Wall clock time and date at job start Wed Apr 1 2020 03:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86798 * 119.99902 * 2 1 4 4 H 1.48495 * 109.47312 * 270.00430 * 3 2 1 5 5 H 1.48509 * 109.47004 * 30.00516 * 3 2 1 6 6 H 1.48502 * 109.47095 * 150.00321 * 3 2 1 7 7 C 1.39949 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99464 * 165.60257 * 7 2 1 9 9 C 1.41391 * 119.99818 * 345.59879 * 7 2 1 10 10 C 1.40724 * 120.24797 * 333.24805 * 9 7 2 11 11 C 1.37607 * 119.74689 * 180.02562 * 10 9 7 12 12 C 1.38651 * 120.24692 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.50166 * 359.72549 * 12 11 10 14 14 C 1.37641 * 120.24871 * 0.55591 * 13 12 11 15 15 C 1.50698 * 120.13052 * 179.72397 * 14 13 12 16 16 C 1.50699 * 109.47073 * 264.72295 * 15 14 13 17 17 O 1.21274 * 119.99847 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99881 * 179.97438 * 16 15 14 19 19 C 1.47084 * 120.88044 * 179.97438 * 18 16 15 20 20 C 1.53234 * 108.52041 * 128.79551 * 19 18 16 21 21 N 1.46904 * 109.33940 * 53.83008 * 20 19 18 22 22 C 1.46903 * 110.99812 * 172.74798 * 21 20 19 23 23 H 1.09001 * 110.46037 * 57.96465 * 22 21 20 24 24 C 1.54511 * 110.51103 * 180.56923 * 22 21 20 25 25 C 1.54479 * 104.06076 * 118.64106 * 24 22 21 26 26 O 1.44426 * 104.80398 * 23.98152 * 25 24 22 27 27 C 1.44420 * 105.27639 * 319.48628 * 26 25 24 28 28 C 1.46901 * 111.26967 * 296.89274 * 21 20 19 29 29 C 1.47078 * 120.88272 * 359.97438 * 18 16 15 30 30 H 0.97003 * 120.00343 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.12834 * 359.97438 * 10 9 7 32 32 H 1.07998 * 119.87126 * 179.97438 * 11 10 9 33 33 H 1.07992 * 119.74698 * 180.02562 * 12 11 10 34 34 H 1.07997 * 119.87886 * 180.29726 * 13 12 11 35 35 H 1.09002 * 109.47200 * 144.71764 * 15 14 13 36 36 H 1.09002 * 109.46991 * 24.72273 * 15 14 13 37 37 H 1.09002 * 109.62381 * 9.08717 * 19 18 16 38 38 H 1.09003 * 109.62822 * 248.50742 * 19 18 16 39 39 H 1.08997 * 109.49774 * 173.79356 * 20 19 18 40 40 H 1.09006 * 109.49530 * 293.87059 * 20 19 18 41 41 H 1.08997 * 110.51434 * 237.28994 * 24 22 21 42 42 H 1.09002 * 110.50806 * 359.86664 * 24 22 21 43 43 H 1.08999 * 110.37049 * 142.81175 * 25 24 22 44 44 H 1.09000 * 110.37875 * 265.03616 * 25 24 22 45 45 H 1.09005 * 110.37010 * 281.68034 * 27 26 25 46 46 H 1.08995 * 110.37536 * 159.34105 * 27 26 25 47 47 H 1.08997 * 109.49269 * 303.14998 * 28 21 20 48 48 H 1.08997 * 109.51104 * 183.07635 * 28 21 20 49 49 H 1.08997 * 109.62923 * 350.91182 * 29 18 16 50 50 H 1.09000 * 109.62953 * 111.49547 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4896 2.0465 -1.4000 5 1 1.4396 2.6527 0.7002 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0625 -1.2265 -0.2331 9 6 1.3343 -2.4174 0.3035 10 6 0.1891 -2.4026 1.1212 11 6 -0.4583 -3.5818 1.4109 12 6 0.0142 -4.7815 0.9009 13 6 1.1382 -4.8073 0.0902 14 6 1.8050 -3.6407 -0.2080 15 6 3.0304 -3.6726 -1.0845 16 6 4.2644 -3.7263 -0.2211 17 8 4.1590 -3.7371 0.9870 18 7 5.4849 -3.7624 -0.7916 19 6 6.7021 -3.8145 0.0325 20 6 7.5754 -4.9725 -0.4618 21 7 7.8081 -4.8248 -1.9048 22 6 8.7797 -5.8162 -2.3855 23 1 8.4322 -6.8264 -2.1690 24 6 9.0266 -5.6417 -3.9008 25 6 10.5321 -5.3098 -4.0000 26 8 11.1120 -5.8635 -2.7987 27 6 10.1653 -5.5692 -1.7485 28 6 6.5504 -4.9117 -2.6589 29 6 5.6351 -3.7507 -2.2546 30 1 -0.4851 0.8400 0.0004 31 1 -0.1799 -1.4694 1.5205 32 1 -1.3371 -3.5729 2.0385 33 1 -0.5004 -5.7021 1.1330 34 1 1.4947 -5.7468 -0.3055 35 1 3.0583 -2.7754 -1.7029 36 1 2.9963 -4.5542 -1.7248 37 1 6.4313 -3.9793 1.0754 38 1 7.2493 -2.8765 -0.0628 39 1 8.5302 -4.9583 0.0639 40 1 7.0683 -5.9181 -0.2701 41 1 8.8034 -6.5662 -4.4331 42 1 8.4259 -4.8213 -4.2936 43 1 10.9667 -5.7793 -4.8824 44 1 10.6815 -4.2306 -4.0328 45 1 10.2585 -4.5296 -1.4341 46 1 10.3181 -6.2379 -0.9015 47 1 6.0576 -5.8581 -2.4365 48 1 6.7615 -4.8535 -3.7267 49 1 4.6590 -3.8735 -2.7239 50 1 6.0799 -2.8068 -2.5695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777415476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:55 Heat of formation + Delta-G solvation = -64.464673 kcal Electronic energy + Delta-G solvation = -30594.102477 eV Core-core repulsion = 26585.197688 eV Total energy + Delta-G solvation = -4008.904788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.40317 -40.51119 -39.32366 -38.34063 -35.58586 -35.49238 -33.65612 -32.42506 -31.68053 -31.33834 -30.07578 -28.59331 -27.23917 -26.65544 -24.99263 -23.26274 -22.95162 -22.76885 -21.64271 -21.16167 -19.82325 -19.04120 -18.31590 -17.42420 -17.32453 -17.18958 -16.79930 -16.49579 -16.38593 -16.14460 -15.80547 -15.49702 -15.32793 -15.30750 -14.98253 -14.57436 -14.38096 -14.19421 -13.80457 -13.63810 -13.37585 -13.31000 -13.12251 -12.91872 -12.80482 -12.74281 -12.66813 -12.51809 -12.35875 -12.17245 -12.12968 -11.94702 -11.80734 -11.73287 -11.33000 -11.19975 -11.03246 -10.76934 -10.69380 -9.77157 -9.32308 -9.22150 -9.15701 -8.57881 -6.29771 0.99219 1.12860 1.35963 1.47240 1.53417 1.79266 2.08924 2.20462 2.66667 2.79242 3.14341 3.50982 3.63574 3.83412 3.84995 3.97592 4.06003 4.07839 4.22003 4.27067 4.27805 4.33647 4.38014 4.40632 4.44878 4.57352 4.59026 4.68933 4.70345 4.76913 4.77546 4.82108 4.84703 4.86052 4.88896 5.00159 5.03385 5.06618 5.09118 5.19898 5.36813 5.54630 5.58017 5.71885 5.77471 5.92312 6.03079 6.06994 6.16486 6.21028 6.42005 6.48413 6.73979 6.99727 7.11114 7.35691 8.38263 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.002736 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.060478 B =10230.415533 C =11344.094801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.035 3.965 3 Si 0.971 3.029 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.480 4.480 8 H 0.069 0.931 9 C 0.095 3.905 10 C -0.193 4.193 11 C -0.118 4.118 12 C -0.242 4.242 13 C -0.093 4.093 14 C -0.187 4.187 15 C -0.064 4.064 16 C 0.518 3.482 17 O -0.577 6.577 18 N -0.620 5.620 19 C 0.115 3.885 20 C 0.053 3.947 21 N -0.529 5.529 22 C 0.052 3.948 23 H 0.053 0.947 24 C -0.147 4.147 25 C 0.044 3.956 26 O -0.399 6.399 27 C 0.053 3.947 28 C 0.043 3.957 29 C 0.107 3.893 30 H 0.285 0.715 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.031 0.969 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.035 0.965 48 H 0.117 0.883 49 H 0.102 0.898 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.879 -8.426 -11.025 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.179 4.179 3 Si 0.793 3.207 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.510 4.510 8 H 0.087 0.913 9 C 0.093 3.907 10 C -0.212 4.212 11 C -0.136 4.136 12 C -0.261 4.261 13 C -0.111 4.111 14 C -0.188 4.188 15 C -0.103 4.103 16 C 0.308 3.692 17 O -0.455 6.455 18 N -0.355 5.355 19 C -0.008 4.008 20 C -0.076 4.076 21 N -0.255 5.255 22 C -0.057 4.057 23 H 0.071 0.929 24 C -0.185 4.185 25 C -0.032 4.032 26 O -0.318 6.318 27 C -0.024 4.024 28 C -0.085 4.085 29 C -0.015 4.015 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.049 0.951 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.113 0.887 47 H 0.054 0.946 48 H 0.135 0.865 49 H 0.120 0.880 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 18.023 -7.928 -10.469 22.300 hybrid contribution -0.691 0.199 0.671 0.984 sum 17.331 -7.729 -9.797 21.357 Atomic orbital electron populations 1.69874 1.08751 1.30150 1.36720 1.26661 0.95458 1.04147 0.91604 0.85365 0.78841 0.76717 0.79797 1.17773 1.19305 1.19343 1.19574 0.96332 0.91702 1.43402 0.91335 1.17737 0.91483 0.92827 0.88648 1.21333 1.00305 0.96816 1.02754 1.20953 0.99170 0.93394 1.00119 1.20718 1.01302 0.96897 1.07154 1.20720 0.95683 0.96511 0.98173 1.19562 0.99933 0.93633 1.05703 1.20261 0.89084 1.04167 0.96821 1.21192 0.85158 0.74290 0.88592 1.90645 1.86900 1.50831 1.17139 1.48303 1.04971 1.73947 1.08289 1.21626 0.84594 0.99284 0.95284 1.22395 1.00022 0.96251 0.88941 1.62066 1.10874 1.49414 1.03115 1.23022 0.92876 0.93721 0.96083 0.92863 1.23084 0.97274 1.03946 0.94188 1.23527 0.92333 0.99021 0.88351 1.89111 1.44453 1.79326 1.18887 1.23491 0.86195 1.01687 0.91073 1.22600 0.88889 0.96861 1.00189 1.22073 1.01291 0.99844 0.78307 0.90397 0.88438 0.87675 0.86692 0.86702 0.88517 0.87271 0.91088 0.90593 0.87924 0.95120 0.89523 0.88323 0.87841 0.91692 0.91125 0.88685 0.94635 0.86521 0.87980 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.22 10.91 21.83 0.24 -43.98 16 2 C 0.04 1.82 5.20 85.26 0.44 2.26 16 3 Si 0.97 39.38 29.58 68.60 2.03 41.41 16 4 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.48 -26.17 8.13 23.46 0.19 -25.98 16 8 H 0.07 3.66 6.69 -2.91 -0.02 3.64 16 9 C 0.10 5.28 5.56 -21.29 -0.12 5.16 16 10 C -0.19 -10.79 8.68 22.73 0.20 -10.59 16 11 C -0.12 -5.89 10.02 22.22 0.22 -5.66 16 12 C -0.24 -11.11 10.05 22.46 0.23 -10.89 16 13 C -0.09 -4.21 9.66 22.22 0.21 -4.00 16 14 C -0.19 -9.04 4.43 -19.40 -0.09 -9.12 16 15 C -0.06 -2.45 3.55 29.10 0.10 -2.34 16 16 C 0.52 20.30 7.33 87.66 0.64 20.95 16 17 O -0.58 -28.56 15.49 -3.01 -0.05 -28.61 16 18 N -0.62 -18.07 3.01 -817.89 -2.46 -20.53 16 19 C 0.11 2.99 6.60 86.35 0.57 3.56 16 20 C 0.05 1.01 5.49 86.38 0.47 1.48 16 21 N -0.53 -8.59 4.44 -864.01 -3.83 -12.43 16 22 C 0.05 0.72 2.84 45.93 0.13 0.85 16 23 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 24 C -0.15 -1.57 6.15 31.61 0.19 -1.37 16 25 C 0.04 0.54 7.63 72.48 0.55 1.09 16 26 O -0.40 -7.13 11.65 -148.98 -1.74 -8.87 16 27 C 0.05 0.78 6.07 72.49 0.44 1.22 16 28 C 0.04 0.66 5.35 86.39 0.46 1.12 16 29 C 0.11 2.17 6.50 86.36 0.56 2.73 16 30 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 31 H 0.10 5.71 6.21 -2.91 -0.02 5.70 16 32 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 33 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 34 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 35 H 0.10 3.68 6.93 -2.39 -0.02 3.66 16 36 H 0.11 3.30 7.57 -2.39 -0.02 3.28 16 37 H 0.07 2.21 7.06 -2.39 -0.02 2.19 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.10 1.59 7.06 -2.39 -0.02 1.57 16 40 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.10 0.91 6.23 -2.39 -0.01 0.90 16 43 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 1.09 8.02 -2.38 -0.02 1.07 16 46 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.12 1.21 5.94 -2.39 -0.01 1.20 16 49 H 0.10 1.90 6.02 -2.39 -0.01 1.88 16 50 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -71.35 389.11 0.55 -70.80 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.94 Total: 31.74 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 5.42 Total: -29.53 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: -6.06 Total: -76.94 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.78 Total: -37.48 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -71.35 0.55 -70.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777415476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.333 kcal (2) G-P(sol) polarization free energy of solvation -71.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds