Wall clock time and date at job start Wed Apr 1 2020 03:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86800 * 120.00217 * 2 1 4 4 H 1.48500 * 109.47114 * 270.00352 * 3 2 1 5 5 H 1.48501 * 109.46960 * 30.00117 * 3 2 1 6 6 H 1.48498 * 109.47256 * 149.99952 * 3 2 1 7 7 C 1.39944 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00082 * 163.67074 * 7 2 1 9 9 C 1.41391 * 120.00260 * 343.66632 * 7 2 1 10 10 C 1.40739 * 120.24078 * 334.04266 * 9 7 2 11 11 C 1.37601 * 119.74198 * 179.71859 * 10 9 7 12 12 C 1.38655 * 120.24879 * 0.25991 * 11 10 9 13 13 C 1.38617 * 120.50454 * 359.97438 * 12 11 10 14 14 C 1.37637 * 120.24621 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.12821 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47000 * 264.99945 * 15 14 13 17 17 O 1.21280 * 119.99794 * 359.97438 * 16 15 14 18 18 N 1.34769 * 119.99712 * 180.02562 * 16 15 14 19 19 C 1.46919 * 120.63253 * 359.71744 * 18 16 15 20 20 C 1.53624 * 108.54413 * 126.37169 * 19 18 16 21 21 C 1.53043 * 109.24507 * 54.85461 * 20 19 18 22 22 C 1.52999 * 109.46257 * 178.49026 * 21 20 19 23 23 C 1.52995 * 109.47387 * 295.07120 * 22 21 20 24 24 C 1.50696 * 109.47112 * 180.02562 * 23 22 21 25 25 N 1.34773 * 120.00065 * 179.97438 * 24 23 22 26 26 O 1.21286 * 120.00039 * 359.97438 * 24 23 22 27 27 C 1.53043 * 109.53647 * 298.51678 * 21 20 19 28 28 C 1.46928 * 120.62734 * 179.97438 * 18 16 15 29 29 H 0.97001 * 119.99886 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.12895 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.87230 * 180.22900 * 11 10 9 32 32 H 1.08007 * 119.74839 * 179.97438 * 12 11 10 33 33 H 1.07996 * 119.87214 * 180.02562 * 13 12 11 34 34 H 1.09001 * 109.46824 * 24.99963 * 15 14 13 35 35 H 1.08998 * 109.46955 * 144.99869 * 15 14 13 36 36 H 1.09004 * 109.58944 * 246.20082 * 19 18 16 37 37 H 1.08995 * 109.59163 * 6.63041 * 19 18 16 38 38 H 1.09000 * 109.63359 * 294.86622 * 20 19 18 39 39 H 1.09000 * 109.46205 * 174.74254 * 20 19 18 40 40 H 1.09002 * 109.44853 * 58.52274 * 21 20 19 41 41 H 1.09008 * 109.46691 * 55.07175 * 22 21 20 42 42 H 1.09002 * 109.46959 * 175.06608 * 22 21 20 43 43 H 1.08998 * 109.47046 * 299.99687 * 23 22 21 44 44 H 1.08994 * 109.47271 * 59.99613 * 23 22 21 45 45 H 0.97000 * 120.00255 * 0.02562 * 25 24 23 46 46 H 0.97000 * 120.00238 * 180.02562 * 25 24 23 47 47 H 1.08996 * 109.49689 * 301.41052 * 27 21 20 48 48 H 1.09001 * 109.52201 * 181.32931 * 27 21 20 49 49 H 1.08996 * 109.58991 * 353.37252 * 28 18 16 50 50 H 1.09002 * 109.58756 * 113.65418 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0552 -1.2308 -0.2635 9 6 1.3437 -2.4119 0.3433 10 6 0.2128 -2.3813 1.1804 11 6 -0.4292 -3.5547 1.5037 12 6 0.0375 -4.7644 1.0125 13 6 1.1533 -4.8070 0.1912 14 6 1.8112 -3.6458 -0.1453 15 6 3.0237 -3.6951 -1.0388 16 6 4.2702 -3.7302 -0.1926 17 8 4.1826 -3.7161 1.0170 18 7 5.4823 -3.7763 -0.7800 19 6 5.6044 -3.7991 -2.2439 20 6 6.5425 -2.6610 -2.6737 21 6 7.8733 -2.7963 -1.9302 22 6 8.8251 -1.6870 -2.3826 23 6 9.1648 -1.8783 -3.8620 24 6 10.1027 -0.7861 -4.3073 25 7 10.5406 -0.7519 -5.5815 26 8 10.4635 0.0621 -3.5191 27 6 7.6322 -2.6784 -0.4235 28 6 6.7066 -3.8104 0.0317 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1528 -1.4401 1.5634 31 1 -1.2995 -3.5332 2.1429 32 1 -0.4724 -5.6806 1.2718 33 1 1.5078 -5.7549 -0.1860 34 1 2.9810 -4.5897 -1.6602 35 1 3.0418 -2.8108 -1.6758 36 1 6.0177 -4.7564 -2.5614 37 1 4.6226 -3.6550 -2.6948 38 1 6.0873 -1.7003 -2.4327 39 1 6.7181 -2.7211 -3.7478 40 1 8.3159 -3.7674 -2.1521 41 1 8.3463 -0.7179 -2.2420 42 1 9.7397 -1.7296 -1.7912 43 1 9.6435 -2.8474 -4.0025 44 1 8.2502 -1.8359 -4.4533 45 1 10.2518 -1.4300 -6.2120 46 1 11.1446 -0.0490 -5.8681 47 1 7.1666 -1.7176 -0.2037 48 1 8.5830 -2.7512 0.1044 49 1 6.4522 -3.6740 1.0827 50 1 7.2068 -4.7697 -0.1016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777410853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:43 Heat of formation + Delta-G solvation = -103.908110 kcal Electronic energy + Delta-G solvation = -30237.880077 eV Core-core repulsion = 26227.264893 eV Total energy + Delta-G solvation = -4010.615184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.22716 -40.47863 -39.43554 -38.41257 -35.50884 -35.45046 -34.58432 -33.62765 -32.12683 -31.39102 -31.32346 -28.69698 -27.16370 -26.51335 -24.22378 -23.67822 -22.81954 -22.01311 -21.17984 -20.95830 -19.77330 -19.03468 -18.19677 -17.97798 -17.48677 -17.32558 -16.79069 -16.54377 -16.27206 -16.16227 -15.45815 -15.30613 -15.22005 -15.10824 -14.79989 -14.45616 -14.39450 -14.27168 -13.93189 -13.59078 -13.52465 -13.37690 -13.09149 -12.88020 -12.79606 -12.72586 -12.63287 -12.48628 -12.16119 -12.12678 -12.04697 -11.71872 -11.35379 -11.31940 -11.24088 -11.12824 -11.03296 -10.95233 -10.61939 -10.59577 -9.48973 -9.22380 -9.14766 -8.60858 -6.29572 0.99046 1.13526 1.32468 1.43104 1.50786 1.72171 1.85193 2.17281 2.24082 2.71560 2.77508 3.66154 3.79151 3.83571 3.85065 4.02112 4.17026 4.21116 4.33653 4.36107 4.40036 4.41904 4.51673 4.60840 4.61672 4.65921 4.71806 4.78391 4.81033 4.89182 4.92130 4.94138 5.04900 5.07249 5.18004 5.19065 5.20793 5.24741 5.37003 5.39077 5.55255 5.60425 5.76335 5.78742 5.95071 6.04206 6.16901 6.21894 6.42317 6.54521 6.55988 6.74211 6.99173 7.11475 7.43122 7.43417 8.35726 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011524 B = 0.002979 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.039950 B = 9396.590048 C =10996.905072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.040 3.960 3 Si 0.965 3.035 4 H -0.253 1.253 5 H -0.266 1.266 6 H -0.273 1.273 7 C -0.481 4.481 8 H 0.066 0.934 9 C 0.095 3.905 10 C -0.195 4.195 11 C -0.117 4.117 12 C -0.242 4.242 13 C -0.091 4.091 14 C -0.188 4.188 15 C -0.064 4.064 16 C 0.514 3.486 17 O -0.582 6.582 18 N -0.617 5.617 19 C 0.100 3.900 20 C -0.132 4.132 21 C -0.074 4.074 22 C -0.096 4.096 23 C -0.136 4.136 24 C 0.506 3.494 25 N -0.841 5.841 26 O -0.605 6.605 27 C -0.126 4.126 28 C 0.111 3.889 29 H 0.286 0.714 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.039 0.961 42 H 0.059 0.941 43 H 0.128 0.872 44 H 0.119 0.881 45 H 0.419 0.581 46 H 0.402 0.598 47 H 0.035 0.965 48 H 0.086 0.914 49 H 0.054 0.946 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.717 -7.040 -15.892 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.174 4.174 3 Si 0.786 3.214 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.198 1.198 7 C -0.511 4.511 8 H 0.084 0.916 9 C 0.093 3.907 10 C -0.214 4.214 11 C -0.136 4.136 12 C -0.261 4.261 13 C -0.109 4.109 14 C -0.190 4.190 15 C -0.103 4.103 16 C 0.304 3.696 17 O -0.461 6.461 18 N -0.352 5.352 19 C -0.021 4.021 20 C -0.170 4.170 21 C -0.092 4.092 22 C -0.134 4.134 23 C -0.175 4.175 24 C 0.293 3.707 25 N -0.405 5.405 26 O -0.486 6.486 27 C -0.164 4.164 28 C -0.011 4.011 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.146 0.854 44 H 0.137 0.863 45 H 0.251 0.749 46 H 0.233 0.767 47 H 0.054 0.946 48 H 0.105 0.895 49 H 0.073 0.927 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.576 -6.440 -14.670 24.531 hybrid contribution 0.008 1.317 0.272 1.345 sum 18.584 -5.123 -14.398 24.061 Atomic orbital electron populations 1.69870 1.08639 1.30144 1.36473 1.26571 0.95370 1.03855 0.91646 0.85471 0.78868 0.77215 0.79821 1.17767 1.19007 1.19811 1.19549 0.96878 0.92012 1.42618 0.91573 1.17728 0.91398 0.92804 0.88760 1.21304 1.00595 0.96860 1.02686 1.20946 0.99169 0.93385 1.00069 1.20732 1.01512 0.96758 1.07095 1.20734 0.95628 0.96617 0.97942 1.19596 1.00285 0.93471 1.05620 1.20264 0.89087 1.04111 0.96848 1.21200 0.85610 0.74391 0.88407 1.90640 1.87250 1.51060 1.17154 1.48276 1.04824 1.73578 1.08476 1.22152 1.01850 1.00462 0.77685 1.22168 0.94918 0.97800 1.02090 1.21106 0.95036 1.00084 0.92997 1.21287 0.98923 0.97995 0.95233 1.21773 1.00013 0.98321 0.97390 1.21371 0.80823 0.86253 0.82249 1.43819 1.51219 1.34011 1.11437 1.90751 1.60439 1.42629 1.54817 1.21926 0.99364 0.97345 0.97808 1.21557 0.84652 0.99675 0.95262 0.90347 0.88614 0.87672 0.86572 0.86445 0.87000 0.88843 0.88147 0.89261 0.93956 0.86952 0.87794 0.94161 0.92248 0.85368 0.86260 0.74888 0.76707 0.94621 0.89513 0.92741 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.68 10.97 21.83 0.24 -44.44 16 2 C 0.04 2.11 5.16 85.26 0.44 2.55 16 3 Si 0.96 40.80 29.59 68.60 2.03 42.83 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.48 -26.81 8.14 23.46 0.19 -26.62 16 8 H 0.07 3.65 6.68 -2.91 -0.02 3.63 16 9 C 0.10 5.37 5.56 -21.29 -0.12 5.25 16 10 C -0.19 -11.07 8.69 22.73 0.20 -10.87 16 11 C -0.12 -5.91 10.02 22.22 0.22 -5.69 16 12 C -0.24 -11.21 10.05 22.46 0.23 -10.98 16 13 C -0.09 -4.17 9.66 22.22 0.21 -3.96 16 14 C -0.19 -9.25 4.43 -19.40 -0.09 -9.34 16 15 C -0.06 -2.48 3.53 29.10 0.10 -2.38 16 16 C 0.51 20.59 7.35 87.66 0.64 21.23 16 17 O -0.58 -29.64 15.45 -3.03 -0.05 -29.69 16 18 N -0.62 -17.84 2.97 -818.18 -2.43 -20.27 16 19 C 0.10 1.85 6.37 86.51 0.55 2.40 16 20 C -0.13 -2.06 5.16 30.82 0.16 -1.90 16 21 C -0.07 -1.10 2.15 -10.77 -0.02 -1.12 16 22 C -0.10 -1.57 3.97 30.59 0.12 -1.45 16 23 C -0.14 -1.24 5.45 29.85 0.16 -1.08 16 24 C 0.51 7.85 8.10 87.66 0.71 8.56 16 25 N -0.84 -5.86 8.87 -173.53 -1.54 -7.40 16 26 O -0.60 -16.66 16.82 -3.05 -0.05 -16.71 16 27 C -0.13 -2.76 5.36 30.66 0.16 -2.60 16 28 C 0.11 2.88 6.43 86.35 0.55 3.44 16 29 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 30 H 0.10 5.68 6.22 -2.91 -0.02 5.67 16 31 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 32 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 33 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 34 H 0.11 3.40 7.84 -2.39 -0.02 3.38 16 35 H 0.09 3.65 6.60 -2.39 -0.02 3.64 16 36 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.09 1.68 5.93 -2.39 -0.01 1.66 16 38 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.11 0.90 6.50 -2.39 -0.02 0.89 16 40 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.04 0.91 8.10 -2.38 -0.02 0.89 16 42 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 43 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.12 0.61 6.53 -2.39 -0.02 0.59 16 45 H 0.42 -0.23 8.83 -92.71 -0.82 -1.04 16 46 H 0.40 2.71 8.93 -92.71 -0.83 1.88 16 47 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.05 1.82 7.00 -2.39 -0.02 1.80 16 50 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -83.91 398.31 1.97 -81.94 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -0.67 Total: 28.29 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 4.43 Total: -34.55 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -3.73 Total: -72.11 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -0.10 Total: -46.40 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -83.91 1.97 -81.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777410853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.963 kcal (2) G-P(sol) polarization free energy of solvation -83.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds