C 1.38617 * 120.50105 * 359.67535 * 12 11 10 14 14 C 1.37634 * 120.25045 * 0.04423 * 13 12 11 15 15 C 1.50703 * 120.13024 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46823 * 264.97601 * 15 14 13 17 17 O 1.21285 * 120.00305 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99917 * 180.02562 * 16 15 14 19 19 C 1.46923 * 120.63021 * 359.71897 * 18 16 15 20 20 C 1.52758 * 109.00807 * 233.58946 * 19 18 16 21 21 C 1.53046 * 109.38347 * 305.58505 * 20 19 18 22 22 C 1.53043 * 109.53361 * 61.24150 * 21 20 19 23 23 H 1.08995 * 109.49577 * 58.59055 * 22 21 20 24 24 C 1.53005 * 109.49685 * 178.68466 * 22 21 20 25 25 C 1.53000 * 109.47256 * 184.83569 * 24 22 21 26 26 C 1.50700 * 109.47066 * 179.97438 * 25 24 22 27 27 N 1.34774 * 119.99864 * 179.97438 * 26 25 24 28 28 O 1.21288 * 119.99983 * 0.02562 * 26 25 24 29 29 C 1.46926 * 120.62767 * 180.02562 * 18 16 15 30 30 H 0.97003 * 119.99432 * 175.45779 * 1 2 3 31 31 H 1.07997 * 120.12828 * 359.97438 * 10 9 7 32 32 H 1.07992 * 119.87790 * 180.27320 * 11 10 9 33 33 H 1.08001 * 119.75344 * 179.69727 * 12 11 10 34 34 H 1.08002 * 119.87635 * 180.02562 * 13 12 11 35 35 H 1.08992 * 109.47284 * 24.97445 * 15 14 13 36 36 H 1.08996 * 109.47264 * 144.98116 * 15 14 13 37 37 H 1.09002 * 109.58481 * 353.41875 * 19 18 16 38 38 H 1.09001 * 109.58952 * 113.84503 * 19 18 16 39 39 H 1.09007 * 109.56856 * 185.55353 * 20 19 18 40 40 H 1.09004 * 109.39239 * 65.51223 * 20 19 18 41 41 H 1.09004 * 109.46090 * 301.22557 * 21 20 19 42 42 H 1.08994 * 109.45386 * 181.25634 * 21 20 19 43 43 H 1.09001 * 109.46935 * 304.84439 * 24 22 21 44 44 H 1.09009 * 109.46835 * 64.83504 * 24 22 21 45 45 H 1.08997 * 109.47152 * 300.00354 * 25 24 22 46 46 H 1.09004 * 109.46543 * 60.00143 * 25 24 22 47 47 H 0.96996 * 120.00186 * 0.02562 * 27 26 25 48 48 H 0.97005 * 119.99604 * 179.97438 * 27 26 25 49 49 H 1.09005 * 109.58223 * 246.14790 * 29 18 16 50 50 H 1.08998 * 109.59323 * 6.43399 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 1.4001 5 1 3.5397 1.4403 -0.6999 6 1 1.4395 2.6527 -0.7000 7 6 2.0080 -1.2118 0.0005 8 1 1.5043 -2.1264 -0.2759 9 6 3.3745 -1.2391 0.3629 10 6 3.8868 -0.2909 1.2680 11 6 5.2170 -0.3304 1.6180 12 6 6.0542 -1.2922 1.0733 13 6 5.5616 -2.2277 0.1769 14 6 4.2333 -2.2107 -0.1831 15 6 3.7005 -3.2295 -1.1574 16 6 3.7120 -2.6486 -2.5479 17 8 4.1130 -1.5185 -2.7298 18 7 3.2759 -3.3847 -3.5893 19 6 2.7919 -4.7569 -3.3856 20 6 3.5500 -5.6959 -4.3222 21 6 3.4214 -5.1909 -5.7612 22 6 4.0388 -3.7948 -5.8706 23 1 5.0860 -3.8357 -5.5711 24 6 3.9391 -3.3043 -7.3164 25 6 4.6624 -1.9627 -7.4509 26 6 4.5648 -1.4799 -8.8751 27 7 5.1327 -0.3105 -9.2306 28 8 3.9744 -2.1433 -9.7012 29 6 3.2816 -2.8323 -4.9508 30 1 -0.4849 -0.8375 -0.0665 31 1 3.2376 0.4622 1.6893 32 1 5.6114 0.3934 2.3157 33 1 7.0980 -1.3128 1.3499 34 1 6.2227 -2.9727 -0.2408 35 1 4.3276 -4.1205 -1.1307 36 1 2.6796 -3.4953 -0.8832 37 1 2.9654 -5.0558 -2.3518 38 1 1.7260 -4.8053 -3.6082 39 1 3.1311 -6.6997 -4.2502 40 1 4.6019 -5.7194 -4.0375 41 1 2.3678 -5.1446 -6.0370 42 1 3.9431 -5.8723 -6.4330 43 1 4.4014 -4.0346 -7.9805 44 1 2.8904 -3.1803 -7.5866 45 1 4.2001 -1.2325 -6.7868 46 1 5.7111 -2.0868 -7.1807 47 1 5.6046 0.2202 -8.5699 48 1 5.0702 0.0000 -10.1475 49 1 2.2564 -2.7204 -5.3039 50 1 3.7756 -1.8607 -4.9490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777379833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:01 Heat of formation + Delta-G solvation = -105.598414 kcal Electronic energy + Delta-G solvation = -30582.376944 eV Core-core repulsion = 26571.688462 eV Total energy + Delta-G solvation = -4010.688481 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.33708 -40.52594 -39.64502 -38.41506 -35.58392 -35.53078 -34.63880 -33.51755 -33.13024 -31.99406 -30.75345 -28.78575 -26.66017 -25.94003 -25.71437 -23.22174 -22.98775 -21.95117 -21.20383 -20.98617 -20.08212 -19.71885 -18.27307 -18.06897 -17.56766 -17.35880 -16.95927 -16.64071 -16.31531 -16.05836 -15.69623 -15.47513 -15.41498 -15.24856 -14.80150 -14.49077 -14.45548 -14.14226 -14.03541 -13.84811 -13.78160 -13.70319 -13.24104 -13.03923 -12.84517 -12.72244 -12.59036 -12.20816 -12.12347 -11.93041 -11.91293 -11.69011 -11.58683 -11.57107 -11.30821 -11.11539 -11.00883 -10.84518 -10.67328 -10.66421 -9.55924 -9.53536 -9.32367 -9.13188 -6.47160 0.83084 0.92043 1.31967 1.52033 1.62424 1.73515 1.81462 2.14403 2.17279 2.63106 2.71598 3.48070 3.66678 3.78888 3.82810 3.96050 4.06334 4.09884 4.17371 4.25451 4.28899 4.34449 4.37998 4.47281 4.54247 4.55452 4.63273 4.66745 4.67854 4.82300 4.86907 4.90900 4.93355 4.97719 4.99729 5.12488 5.16013 5.26293 5.27016 5.29035 5.50137 5.52144 5.62320 5.69048 5.85009 5.88762 5.91333 6.04542 6.20700 6.43049 6.47309 6.52271 6.75915 6.90327 7.32769 7.37713 8.08259 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.003190 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.794185 B = 8776.152122 C = 9511.452712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.014 3.986 3 Si 1.098 2.902 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.287 1.287 7 C -0.533 4.533 8 H 0.056 0.944 9 C 0.085 3.915 10 C -0.265 4.265 11 C -0.088 4.088 12 C -0.230 4.230 13 C -0.079 4.079 14 C -0.174 4.174 15 C -0.068 4.068 16 C 0.519 3.481 17 O -0.572 6.572 18 N -0.617 5.617 19 C 0.098 3.902 20 C -0.126 4.126 21 C -0.112 4.112 22 C -0.088 4.088 23 H 0.076 0.924 24 C -0.088 4.088 25 C -0.146 4.146 26 C 0.515 3.485 27 N -0.842 5.842 28 O -0.594 6.594 29 C 0.111 3.889 30 H 0.276 0.724 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.098 0.902 46 H 0.114 0.886 47 H 0.417 0.583 48 H 0.406 0.594 49 H 0.059 0.941 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.636 -8.962 -12.650 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.199 4.199 3 Si 0.923 3.077 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.215 1.215 7 C -0.563 4.563 8 H 0.074 0.926 9 C 0.083 3.917 10 C -0.285 4.285 11 C -0.106 4.106 12 C -0.248 4.248 13 C -0.097 4.097 14 C -0.175 4.175 15 C -0.107 4.107 16 C 0.308 3.692 17 O -0.450 6.450 18 N -0.351 5.351 19 C -0.024 4.024 20 C -0.164 4.164 21 C -0.150 4.150 22 C -0.107 4.107 23 H 0.095 0.905 24 C -0.127 4.127 25 C -0.186 4.186 26 C 0.301 3.699 27 N -0.406 5.406 28 O -0.475 6.475 29 C -0.012 4.012 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.116 0.884 46 H 0.132 0.868 47 H 0.248 0.752 48 H 0.237 0.763 49 H 0.077 0.923 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.121 -7.301 -13.061 18.065 hybrid contribution -0.425 -1.007 -0.060 1.094 sum 9.696 -8.308 -13.122 18.309 Atomic orbital electron populations 1.70616 1.08361 1.32231 1.36759 1.27857 0.95792 1.06300 0.89920 0.83251 0.74489 0.71574 0.78403 1.18390 1.20149 1.21465 1.20453 0.95894 0.95756 1.44195 0.92552 1.17777 0.92908 0.91512 0.89498 1.21300 0.97124 1.04853 1.05173 1.20998 0.93031 0.98023 0.98584 1.20885 0.99670 0.99719 1.04570 1.20878 0.93918 0.98278 0.96658 1.19522 0.93985 1.01861 1.02168 1.20303 1.02838 0.97935 0.89622 1.21028 0.75746 0.85198 0.87187 1.90627 1.48415 1.20337 1.85665 1.48200 1.64320 1.15717 1.06882 1.21901 0.98747 0.80013 1.01756 1.21818 1.01110 0.99129 0.94314 1.21571 1.01439 0.95041 0.96943 1.21440 1.00090 0.95442 0.93723 0.90545 1.21243 1.00877 0.95481 0.95049 1.21798 1.04770 0.99537 0.92458 1.21046 0.76772 0.80914 0.91163 1.43828 1.57835 1.22835 1.16075 1.90717 1.44676 1.57596 1.54478 1.21706 1.00367 0.97983 0.81122 0.91322 0.88531 0.85806 0.85309 0.85738 0.86702 0.89746 0.88973 0.91302 0.88253 0.91336 0.91677 0.89916 0.90566 0.92190 0.88415 0.86752 0.75220 0.76337 0.92278 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.96 13.65 21.82 0.30 -48.66 16 2 C 0.01 0.79 5.42 85.25 0.46 1.25 16 3 Si 1.10 53.99 24.90 68.60 1.71 55.70 16 4 H -0.26 -11.59 6.44 99.48 0.64 -10.95 16 5 H -0.28 -14.21 7.02 99.48 0.70 -13.52 16 6 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.53 -29.72 8.80 23.46 0.21 -29.52 16 8 H 0.06 3.21 6.61 -2.91 -0.02 3.20 16 9 C 0.09 4.44 5.13 -21.29 -0.11 4.33 16 10 C -0.27 -13.14 7.26 22.73 0.17 -12.97 16 11 C -0.09 -3.74 10.02 22.22 0.22 -3.52 16 12 C -0.23 -8.96 10.05 22.46 0.23 -8.74 16 13 C -0.08 -3.17 9.66 22.22 0.21 -2.95 16 14 C -0.17 -7.84 4.43 -19.40 -0.09 -7.92 16 15 C -0.07 -2.53 3.71 29.10 0.11 -2.42 16 16 C 0.52 20.32 7.69 87.66 0.67 21.00 16 17 O -0.57 -27.75 15.45 -3.04 -0.05 -27.79 16 18 N -0.62 -18.41 2.98 -819.80 -2.44 -20.86 16 19 C 0.10 2.11 6.31 86.22 0.54 2.65 16 20 C -0.13 -1.92 6.06 30.53 0.19 -1.73 16 21 C -0.11 -1.76 5.17 30.62 0.16 -1.60 16 22 C -0.09 -1.67 2.34 -10.73 -0.03 -1.69 16 23 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 24 C -0.09 -1.63 3.98 30.60 0.12 -1.51 16 25 C -0.15 -2.49 5.46 29.85 0.16 -2.33 16 26 C 0.51 10.27 8.10 87.66 0.71 10.98 16 27 N -0.84 -10.53 8.87 -173.53 -1.54 -12.07 16 28 O -0.59 -17.02 16.82 -3.05 -0.05 -17.07 16 29 C 0.11 2.95 5.32 86.35 0.46 3.41 16 30 H 0.28 15.51 8.73 -92.71 -0.81 14.70 16 31 H 0.10 4.82 4.42 -2.91 -0.01 4.80 16 32 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 33 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 34 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 35 H 0.12 3.28 7.59 -2.39 -0.02 3.27 16 36 H 0.08 3.28 6.33 -2.39 -0.02 3.26 16 37 H 0.09 1.88 5.93 -2.39 -0.01 1.86 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.08 1.39 8.10 -2.39 -0.02 1.37 16 44 H 0.06 1.27 8.10 -2.38 -0.02 1.25 16 45 H 0.10 1.74 6.70 -2.39 -0.02 1.73 16 46 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 47 H 0.42 3.01 8.83 -92.71 -0.82 2.19 16 48 H 0.41 4.34 8.93 -92.70 -0.83 3.51 16 49 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 50 H 0.07 2.22 5.72 -2.39 -0.01 2.20 16 Total: -1.00 -77.00 393.45 1.54 -75.46 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: -0.78 Total: 28.56 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 4.40 Total: -33.27 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -3.68 Total: -81.58 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -0.10 Total: -44.87 kcal Atomic # 14 Polarization: 53.99 SS G_CDS: 1.71 Total: 55.70 kcal Total: -77.00 1.54 -75.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777379833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.143 kcal (2) G-P(sol) polarization free energy of solvation -76.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds