Wall clock time and date at job start Wed Apr 1 2020 03:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99732 * 2 1 4 4 H 1.48499 * 109.47153 * 270.00186 * 3 2 1 5 5 H 1.48500 * 109.47274 * 30.00236 * 3 2 1 6 6 H 1.48506 * 109.46845 * 150.00467 * 3 2 1 7 7 C 1.37872 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99734 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00475 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47421 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47198 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47223 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00026 * 180.27639 * 12 11 10 14 14 O 1.21347 * 119.99931 * 359.72309 * 13 12 11 15 15 C 1.49450 * 119.99862 * 179.72554 * 13 12 11 16 16 O 1.21352 * 120.00078 * 6.74668 * 15 13 12 17 17 N 1.34781 * 119.99926 * 186.74215 * 15 13 12 18 18 C 1.46924 * 120.63026 * 8.42920 * 17 15 13 19 19 C 1.53617 * 108.54482 * 126.36521 * 18 17 15 20 20 C 1.53042 * 109.24358 * 54.85479 * 19 18 17 21 21 C 1.50696 * 109.46086 * 178.49054 * 20 19 18 22 22 C 1.38231 * 120.00145 * 59.79721 * 21 20 19 23 23 C 1.38242 * 120.00030 * 179.76320 * 22 21 20 24 24 C 1.38231 * 119.99684 * 0.51009 * 23 22 21 25 25 C 1.38232 * 120.00258 * 359.74066 * 24 23 22 26 26 C 1.38236 * 120.00122 * 0.02562 * 25 24 23 27 27 C 1.53042 * 109.53728 * 298.51495 * 20 19 18 28 28 C 1.46925 * 120.63155 * 188.70271 * 17 15 13 29 29 H 0.97000 * 119.99781 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46787 * 60.00378 * 9 7 2 31 31 H 1.08998 * 109.46850 * 300.00146 * 9 7 2 32 32 H 1.09006 * 109.46501 * 59.99845 * 10 9 7 33 33 H 1.09000 * 109.46975 * 300.00640 * 10 9 7 34 34 H 1.08999 * 109.47342 * 59.99804 * 11 10 9 35 35 H 1.09000 * 109.47680 * 300.00208 * 11 10 9 36 36 H 0.96993 * 119.99648 * 0.02562 * 12 11 10 37 37 H 1.09006 * 109.58568 * 246.20337 * 18 17 15 38 38 H 1.09003 * 109.58701 * 6.62192 * 18 17 15 39 39 H 1.08999 * 109.63577 * 294.86536 * 19 18 17 40 40 H 1.09002 * 109.46062 * 174.73795 * 19 18 17 41 41 H 1.09002 * 109.44594 * 58.52410 * 20 19 18 42 42 H 1.08001 * 119.99824 * 359.97438 * 22 21 20 43 43 H 1.07995 * 119.99780 * 180.22784 * 23 22 21 44 44 H 1.08000 * 119.99906 * 179.72606 * 24 23 22 45 45 H 1.08009 * 120.00318 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.00248 * 179.97438 * 26 25 24 47 47 H 1.09003 * 109.49459 * 301.40845 * 27 20 19 48 48 H 1.09004 * 109.49807 * 181.31439 * 27 20 19 49 49 H 1.09003 * 109.58508 * 353.37904 * 28 17 15 50 50 H 1.08997 * 109.58377 * 113.65755 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 7 2.4323 -6.1006 -0.0006 13 6 1.9831 -7.3713 -0.0066 14 8 0.7900 -7.5930 -0.0075 15 6 2.9543 -8.5072 -0.0122 16 8 4.1418 -8.2907 0.1122 17 7 2.5111 -9.7720 -0.1552 18 6 1.1057 -10.0394 -0.4899 19 6 1.0625 -10.9408 -1.7331 20 6 1.8967 -12.1975 -1.4742 21 6 1.8275 -13.1026 -2.6771 22 6 2.2686 -12.6522 -3.9073 23 6 2.2096 -13.4842 -5.0097 24 6 1.6998 -14.7629 -4.8840 25 6 1.2540 -15.2116 -3.6549 26 6 1.3174 -14.3813 -2.5515 27 6 3.3525 -11.8015 -1.2171 28 6 3.4229 -10.9097 0.0264 29 1 -0.4850 0.8401 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8719 -3.6043 0.8895 33 1 2.8720 -3.6043 -0.8905 34 1 0.8539 -5.0445 -0.8914 35 1 0.8533 -5.0451 0.8885 36 1 3.3859 -5.9234 0.0005 37 1 0.6202 -10.5423 0.3466 38 1 0.5950 -9.0997 -0.7002 39 1 1.4703 -10.4035 -2.5894 40 1 0.0308 -11.2252 -1.9397 41 1 1.5034 -12.7209 -0.6027 42 1 2.6624 -11.6514 -4.0065 43 1 2.5576 -13.1335 -5.9701 44 1 1.6497 -15.4114 -5.7462 45 1 0.8553 -16.2106 -3.5567 46 1 0.9687 -14.7316 -1.5913 47 1 3.7386 -11.2561 -2.0783 48 1 3.9505 -12.6984 -1.0559 49 1 4.4415 -10.5444 0.1569 50 1 3.1240 -11.4806 0.9055 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804719376.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:07 Heat of formation + Delta-G solvation = -70.863050 kcal Electronic energy + Delta-G solvation = -28890.214212 eV Core-core repulsion = 24881.031969 eV Total energy + Delta-G solvation = -4009.182243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.09370 -40.61769 -39.70642 -38.43149 -37.13450 -35.35325 -34.68517 -33.04854 -32.16184 -31.76542 -30.93683 -29.01817 -27.10895 -25.59454 -24.54459 -23.95659 -23.48228 -22.45329 -22.38328 -21.39651 -20.37905 -18.77516 -18.44257 -18.17253 -17.73050 -17.31175 -16.84190 -16.43461 -16.28849 -16.16818 -15.98429 -15.76034 -15.25449 -15.20512 -14.99684 -14.73483 -14.49300 -14.29528 -14.22350 -13.84020 -13.79315 -13.72942 -13.49301 -13.15150 -12.92862 -12.76200 -12.57676 -12.47487 -12.40334 -12.23886 -12.15120 -11.77339 -11.69406 -11.68745 -11.52271 -11.35033 -11.21067 -10.54446 -10.40823 -10.19695 -9.84599 -9.78485 -9.54300 -8.19283 -6.30100 0.26974 0.48024 0.53467 1.23798 1.42382 1.43013 1.54162 2.04328 2.39198 2.45353 2.90290 3.14702 3.23874 3.61716 3.71028 3.96395 4.08160 4.08409 4.10881 4.18412 4.18569 4.28364 4.31293 4.35534 4.44733 4.52645 4.60198 4.68167 4.75516 4.77668 4.82481 4.84998 4.91884 4.95242 5.02880 5.09140 5.15160 5.18781 5.19382 5.26640 5.32346 5.44388 5.52318 5.62376 5.67030 5.71144 5.77003 5.84705 5.92165 6.15943 6.17154 6.24351 6.64724 6.86645 6.87899 7.39282 8.92462 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.001620 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.497352 B =17276.735869 C =17694.882455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.107 4.107 11 C 0.128 3.872 12 N -0.685 5.685 13 C 0.501 3.499 14 O -0.531 6.531 15 C 0.510 3.490 16 O -0.545 6.545 17 N -0.576 5.576 18 C 0.069 3.931 19 C -0.119 4.119 20 C -0.044 4.044 21 C -0.081 4.081 22 C -0.128 4.128 23 C -0.131 4.131 24 C -0.135 4.135 25 C -0.127 4.127 26 C -0.124 4.124 27 C -0.116 4.116 28 C 0.105 3.895 29 H 0.263 0.737 30 H -0.003 1.003 31 H -0.003 1.003 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.418 0.582 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.058 0.942 48 H 0.094 0.906 49 H 0.086 0.914 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.727 -34.296 -5.362 35.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.081 0.919 9 C -0.013 4.013 10 C -0.145 4.145 11 C 0.005 3.995 12 N -0.337 5.337 13 C 0.283 3.717 14 O -0.411 6.411 15 C 0.292 3.708 16 O -0.423 6.423 17 N -0.308 5.308 18 C -0.052 4.052 19 C -0.157 4.157 20 C -0.062 4.062 21 C -0.081 4.081 22 C -0.146 4.146 23 C -0.149 4.149 24 C -0.153 4.153 25 C -0.144 4.144 26 C -0.142 4.142 27 C -0.154 4.154 28 C -0.016 4.016 29 H 0.072 0.928 30 H 0.016 0.984 31 H 0.015 0.985 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.255 0.745 37 H 0.103 0.897 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.135 0.865 43 H 0.148 0.852 44 H 0.153 0.847 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.077 0.923 48 H 0.112 0.888 49 H 0.104 0.896 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.370 -34.224 -5.287 34.904 hybrid contribution 0.476 1.257 -0.136 1.351 sum 4.846 -32.967 -5.423 33.760 Atomic orbital electron populations 1.70096 1.07761 1.27755 1.51601 1.25962 0.95749 1.03333 0.94781 0.85453 0.78673 0.78527 0.78418 1.19877 1.20927 1.18716 1.21685 0.93701 0.92193 1.50576 0.91851 1.18932 0.94340 0.92521 0.95487 1.21643 0.98654 0.92012 1.02146 1.21487 0.91525 0.84370 1.02131 1.45935 1.12267 1.04684 1.70805 1.20334 0.88604 0.84717 0.78047 1.90502 1.17154 1.83499 1.49913 1.19990 0.87770 0.84653 0.78379 1.90740 1.16913 1.84478 1.50192 1.48085 1.12672 1.04279 1.65800 1.22988 0.80014 1.04142 0.98057 1.22031 1.01364 0.95153 0.97132 1.20179 0.95580 0.94411 0.96037 1.19911 0.98622 0.94888 0.94686 1.21146 1.00562 0.99905 0.92977 1.21391 0.99800 0.94613 0.99086 1.21434 0.99089 0.96291 0.98454 1.21449 0.99606 1.00572 0.92818 1.21336 0.99726 0.93413 0.99739 1.21909 0.96533 0.99746 0.97193 1.21939 0.94577 0.85906 0.99202 0.92803 0.98436 0.98466 0.91581 0.91524 0.91474 0.91616 0.74466 0.89676 0.85891 0.92436 0.89524 0.88573 0.86534 0.85225 0.84677 0.84346 0.84499 0.92307 0.88787 0.89553 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.96 43.79 29.54 68.60 2.03 45.81 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.54 -30.23 9.11 25.60 0.23 -30.00 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.11 -4.07 5.27 30.59 0.16 -3.91 16 11 C 0.13 4.27 5.67 86.38 0.49 4.76 16 12 N -0.69 -19.84 5.55 -464.42 -2.58 -22.42 16 13 C 0.50 14.46 7.74 87.27 0.68 15.13 16 14 O -0.53 -16.71 13.18 -3.24 -0.04 -16.75 16 15 C 0.51 13.32 7.73 87.27 0.67 14.00 16 16 O -0.54 -16.18 15.93 -3.25 -0.05 -16.23 16 17 N -0.58 -11.65 2.97 -819.66 -2.43 -14.08 16 18 C 0.07 1.24 6.01 86.51 0.52 1.76 16 19 C -0.12 -1.73 5.16 30.82 0.16 -1.57 16 20 C -0.04 -0.51 2.32 -11.51 -0.03 -0.54 16 21 C -0.08 -1.07 4.78 -19.87 -0.09 -1.17 16 22 C -0.13 -1.88 8.74 22.27 0.19 -1.69 16 23 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16 24 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 25 C -0.13 -1.43 10.05 22.27 0.22 -1.20 16 26 C -0.12 -1.45 9.67 22.27 0.22 -1.24 16 27 C -0.12 -1.43 5.15 30.67 0.16 -1.27 16 28 C 0.10 1.58 6.44 86.36 0.56 2.13 16 29 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.42 11.04 7.96 -92.71 -0.74 10.30 16 37 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.12 2.87 4.30 -48.52 -0.21 2.66 16 39 H 0.06 0.98 7.43 -2.39 -0.02 0.96 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.10 0.87 7.88 -2.39 -0.02 0.86 16 42 H 0.12 1.72 7.14 -2.91 -0.02 1.70 16 43 H 0.13 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 45 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 46 H 0.14 1.08 7.95 -2.91 -0.02 1.06 16 47 H 0.06 0.89 7.46 -2.39 -0.02 0.87 16 48 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.09 1.52 7.01 -2.39 -0.02 1.51 16 50 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -67.68 404.91 2.41 -65.27 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.00 Total: 20.18 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 5.20 Total: -5.90 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -4.72 Total: -92.40 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.09 Total: -32.98 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -67.68 2.41 -65.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804719376.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.588 kcal (2) G-P(sol) polarization free energy of solvation -67.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds