Wall clock time and date at job start Wed Apr 1 2020 03:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86798 * 119.99863 * 2 1 4 4 H 1.48503 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47303 * 300.00388 * 3 2 1 6 6 H 1.48503 * 109.47010 * 60.00469 * 3 2 1 7 7 C 1.39939 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99911 * 168.21135 * 7 2 1 9 9 C 1.41395 * 120.00646 * 348.20696 * 7 2 1 10 10 C 1.40736 * 120.23824 * 332.71303 * 9 7 2 11 11 C 1.37600 * 119.74482 * 179.97438 * 10 9 7 12 12 C 1.38657 * 120.24765 * 0.02562 * 11 10 9 13 13 C 1.38614 * 120.50148 * 0.26974 * 12 11 10 14 14 C 1.37643 * 120.24561 * 359.45123 * 13 12 11 15 15 C 1.50699 * 120.12733 * 180.25345 * 14 13 12 16 16 C 1.50696 * 109.47317 * 265.29531 * 15 14 13 17 17 O 1.21283 * 119.99850 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00354 * 179.97438 * 16 15 14 19 19 C 1.47020 * 125.64919 * 359.69452 * 18 16 15 20 20 C 1.54324 * 107.26653 * 178.84964 * 19 18 16 21 21 C 1.55158 * 103.02320 * 338.13821 * 20 19 18 22 22 H 1.09000 * 111.00461 * 277.23702 * 21 20 19 23 23 N 1.46897 * 111.00631 * 153.37998 * 21 20 19 24 24 C 1.48535 * 110.99980 * 60.08897 * 23 21 20 25 25 C 1.54933 * 103.23135 * 159.71898 * 24 23 21 26 26 C 1.54597 * 102.91887 * 322.58784 * 25 24 23 27 27 H 1.08996 * 110.30953 * 263.03807 * 26 25 24 28 28 O 1.42908 * 110.31074 * 140.87210 * 26 25 24 29 29 C 1.47900 * 110.99970 * 177.48177 * 23 21 20 30 30 C 1.47420 * 125.64642 * 179.97438 * 18 16 15 31 31 H 0.96999 * 120.00378 * 359.97438 * 1 2 3 32 32 H 1.07997 * 120.13149 * 359.97438 * 10 9 7 33 33 H 1.07993 * 119.87593 * 180.02562 * 11 10 9 34 34 H 1.07997 * 119.75357 * 180.02562 * 12 11 10 35 35 H 1.08000 * 119.87639 * 179.70267 * 13 12 11 36 36 H 1.09005 * 109.47317 * 25.29648 * 15 14 13 37 37 H 1.09000 * 109.47461 * 145.29208 * 15 14 13 38 38 H 1.09003 * 109.87891 * 298.39719 * 19 18 16 39 39 H 1.09000 * 109.87845 * 59.55411 * 19 18 16 40 40 H 1.09002 * 110.85001 * 219.67041 * 20 19 18 41 41 H 1.08999 * 110.67385 * 96.52259 * 20 19 18 42 42 H 1.08996 * 110.66722 * 278.15742 * 24 23 21 43 43 H 1.09003 * 110.66339 * 41.28243 * 24 23 21 44 44 H 1.08997 * 110.72989 * 204.23073 * 25 24 23 45 45 H 1.08993 * 110.87570 * 81.01304 * 25 24 23 46 46 H 0.96698 * 113.99873 * 64.27426 * 28 26 25 47 47 H 1.08996 * 109.91777 * 333.51448 * 29 23 21 48 48 H 1.09006 * 109.91309 * 94.60846 * 29 23 21 49 49 H 1.08996 * 110.37293 * 322.92911 * 30 18 16 50 50 H 1.09000 * 110.36567 * 85.14596 * 30 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8833 2.3965 -1.2125 6 1 1.8835 2.3964 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0708 -1.2217 -0.1916 9 6 1.3234 -2.4237 0.2492 10 6 0.1530 -2.4285 1.0307 11 6 -0.5053 -3.6135 1.2668 12 6 -0.0194 -4.7998 0.7385 13 6 1.1358 -4.8078 -0.0275 14 6 1.8075 -3.6335 -0.2814 15 6 3.0600 -3.6444 -1.1193 16 6 4.2659 -3.7259 -0.2193 17 8 4.1223 -3.7711 0.9842 18 7 5.5038 -3.7495 -0.7516 19 6 5.8203 -3.7084 -2.1868 20 6 7.3579 -3.7274 -2.3174 21 6 7.8329 -3.2156 -0.9319 22 1 7.8130 -2.1266 -0.8898 23 7 9.1717 -3.7284 -0.6117 24 6 10.1661 -3.2892 -1.6240 25 6 11.5181 -3.4444 -0.8836 26 6 11.1737 -3.0106 0.5597 27 1 11.4436 -1.9661 0.7153 28 8 11.8496 -3.8445 1.5030 29 6 9.6493 -3.1925 0.6814 30 6 6.7646 -3.8267 0.0085 31 1 -0.4851 0.8400 0.0004 32 1 -0.2271 -1.5058 1.4435 33 1 -1.4039 -3.6196 1.8659 34 1 -0.5427 -5.7252 0.9286 35 1 1.5080 -5.7383 -0.4301 36 1 3.0444 -4.5076 -1.7849 37 1 3.1093 -2.7304 -1.7111 38 1 5.3931 -4.5784 -2.6856 39 1 5.4238 -2.7939 -2.6277 40 1 7.6882 -3.0564 -3.1104 41 1 7.7163 -4.7409 -2.4977 42 1 10.1319 -3.9343 -2.5019 43 1 9.9973 -2.2491 -1.9029 44 1 12.2720 -2.7857 -1.3148 45 1 11.8558 -4.4805 -0.9047 46 1 12.8134 -3.7720 1.4723 47 1 9.1756 -2.2318 0.8829 48 1 9.4190 -3.8952 1.4823 49 1 6.6901 -3.2446 0.9270 50 1 7.0070 -4.8646 0.2367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861714205.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:38 Heat of formation + Delta-G solvation = -54.083250 kcal Electronic energy + Delta-G solvation = -30264.820449 eV Core-core repulsion = 26256.365832 eV Total energy + Delta-G solvation = -4008.454616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.20241 -39.13517 -37.70825 -36.83227 -35.63977 -33.56770 -32.15930 -31.40537 -30.17893 -29.39462 -28.53160 -28.15784 -26.36183 -24.93565 -23.15554 -22.35718 -21.12035 -20.87033 -20.47408 -19.90237 -18.58590 -17.99522 -17.11724 -16.96381 -16.60679 -15.50746 -15.38320 -15.13126 -14.76123 -14.46812 -14.39758 -14.21132 -14.09485 -13.75877 -13.51246 -13.35194 -12.85256 -12.78054 -12.58835 -12.40955 -12.34465 -11.98672 -11.83090 -11.70638 -11.53177 -11.50557 -11.14428 -11.10273 -11.05981 -10.98590 -10.94373 -10.88816 -10.62154 -10.36410 -10.33859 -9.45231 -9.30834 -9.17078 -9.12653 -8.76710 -8.28310 -7.25766 -7.22315 -6.65940 -4.31342 2.79640 2.97007 3.08253 3.13177 3.28299 3.29468 3.37149 3.69997 3.81957 3.96487 4.18524 4.23451 4.44859 4.58122 4.71404 4.72493 4.87433 4.92313 5.12952 5.16747 5.25827 5.29486 5.36355 5.42205 5.54555 5.58951 5.64903 5.68442 5.71958 5.83011 5.86500 5.94312 5.95671 6.08031 6.15337 6.33440 6.47501 6.50722 6.55465 6.59753 6.78313 6.85394 7.13651 7.27618 7.35444 7.47864 7.69303 7.91972 7.99160 8.13468 8.17867 8.36664 8.70126 8.87010 8.96980 9.06383 10.27136 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.002775 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.883333 B =10086.395896 C =11163.133862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.074 3.926 3 Si 0.904 3.096 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.454 4.454 8 H 0.073 0.927 9 C 0.127 3.873 10 C -0.156 4.156 11 C -0.109 4.109 12 C -0.236 4.236 13 C -0.083 4.083 14 C -0.179 4.179 15 C -0.064 4.064 16 C 0.532 3.468 17 O -0.518 6.518 18 N -0.632 5.632 19 C 0.105 3.895 20 C -0.121 4.121 21 C 0.058 3.942 22 H 0.061 0.939 23 N -0.502 5.502 24 C 0.038 3.962 25 C -0.157 4.157 26 C 0.094 3.906 27 H 0.063 0.937 28 O -0.559 6.559 29 C 0.038 3.962 30 C 0.119 3.881 31 H 0.278 0.722 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.377 0.623 47 H 0.057 0.943 48 H 0.095 0.905 49 H 0.073 0.927 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.143 -2.856 -6.794 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.729 3.271 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.091 0.909 9 C 0.124 3.876 10 C -0.175 4.175 11 C -0.128 4.128 12 C -0.256 4.256 13 C -0.101 4.101 14 C -0.181 4.181 15 C -0.104 4.104 16 C 0.322 3.678 17 O -0.392 6.392 18 N -0.370 5.370 19 C -0.019 4.019 20 C -0.160 4.160 21 C -0.051 4.051 22 H 0.079 0.921 23 N -0.227 5.227 24 C -0.090 4.090 25 C -0.195 4.195 26 C 0.035 3.965 27 H 0.081 0.919 28 O -0.364 6.364 29 C -0.089 4.089 30 C -0.004 4.004 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.075 0.925 48 H 0.114 0.886 49 H 0.091 0.909 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 20.077 -3.435 -5.923 21.212 hybrid contribution 0.974 1.911 -0.271 2.162 sum 21.051 -1.524 -6.194 21.996 Atomic orbital electron populations 1.69806 1.07334 1.28719 1.36855 1.25864 0.94760 1.01031 0.92528 0.86326 0.80831 0.81403 0.78516 1.18706 1.20027 1.19763 1.19493 0.95748 0.90486 1.42719 0.90927 1.17358 0.91153 0.91316 0.87735 1.21379 0.98318 0.96623 1.01209 1.20696 0.98564 0.93577 0.99916 1.20328 1.00356 0.96463 1.08424 1.20304 0.95637 0.95458 0.98718 1.19112 0.98131 0.94378 1.06493 1.20237 0.90501 1.02767 0.96871 1.20995 0.82360 0.74807 0.89604 1.90691 1.85055 1.47891 1.15531 1.48597 1.05416 1.76178 1.06801 1.21938 0.94949 1.02096 0.82932 1.22675 0.94460 1.02791 0.96033 1.23027 0.88700 0.97307 0.96103 0.92088 1.64770 1.00921 1.55156 1.01856 1.23150 0.90648 0.99298 0.95914 1.23249 0.97456 1.03128 0.95709 1.22647 0.92897 0.93114 0.87867 0.91938 1.86584 1.23266 1.66917 1.59661 1.22854 0.92363 1.00073 0.93655 1.21971 0.82459 1.01202 0.94772 0.91133 0.86163 0.89560 0.89634 0.89745 0.90687 0.88653 0.91221 0.91222 0.90346 0.89594 0.89459 0.93390 0.90783 0.89557 0.77545 0.92450 0.88627 0.90895 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.98 10.80 55.55 0.60 -20.38 16 2 C 0.07 1.90 5.24 -17.35 -0.09 1.81 16 3 Si 0.90 19.15 29.58 -169.99 -5.03 14.13 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 7 C -0.45 -12.20 8.12 -37.74 -0.31 -12.50 16 8 H 0.07 1.92 6.70 -52.48 -0.35 1.57 16 9 C 0.13 3.47 5.56 -106.83 -0.59 2.87 16 10 C -0.16 -4.26 8.67 -38.87 -0.34 -4.60 16 11 C -0.11 -2.72 10.02 -39.66 -0.40 -3.12 16 12 C -0.24 -5.64 10.05 -39.29 -0.39 -6.04 16 13 C -0.08 -1.97 9.66 -39.66 -0.38 -2.35 16 14 C -0.18 -4.44 4.43 -103.91 -0.46 -4.90 16 15 C -0.06 -1.31 4.38 -29.04 -0.13 -1.44 16 16 C 0.53 11.06 7.48 -10.99 -0.08 10.97 16 17 O -0.52 -13.11 16.29 5.55 0.09 -13.02 16 18 N -0.63 -10.20 3.33 -170.54 -0.57 -10.77 16 19 C 0.10 1.23 6.49 -3.07 -0.02 1.21 16 20 C -0.12 -1.13 5.74 -24.90 -0.14 -1.27 16 21 C 0.06 0.64 2.42 -65.57 -0.16 0.48 16 22 H 0.06 0.69 7.97 -51.93 -0.41 0.28 16 23 N -0.50 -4.99 5.15 -219.96 -1.13 -6.12 16 24 C 0.04 0.28 5.85 -1.90 -0.01 0.27 16 25 C -0.16 -1.02 6.80 -24.87 -0.17 -1.18 16 26 C 0.09 0.74 4.35 -25.37 -0.11 0.63 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 O -0.56 -4.75 13.25 -35.23 -0.47 -5.22 16 29 C 0.04 0.38 6.09 -2.76 -0.02 0.37 16 30 C 0.12 1.73 6.13 -2.54 -0.02 1.71 16 31 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 32 H 0.12 3.37 6.15 -52.49 -0.32 3.05 16 33 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 35 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.07 1.30 8.06 -51.93 -0.42 0.88 16 37 H 0.10 1.91 7.08 -51.93 -0.37 1.54 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.09 0.59 8.04 -51.93 -0.42 0.17 16 43 H 0.05 0.34 8.02 -51.93 -0.42 -0.08 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.61 8.08 -51.93 -0.42 0.19 16 46 H 0.38 1.47 9.12 45.56 0.42 1.89 16 47 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 48 H 0.10 1.11 7.97 -51.93 -0.41 0.70 16 49 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 50 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 399.56 15.07 6.02 6.02 Total: -1.00 -33.17 399.56 -11.61 -44.78 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -7.30 Total: 7.68 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -3.82 Total: -17.09 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -1.10 Total: -37.28 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.38 Total: -18.24 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.17 -11.61 -44.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861714205.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.304 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds