Wall clock time and date at job start Wed Apr 1 2020 03:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86798 * 119.99902 * 2 1 4 4 H 1.48495 * 109.47312 * 270.00430 * 3 2 1 5 5 H 1.48509 * 109.47004 * 30.00516 * 3 2 1 6 6 H 1.48502 * 109.47095 * 150.00321 * 3 2 1 7 7 C 1.39949 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99464 * 165.60257 * 7 2 1 9 9 C 1.41391 * 119.99818 * 345.59879 * 7 2 1 10 10 C 1.40724 * 120.24797 * 333.24805 * 9 7 2 11 11 C 1.37607 * 119.74689 * 180.02562 * 10 9 7 12 12 C 1.38651 * 120.24692 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.50166 * 359.72549 * 12 11 10 14 14 C 1.37641 * 120.24871 * 0.55591 * 13 12 11 15 15 C 1.50698 * 120.13052 * 179.72397 * 14 13 12 16 16 C 1.50699 * 109.47073 * 264.72295 * 15 14 13 17 17 O 1.21274 * 119.99847 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99881 * 179.97438 * 16 15 14 19 19 C 1.47084 * 120.88044 * 179.97438 * 18 16 15 20 20 C 1.53234 * 108.52041 * 128.79551 * 19 18 16 21 21 N 1.46904 * 109.33940 * 53.83008 * 20 19 18 22 22 C 1.46903 * 110.99812 * 172.74798 * 21 20 19 23 23 H 1.09001 * 110.46037 * 57.96465 * 22 21 20 24 24 C 1.54511 * 110.51103 * 180.56923 * 22 21 20 25 25 C 1.54479 * 104.06076 * 118.64106 * 24 22 21 26 26 O 1.44426 * 104.80398 * 23.98152 * 25 24 22 27 27 C 1.44420 * 105.27639 * 319.48628 * 26 25 24 28 28 C 1.46901 * 111.26967 * 296.89274 * 21 20 19 29 29 C 1.47078 * 120.88272 * 359.97438 * 18 16 15 30 30 H 0.97003 * 120.00343 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.12834 * 359.97438 * 10 9 7 32 32 H 1.07998 * 119.87126 * 179.97438 * 11 10 9 33 33 H 1.07992 * 119.74698 * 180.02562 * 12 11 10 34 34 H 1.07997 * 119.87886 * 180.29726 * 13 12 11 35 35 H 1.09002 * 109.47200 * 144.71764 * 15 14 13 36 36 H 1.09002 * 109.46991 * 24.72273 * 15 14 13 37 37 H 1.09002 * 109.62381 * 9.08717 * 19 18 16 38 38 H 1.09003 * 109.62822 * 248.50742 * 19 18 16 39 39 H 1.08997 * 109.49774 * 173.79356 * 20 19 18 40 40 H 1.09006 * 109.49530 * 293.87059 * 20 19 18 41 41 H 1.08997 * 110.51434 * 237.28994 * 24 22 21 42 42 H 1.09002 * 110.50806 * 359.86664 * 24 22 21 43 43 H 1.08999 * 110.37049 * 142.81175 * 25 24 22 44 44 H 1.09000 * 110.37875 * 265.03616 * 25 24 22 45 45 H 1.09005 * 110.37010 * 281.68034 * 27 26 25 46 46 H 1.08995 * 110.37536 * 159.34105 * 27 26 25 47 47 H 1.08997 * 109.49269 * 303.14998 * 28 21 20 48 48 H 1.08997 * 109.51104 * 183.07635 * 28 21 20 49 49 H 1.08997 * 109.62923 * 350.91182 * 29 18 16 50 50 H 1.09000 * 109.62953 * 111.49547 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4896 2.0465 -1.4000 5 1 1.4396 2.6527 0.7002 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0625 -1.2265 -0.2331 9 6 1.3343 -2.4174 0.3035 10 6 0.1891 -2.4026 1.1212 11 6 -0.4583 -3.5818 1.4109 12 6 0.0142 -4.7815 0.9009 13 6 1.1382 -4.8073 0.0902 14 6 1.8050 -3.6407 -0.2080 15 6 3.0304 -3.6726 -1.0845 16 6 4.2644 -3.7263 -0.2211 17 8 4.1590 -3.7371 0.9870 18 7 5.4849 -3.7624 -0.7916 19 6 6.7021 -3.8145 0.0325 20 6 7.5754 -4.9725 -0.4618 21 7 7.8081 -4.8248 -1.9048 22 6 8.7797 -5.8162 -2.3855 23 1 8.4322 -6.8264 -2.1690 24 6 9.0266 -5.6417 -3.9008 25 6 10.5321 -5.3098 -4.0000 26 8 11.1120 -5.8635 -2.7987 27 6 10.1653 -5.5692 -1.7485 28 6 6.5504 -4.9117 -2.6589 29 6 5.6351 -3.7507 -2.2546 30 1 -0.4851 0.8400 0.0004 31 1 -0.1799 -1.4694 1.5205 32 1 -1.3371 -3.5729 2.0385 33 1 -0.5004 -5.7021 1.1330 34 1 1.4947 -5.7468 -0.3055 35 1 3.0583 -2.7754 -1.7029 36 1 2.9963 -4.5542 -1.7248 37 1 6.4313 -3.9793 1.0754 38 1 7.2493 -2.8765 -0.0628 39 1 8.5302 -4.9583 0.0639 40 1 7.0683 -5.9181 -0.2701 41 1 8.8034 -6.5662 -4.4331 42 1 8.4259 -4.8213 -4.2936 43 1 10.9667 -5.7793 -4.8824 44 1 10.6815 -4.2306 -4.0328 45 1 10.2585 -4.5296 -1.4341 46 1 10.3181 -6.2379 -0.9015 47 1 6.0576 -5.8581 -2.4365 48 1 6.7615 -4.8535 -3.7267 49 1 4.6590 -3.8735 -2.7239 50 1 6.0799 -2.8068 -2.5695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777415476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:57 Heat of formation + Delta-G solvation = -44.947379 kcal Electronic energy + Delta-G solvation = -30593.256143 eV Core-core repulsion = 26585.197688 eV Total energy + Delta-G solvation = -4008.058455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.42280 -39.41648 -37.84766 -36.99172 -34.47920 -33.59339 -32.24150 -31.28650 -30.86132 -29.45394 -29.24726 -27.12361 -25.99237 -24.97925 -24.09038 -22.55646 -21.79986 -20.90942 -20.64904 -19.81591 -18.55468 -17.24958 -17.11481 -16.77520 -16.18210 -15.78521 -15.64993 -15.32990 -15.08987 -14.98539 -14.69469 -14.41685 -14.22115 -13.74415 -13.58955 -13.25078 -13.18771 -12.81628 -12.58057 -12.54207 -12.26355 -12.06430 -11.71603 -11.58166 -11.54535 -11.44100 -11.21873 -11.15378 -11.07647 -11.01840 -11.00697 -10.92159 -10.66804 -10.37419 -10.13041 -9.47089 -9.34532 -9.15916 -9.12813 -8.80252 -8.29253 -7.29317 -7.25989 -6.69981 -4.32581 2.79706 2.95839 3.08247 3.13807 3.22440 3.28419 3.31750 3.49517 3.76590 3.96014 4.12905 4.45866 4.63395 4.65428 4.69859 4.83196 4.90571 4.94953 5.06898 5.14850 5.17099 5.32486 5.35321 5.38054 5.40931 5.46025 5.51334 5.56675 5.62040 5.72641 5.78605 5.86643 5.95984 6.04650 6.12393 6.28553 6.33401 6.42721 6.52261 6.68502 6.73985 6.77628 6.84171 7.11255 7.31650 7.44333 7.65092 7.79370 7.94684 8.09643 8.14826 8.33731 8.67034 8.81652 8.94291 9.03675 10.23894 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.002736 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.060478 B =10230.415533 C =11344.094801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.076 3.924 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.455 4.455 8 H 0.073 0.927 9 C 0.129 3.871 10 C -0.158 4.158 11 C -0.108 4.108 12 C -0.239 4.239 13 C -0.082 4.082 14 C -0.181 4.181 15 C -0.068 4.068 16 C 0.519 3.481 17 O -0.519 6.519 18 N -0.628 5.628 19 C 0.118 3.882 20 C 0.041 3.959 21 N -0.528 5.528 22 C 0.050 3.950 23 H 0.055 0.945 24 C -0.153 4.153 25 C 0.049 3.951 26 O -0.377 6.377 27 C 0.053 3.947 28 C 0.037 3.963 29 C 0.115 3.885 30 H 0.279 0.721 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.040 0.960 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.040 0.960 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.232 -7.606 -8.868 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.485 4.485 8 H 0.091 0.909 9 C 0.126 3.874 10 C -0.177 4.177 11 C -0.126 4.126 12 C -0.258 4.258 13 C -0.101 4.101 14 C -0.182 4.182 15 C -0.108 4.108 16 C 0.308 3.692 17 O -0.393 6.393 18 N -0.366 5.366 19 C -0.005 4.005 20 C -0.087 4.087 21 N -0.254 5.254 22 C -0.059 4.059 23 H 0.073 0.927 24 C -0.191 4.191 25 C -0.028 4.028 26 O -0.295 6.295 27 C -0.024 4.024 28 C -0.091 4.091 29 C -0.009 4.009 30 H 0.090 0.910 31 H 0.136 0.864 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.058 0.942 48 H 0.107 0.893 49 H 0.111 0.889 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.346 -7.091 -8.254 19.637 hybrid contribution -0.212 0.043 0.030 0.219 sum 16.134 -7.048 -8.225 19.432 Atomic orbital electron populations 1.69810 1.07430 1.28985 1.36151 1.25874 0.94719 1.01106 0.92393 0.86398 0.80768 0.80974 0.79125 1.19532 1.20109 1.18559 1.19453 0.96487 0.90735 1.41820 0.90878 1.17338 0.90898 0.91277 0.87862 1.21321 0.98760 0.96626 1.00982 1.20682 0.98603 0.93502 0.99838 1.20302 1.01245 0.96281 1.07978 1.20283 0.95905 0.95438 0.98445 1.19069 0.98773 0.94224 1.06183 1.20278 0.90694 1.02521 0.97279 1.21266 0.83836 0.74600 0.89450 1.90669 1.85921 1.47724 1.14993 1.48292 1.05852 1.76044 1.06363 1.21534 0.84932 0.97589 0.96475 1.22540 0.99999 0.98316 0.87872 1.62069 1.10603 1.48835 1.03885 1.23021 0.93531 0.94302 0.95055 0.92684 1.23090 0.97548 1.03113 0.95310 1.23368 0.92015 0.98766 0.88666 1.89128 1.43597 1.78962 1.17837 1.23464 0.86256 1.01689 0.90994 1.22607 0.89501 0.98270 0.98751 1.21760 0.99967 0.98263 0.80889 0.91012 0.86423 0.89581 0.89698 0.89903 0.88576 0.90839 0.88698 0.91284 0.89790 0.94200 0.90600 0.89068 0.89233 0.91882 0.90836 0.89277 0.94177 0.89293 0.88857 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.66 10.91 55.55 0.61 -20.05 16 2 C 0.08 1.92 5.20 -17.34 -0.09 1.82 16 3 Si 0.90 18.94 29.58 -169.99 -5.03 13.91 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.46 -12.01 8.13 -37.74 -0.31 -12.32 16 8 H 0.07 1.89 6.69 -52.49 -0.35 1.54 16 9 C 0.13 3.45 5.56 -106.83 -0.59 2.86 16 10 C -0.16 -4.24 8.68 -38.87 -0.34 -4.58 16 11 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 12 C -0.24 -5.60 10.05 -39.29 -0.39 -6.00 16 13 C -0.08 -1.91 9.66 -39.66 -0.38 -2.30 16 14 C -0.18 -4.36 4.43 -103.91 -0.46 -4.82 16 15 C -0.07 -1.33 3.55 -29.04 -0.10 -1.43 16 16 C 0.52 10.18 7.33 -10.99 -0.08 10.10 16 17 O -0.52 -12.49 15.49 5.56 0.09 -12.41 16 18 N -0.63 -9.46 3.01 -172.45 -0.52 -9.98 16 19 C 0.12 1.57 6.60 -3.60 -0.02 1.54 16 20 C 0.04 0.43 5.49 -3.70 -0.02 0.41 16 21 N -0.53 -4.99 4.44 -224.44 -1.00 -5.98 16 22 C 0.05 0.41 2.84 -66.14 -0.19 0.23 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 C -0.15 -1.06 6.15 -25.16 -0.15 -1.22 16 25 C 0.05 0.36 7.63 37.93 0.29 0.65 16 26 O -0.38 -3.74 11.65 -35.23 -0.41 -4.15 16 27 C 0.05 0.45 6.07 37.94 0.23 0.68 16 28 C 0.04 0.35 5.35 -3.68 -0.02 0.33 16 29 C 0.12 1.30 6.50 -3.59 -0.02 1.28 16 30 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 31 H 0.12 3.25 6.21 -52.48 -0.33 2.93 16 32 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.10 1.85 6.93 -51.93 -0.36 1.49 16 36 H 0.07 1.20 7.57 -51.93 -0.39 0.81 16 37 H 0.09 1.43 7.06 -51.93 -0.37 1.06 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.73 7.06 -51.93 -0.37 0.36 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.60 6.23 -51.93 -0.32 0.28 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.64 8.02 -51.93 -0.42 0.22 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 0.65 5.94 -51.93 -0.31 0.34 16 49 H 0.09 1.00 6.02 -51.93 -0.31 0.69 16 50 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -31.55 389.11 -11.19 -42.74 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.73 Total: 5.86 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -3.06 Total: -15.81 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.91 Total: -36.01 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.32 Total: -16.56 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.55 -11.19 -42.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777415476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.205 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds