Wall clock time and date at job start Wed Apr 1 2020 03:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86800 * 120.00217 * 2 1 4 4 H 1.48500 * 109.47114 * 270.00352 * 3 2 1 5 5 H 1.48501 * 109.46960 * 30.00117 * 3 2 1 6 6 H 1.48498 * 109.47256 * 149.99952 * 3 2 1 7 7 C 1.39944 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00082 * 163.67074 * 7 2 1 9 9 C 1.41391 * 120.00260 * 343.66632 * 7 2 1 10 10 C 1.40739 * 120.24078 * 334.04266 * 9 7 2 11 11 C 1.37601 * 119.74198 * 179.71859 * 10 9 7 12 12 C 1.38655 * 120.24879 * 0.25991 * 11 10 9 13 13 C 1.38617 * 120.50454 * 359.97438 * 12 11 10 14 14 C 1.37637 * 120.24621 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.12821 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47000 * 264.99945 * 15 14 13 17 17 O 1.21280 * 119.99794 * 359.97438 * 16 15 14 18 18 N 1.34769 * 119.99712 * 180.02562 * 16 15 14 19 19 C 1.46919 * 120.63253 * 359.71744 * 18 16 15 20 20 C 1.53624 * 108.54413 * 126.37169 * 19 18 16 21 21 C 1.53043 * 109.24507 * 54.85461 * 20 19 18 22 22 C 1.52999 * 109.46257 * 178.49026 * 21 20 19 23 23 C 1.52995 * 109.47387 * 295.07120 * 22 21 20 24 24 C 1.50696 * 109.47112 * 180.02562 * 23 22 21 25 25 N 1.34773 * 120.00065 * 179.97438 * 24 23 22 26 26 O 1.21286 * 120.00039 * 359.97438 * 24 23 22 27 27 C 1.53043 * 109.53647 * 298.51678 * 21 20 19 28 28 C 1.46928 * 120.62734 * 179.97438 * 18 16 15 29 29 H 0.97001 * 119.99886 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.12895 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.87230 * 180.22900 * 11 10 9 32 32 H 1.08007 * 119.74839 * 179.97438 * 12 11 10 33 33 H 1.07996 * 119.87214 * 180.02562 * 13 12 11 34 34 H 1.09001 * 109.46824 * 24.99963 * 15 14 13 35 35 H 1.08998 * 109.46955 * 144.99869 * 15 14 13 36 36 H 1.09004 * 109.58944 * 246.20082 * 19 18 16 37 37 H 1.08995 * 109.59163 * 6.63041 * 19 18 16 38 38 H 1.09000 * 109.63359 * 294.86622 * 20 19 18 39 39 H 1.09000 * 109.46205 * 174.74254 * 20 19 18 40 40 H 1.09002 * 109.44853 * 58.52274 * 21 20 19 41 41 H 1.09008 * 109.46691 * 55.07175 * 22 21 20 42 42 H 1.09002 * 109.46959 * 175.06608 * 22 21 20 43 43 H 1.08998 * 109.47046 * 299.99687 * 23 22 21 44 44 H 1.08994 * 109.47271 * 59.99613 * 23 22 21 45 45 H 0.97000 * 120.00255 * 0.02562 * 25 24 23 46 46 H 0.97000 * 120.00238 * 180.02562 * 25 24 23 47 47 H 1.08996 * 109.49689 * 301.41052 * 27 21 20 48 48 H 1.09001 * 109.52201 * 181.32931 * 27 21 20 49 49 H 1.08996 * 109.58991 * 353.37252 * 28 18 16 50 50 H 1.09002 * 109.58756 * 113.65418 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0552 -1.2308 -0.2635 9 6 1.3437 -2.4119 0.3433 10 6 0.2128 -2.3813 1.1804 11 6 -0.4292 -3.5547 1.5037 12 6 0.0375 -4.7644 1.0125 13 6 1.1533 -4.8070 0.1912 14 6 1.8112 -3.6458 -0.1453 15 6 3.0237 -3.6951 -1.0388 16 6 4.2702 -3.7302 -0.1926 17 8 4.1826 -3.7161 1.0170 18 7 5.4823 -3.7763 -0.7800 19 6 5.6044 -3.7991 -2.2439 20 6 6.5425 -2.6610 -2.6737 21 6 7.8733 -2.7963 -1.9302 22 6 8.8251 -1.6870 -2.3826 23 6 9.1648 -1.8783 -3.8620 24 6 10.1027 -0.7861 -4.3073 25 7 10.5406 -0.7519 -5.5815 26 8 10.4635 0.0621 -3.5191 27 6 7.6322 -2.6784 -0.4235 28 6 6.7066 -3.8104 0.0317 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1528 -1.4401 1.5634 31 1 -1.2995 -3.5332 2.1429 32 1 -0.4724 -5.6806 1.2718 33 1 1.5078 -5.7549 -0.1860 34 1 2.9810 -4.5897 -1.6602 35 1 3.0418 -2.8108 -1.6758 36 1 6.0177 -4.7564 -2.5614 37 1 4.6226 -3.6550 -2.6948 38 1 6.0873 -1.7003 -2.4327 39 1 6.7181 -2.7211 -3.7478 40 1 8.3159 -3.7674 -2.1521 41 1 8.3463 -0.7179 -2.2420 42 1 9.7397 -1.7296 -1.7912 43 1 9.6435 -2.8474 -4.0025 44 1 8.2502 -1.8359 -4.4533 45 1 10.2518 -1.4300 -6.2120 46 1 11.1446 -0.0490 -5.8681 47 1 7.1666 -1.7176 -0.2037 48 1 8.5830 -2.7512 0.1044 49 1 6.4522 -3.6740 1.0827 50 1 7.2068 -4.7697 -0.1016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777410853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:45 Heat of formation + Delta-G solvation = -80.536981 kcal Electronic energy + Delta-G solvation = -30236.866629 eV Core-core repulsion = 26227.264893 eV Total energy + Delta-G solvation = -4009.601736 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.09676 -39.59904 -37.91674 -36.94908 -34.39978 -33.98259 -33.57511 -32.12030 -30.91460 -30.54719 -29.40012 -27.15060 -25.86298 -24.89096 -23.30523 -22.67238 -20.91160 -20.81974 -20.35505 -19.72155 -18.47262 -17.63769 -17.10605 -17.02860 -16.47034 -15.92406 -15.59432 -15.29396 -14.88531 -14.54046 -14.41635 -14.32759 -13.94656 -13.81784 -13.52133 -13.30191 -13.09255 -12.80893 -12.64862 -12.49065 -12.26978 -11.95991 -11.65135 -11.53033 -11.35129 -11.23069 -11.10521 -11.01933 -10.93606 -10.83652 -10.65009 -10.51542 -10.38292 -10.34152 -10.21421 -10.04781 -9.43512 -9.31495 -9.11513 -9.04973 -8.27823 -7.26417 -7.23741 -6.69410 -4.29343 2.33831 2.82650 3.00562 3.10104 3.15985 3.19278 3.31187 3.36272 3.49401 3.97768 4.45799 4.51113 4.60025 4.70184 4.78268 4.92759 5.03333 5.13779 5.26335 5.30986 5.32888 5.48452 5.51219 5.64899 5.74988 5.79812 5.82458 5.83955 5.96201 6.00802 6.07456 6.10373 6.12703 6.23813 6.32647 6.38924 6.41270 6.46890 6.55577 6.82806 6.92092 6.95579 7.13322 7.34456 7.47208 7.68437 7.86262 7.93463 7.98484 8.12408 8.17964 8.36506 8.69691 8.89600 8.96765 9.06618 10.24829 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011524 B = 0.002979 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.039950 B = 9396.590048 C =10996.905072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.078 3.922 3 Si 0.900 3.100 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.073 0.927 9 C 0.129 3.871 10 C -0.160 4.160 11 C -0.107 4.107 12 C -0.240 4.240 13 C -0.081 4.081 14 C -0.181 4.181 15 C -0.068 4.068 16 C 0.518 3.482 17 O -0.521 6.521 18 N -0.626 5.626 19 C 0.110 3.890 20 C -0.135 4.135 21 C -0.085 4.085 22 C -0.100 4.100 23 C -0.143 4.143 24 C 0.514 3.486 25 N -0.861 5.861 26 O -0.543 6.543 27 C -0.129 4.129 28 C 0.113 3.887 29 H 0.279 0.721 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.401 0.599 46 H 0.399 0.601 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.090 0.910 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.948 -4.876 -12.766 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.091 0.909 9 C 0.127 3.873 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.100 4.100 14 C -0.183 4.183 15 C -0.108 4.108 16 C 0.307 3.693 17 O -0.395 6.395 18 N -0.363 5.363 19 C -0.013 4.013 20 C -0.173 4.173 21 C -0.104 4.104 22 C -0.138 4.138 23 C -0.183 4.183 24 C 0.299 3.701 25 N -0.425 5.425 26 O -0.419 6.419 27 C -0.167 4.167 28 C -0.010 4.010 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.229 0.771 46 H 0.229 0.771 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.108 0.892 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.785 -4.241 -11.434 20.748 hybrid contribution 0.522 0.761 -0.658 1.133 sum 17.308 -3.480 -12.092 21.398 Atomic orbital electron populations 1.69818 1.07457 1.29002 1.35873 1.25859 0.94663 1.01058 0.92350 0.86448 0.80908 0.81083 0.79147 1.19553 1.20075 1.18499 1.19450 0.97122 0.90945 1.40961 0.90854 1.17333 0.90773 0.91261 0.87963 1.21292 0.99031 0.96665 1.00912 1.20669 0.98617 0.93480 0.99787 1.20300 1.01518 0.96147 1.07984 1.20287 0.95894 0.95501 0.98274 1.19076 0.99171 0.94049 1.06025 1.20281 0.90666 1.02435 0.97421 1.21240 0.84131 0.74626 0.89263 1.90666 1.86218 1.47761 1.14837 1.48231 1.05873 1.75849 1.06299 1.21741 1.00909 0.97962 0.80725 1.22153 0.95478 0.99997 0.99662 1.21155 0.95122 0.98644 0.95432 1.21407 0.99795 0.99567 0.93042 1.21768 0.99376 0.97703 0.99487 1.20893 0.80905 0.86482 0.81793 1.43955 1.52381 1.33831 1.12289 1.90767 1.57998 1.40196 1.52943 1.21947 0.99597 1.00007 0.95190 1.21430 0.84966 0.97351 0.97234 0.91013 0.86569 0.89625 0.89707 0.89834 0.90806 0.88669 0.91966 0.89285 0.90910 0.90970 0.91072 0.90967 0.91176 0.88828 0.88413 0.77089 0.77059 0.91191 0.91064 0.89161 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.77 10.97 55.55 0.61 -20.16 16 2 C 0.08 1.98 5.16 -17.34 -0.09 1.89 16 3 Si 0.90 19.24 29.59 -169.99 -5.03 14.21 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 6 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.45 -12.12 8.14 -37.74 -0.31 -12.43 16 8 H 0.07 1.91 6.68 -52.49 -0.35 1.56 16 9 C 0.13 3.50 5.56 -106.82 -0.59 2.91 16 10 C -0.16 -4.34 8.69 -38.87 -0.34 -4.68 16 11 C -0.11 -2.66 10.02 -39.66 -0.40 -3.05 16 12 C -0.24 -5.69 10.05 -39.29 -0.39 -6.08 16 13 C -0.08 -1.91 9.66 -39.66 -0.38 -2.29 16 14 C -0.18 -4.43 4.43 -103.91 -0.46 -4.89 16 15 C -0.07 -1.35 3.53 -29.03 -0.10 -1.46 16 16 C 0.52 10.32 7.35 -10.99 -0.08 10.24 16 17 O -0.52 -12.76 15.45 5.56 0.09 -12.67 16 18 N -0.63 -9.44 2.97 -172.54 -0.51 -9.95 16 19 C 0.11 1.21 6.37 -3.49 -0.02 1.19 16 20 C -0.13 -1.27 5.16 -26.39 -0.14 -1.40 16 21 C -0.08 -0.76 2.15 -90.58 -0.19 -0.95 16 22 C -0.10 -0.90 3.97 -26.73 -0.11 -1.01 16 23 C -0.14 -0.92 5.45 -27.89 -0.15 -1.08 16 24 C 0.51 4.49 8.10 -10.99 -0.09 4.40 16 25 N -0.86 -4.17 8.87 31.22 0.28 -3.89 16 26 O -0.54 -7.46 16.82 5.55 0.09 -7.37 16 27 C -0.13 -1.45 5.36 -26.63 -0.14 -1.60 16 28 C 0.11 1.52 6.43 -3.73 -0.02 1.49 16 29 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 30 H 0.12 3.24 6.22 -52.49 -0.33 2.91 16 31 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 32 H 0.08 1.78 8.06 -52.48 -0.42 1.35 16 33 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.07 1.23 7.84 -51.93 -0.41 0.82 16 35 H 0.10 1.86 6.60 -51.93 -0.34 1.51 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.49 6.50 -51.93 -0.34 0.15 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.80 8.10 -51.92 -0.42 0.38 16 42 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 0.49 6.53 -51.93 -0.34 0.15 16 45 H 0.40 0.67 8.83 -40.82 -0.36 0.31 16 46 H 0.40 1.75 8.93 -40.82 -0.36 1.38 16 47 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 49 H 0.09 1.44 7.00 -51.93 -0.36 1.08 16 50 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 398.31 15.07 6.00 6.00 Total: -1.00 -34.97 398.31 -10.19 -45.16 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.70 Total: 7.47 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -4.01 Total: -18.80 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.37 Total: -34.00 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.18 Total: -20.04 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.97 -10.19 -45.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777410853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.378 kcal (2) G-P(sol) polarization free energy of solvation -34.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds