Wall clock time and date at job start Wed Apr 1 2020 03:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86798 * 119.99863 * 2 1 4 4 H 1.48503 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47303 * 300.00388 * 3 2 1 6 6 H 1.48503 * 109.47010 * 60.00469 * 3 2 1 7 7 C 1.39939 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99911 * 168.21135 * 7 2 1 9 9 C 1.41395 * 120.00646 * 348.20696 * 7 2 1 10 10 C 1.40736 * 120.23824 * 332.71303 * 9 7 2 11 11 C 1.37600 * 119.74482 * 179.97438 * 10 9 7 12 12 C 1.38657 * 120.24765 * 0.02562 * 11 10 9 13 13 C 1.38614 * 120.50148 * 0.26974 * 12 11 10 14 14 C 1.37643 * 120.24561 * 359.45123 * 13 12 11 15 15 C 1.50699 * 120.12733 * 180.25345 * 14 13 12 16 16 C 1.50696 * 109.47317 * 265.29531 * 15 14 13 17 17 O 1.21283 * 119.99850 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00354 * 179.97438 * 16 15 14 19 19 C 1.47020 * 125.64919 * 359.69452 * 18 16 15 20 20 C 1.54324 * 107.26653 * 178.84964 * 19 18 16 21 21 C 1.55158 * 103.02320 * 338.13821 * 20 19 18 22 22 H 1.09000 * 111.00461 * 277.23702 * 21 20 19 23 23 N 1.46897 * 111.00631 * 153.37998 * 21 20 19 24 24 C 1.48535 * 110.99980 * 60.08897 * 23 21 20 25 25 C 1.54933 * 103.23135 * 159.71898 * 24 23 21 26 26 C 1.54597 * 102.91887 * 322.58784 * 25 24 23 27 27 H 1.08996 * 110.30953 * 263.03807 * 26 25 24 28 28 O 1.42908 * 110.31074 * 140.87210 * 26 25 24 29 29 C 1.47900 * 110.99970 * 177.48177 * 23 21 20 30 30 C 1.47420 * 125.64642 * 179.97438 * 18 16 15 31 31 H 0.96999 * 120.00378 * 359.97438 * 1 2 3 32 32 H 1.07997 * 120.13149 * 359.97438 * 10 9 7 33 33 H 1.07993 * 119.87593 * 180.02562 * 11 10 9 34 34 H 1.07997 * 119.75357 * 180.02562 * 12 11 10 35 35 H 1.08000 * 119.87639 * 179.70267 * 13 12 11 36 36 H 1.09005 * 109.47317 * 25.29648 * 15 14 13 37 37 H 1.09000 * 109.47461 * 145.29208 * 15 14 13 38 38 H 1.09003 * 109.87891 * 298.39719 * 19 18 16 39 39 H 1.09000 * 109.87845 * 59.55411 * 19 18 16 40 40 H 1.09002 * 110.85001 * 219.67041 * 20 19 18 41 41 H 1.08999 * 110.67385 * 96.52259 * 20 19 18 42 42 H 1.08996 * 110.66722 * 278.15742 * 24 23 21 43 43 H 1.09003 * 110.66339 * 41.28243 * 24 23 21 44 44 H 1.08997 * 110.72989 * 204.23073 * 25 24 23 45 45 H 1.08993 * 110.87570 * 81.01304 * 25 24 23 46 46 H 0.96698 * 113.99873 * 64.27426 * 28 26 25 47 47 H 1.08996 * 109.91777 * 333.51448 * 29 23 21 48 48 H 1.09006 * 109.91309 * 94.60846 * 29 23 21 49 49 H 1.08996 * 110.37293 * 322.92911 * 30 18 16 50 50 H 1.09000 * 110.36567 * 85.14596 * 30 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8833 2.3965 -1.2125 6 1 1.8835 2.3964 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0708 -1.2217 -0.1916 9 6 1.3234 -2.4237 0.2492 10 6 0.1530 -2.4285 1.0307 11 6 -0.5053 -3.6135 1.2668 12 6 -0.0194 -4.7998 0.7385 13 6 1.1358 -4.8078 -0.0275 14 6 1.8075 -3.6335 -0.2814 15 6 3.0600 -3.6444 -1.1193 16 6 4.2659 -3.7259 -0.2193 17 8 4.1223 -3.7711 0.9842 18 7 5.5038 -3.7495 -0.7516 19 6 5.8203 -3.7084 -2.1868 20 6 7.3579 -3.7274 -2.3174 21 6 7.8329 -3.2156 -0.9319 22 1 7.8130 -2.1266 -0.8898 23 7 9.1717 -3.7284 -0.6117 24 6 10.1661 -3.2892 -1.6240 25 6 11.5181 -3.4444 -0.8836 26 6 11.1737 -3.0106 0.5597 27 1 11.4436 -1.9661 0.7153 28 8 11.8496 -3.8445 1.5030 29 6 9.6493 -3.1925 0.6814 30 6 6.7646 -3.8267 0.0085 31 1 -0.4851 0.8400 0.0004 32 1 -0.2271 -1.5058 1.4435 33 1 -1.4039 -3.6196 1.8659 34 1 -0.5427 -5.7252 0.9286 35 1 1.5080 -5.7383 -0.4301 36 1 3.0444 -4.5076 -1.7849 37 1 3.1093 -2.7304 -1.7111 38 1 5.3931 -4.5784 -2.6856 39 1 5.4238 -2.7939 -2.6277 40 1 7.6882 -3.0564 -3.1104 41 1 7.7163 -4.7409 -2.4977 42 1 10.1319 -3.9343 -2.5019 43 1 9.9973 -2.2491 -1.9029 44 1 12.2720 -2.7857 -1.3148 45 1 11.8558 -4.4805 -0.9047 46 1 12.8134 -3.7720 1.4723 47 1 9.1756 -2.2318 0.8829 48 1 9.4190 -3.8952 1.4823 49 1 6.6901 -3.2446 0.9270 50 1 7.0070 -4.8646 0.2367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861714205.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:37 Heat of formation + Delta-G solvation = -77.368964 kcal Electronic energy + Delta-G solvation = -30265.830193 eV Core-core repulsion = 26256.365832 eV Total energy + Delta-G solvation = -4009.464361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.30073 -40.28798 -39.26016 -38.16314 -36.51122 -35.50376 -33.63460 -32.70156 -31.34062 -31.03692 -29.43155 -29.27017 -27.88966 -26.78686 -24.31786 -23.07741 -22.82076 -21.97386 -21.60918 -21.19335 -20.00915 -19.05855 -18.62031 -18.08731 -17.81087 -17.31848 -16.56956 -16.38317 -16.07591 -15.74253 -15.56212 -15.34683 -15.20488 -15.04817 -14.72346 -14.60495 -14.40077 -13.82866 -13.80711 -13.57092 -13.52315 -13.46300 -13.34315 -12.90320 -12.78116 -12.69823 -12.65897 -12.51102 -12.43445 -12.31348 -12.11964 -11.89020 -11.84543 -11.65918 -11.34761 -11.21347 -11.07601 -10.92283 -10.81155 -9.63656 -9.50681 -9.21775 -9.17367 -8.57047 -6.32395 0.96606 1.11540 1.33342 1.47059 1.49732 1.76294 2.02759 2.18756 2.78039 2.87475 3.17285 3.40929 3.60735 3.67283 3.70888 3.81358 4.01670 4.09090 4.16992 4.26082 4.29304 4.35469 4.41141 4.42226 4.53747 4.58520 4.61707 4.64650 4.70015 4.74202 4.80970 4.83420 4.89324 4.90054 4.96979 4.98997 5.05041 5.14705 5.18633 5.21175 5.37157 5.39096 5.54035 5.76351 5.80399 5.96565 6.02547 6.15845 6.20074 6.41020 6.54963 6.73057 6.90061 6.98608 7.09776 7.31330 8.38429 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.002775 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.883333 B =10086.395896 C =11163.133862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.033 3.967 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.257 1.257 6 H -0.269 1.269 7 C -0.480 4.480 8 H 0.066 0.934 9 C 0.093 3.907 10 C -0.191 4.191 11 C -0.118 4.118 12 C -0.239 4.239 13 C -0.093 4.093 14 C -0.188 4.188 15 C -0.058 4.058 16 C 0.529 3.471 17 O -0.579 6.579 18 N -0.627 5.627 19 C 0.093 3.907 20 C -0.106 4.106 21 C 0.069 3.931 22 H 0.058 0.942 23 N -0.510 5.510 24 C 0.036 3.964 25 C -0.147 4.147 26 C 0.095 3.905 27 H 0.077 0.923 28 O -0.582 6.582 29 C 0.032 3.968 30 C 0.117 3.883 31 H 0.285 0.715 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.057 0.943 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.397 0.603 47 H 0.051 0.949 48 H 0.068 0.932 49 H 0.043 0.957 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.551 -3.003 -9.435 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.180 4.180 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.182 1.182 6 H -0.194 1.194 7 C -0.510 4.510 8 H 0.084 0.916 9 C 0.091 3.909 10 C -0.210 4.210 11 C -0.137 4.137 12 C -0.258 4.258 13 C -0.111 4.111 14 C -0.190 4.190 15 C -0.098 4.098 16 C 0.320 3.680 17 O -0.458 6.458 18 N -0.362 5.362 19 C -0.029 4.029 20 C -0.144 4.144 21 C -0.041 4.041 22 H 0.076 0.924 23 N -0.236 5.236 24 C -0.091 4.091 25 C -0.185 4.185 26 C 0.036 3.964 27 H 0.095 0.905 28 O -0.390 6.390 29 C -0.096 4.096 30 C -0.007 4.007 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.127 0.873 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.076 0.924 44 H 0.118 0.882 45 H 0.099 0.901 46 H 0.247 0.753 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.062 0.938 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 22.535 -3.596 -8.624 24.395 hybrid contribution 0.247 1.830 0.574 1.933 sum 22.781 -1.766 -8.050 24.226 Atomic orbital electron populations 1.69871 1.08677 1.30002 1.37179 1.26673 0.95548 1.04150 0.91669 0.85278 0.79105 0.76936 0.79105 1.18844 1.18171 1.19435 1.19600 0.95494 0.91500 1.44433 0.91574 1.17761 0.91754 0.92817 0.88559 1.21392 0.99753 0.96913 1.02957 1.20974 0.99180 0.93396 1.00127 1.20746 1.00445 0.97163 1.07489 1.20741 0.95508 0.96430 0.98464 1.19596 0.99417 0.93914 1.06053 1.20205 0.88729 1.04338 0.96497 1.20962 0.83822 0.74473 0.88740 1.90659 1.86188 1.51115 1.17805 1.48551 1.04550 1.73877 1.09245 1.22336 0.97167 1.03402 0.79986 1.22673 0.92146 1.04117 0.95467 1.22867 0.88382 0.96802 0.96014 0.92427 1.64734 1.00921 1.55409 1.02510 1.23290 0.90112 1.00133 0.95599 1.23207 0.97543 1.03418 0.94357 1.22654 0.91114 0.93865 0.88797 0.90472 1.86535 1.25143 1.67253 1.60097 1.22843 0.94547 0.98912 0.93278 1.22027 0.83129 1.00751 0.94749 0.90416 0.88100 0.87533 0.86531 0.86616 0.87148 0.88544 0.89288 0.90474 0.87251 0.88571 0.88070 0.92425 0.88211 0.90051 0.75313 0.93098 0.91320 0.93837 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.87 10.80 21.82 0.24 -44.64 16 2 C 0.03 1.73 5.24 85.26 0.45 2.17 16 3 Si 0.97 39.88 29.58 68.60 2.03 41.91 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.48 -26.75 8.12 23.46 0.19 -26.56 16 8 H 0.07 3.64 6.70 -2.91 -0.02 3.62 16 9 C 0.09 5.29 5.56 -21.29 -0.12 5.17 16 10 C -0.19 -10.87 8.67 22.73 0.20 -10.67 16 11 C -0.12 -6.01 10.02 22.22 0.22 -5.79 16 12 C -0.24 -11.25 10.05 22.46 0.23 -11.03 16 13 C -0.09 -4.37 9.66 22.22 0.21 -4.15 16 14 C -0.19 -9.42 4.43 -19.41 -0.09 -9.51 16 15 C -0.06 -2.36 4.38 29.10 0.13 -2.23 16 16 C 0.53 22.32 7.48 87.66 0.66 22.97 16 17 O -0.58 -30.62 16.29 -3.04 -0.05 -30.67 16 18 N -0.63 -20.03 3.33 -811.85 -2.70 -22.73 16 19 C 0.09 1.95 6.49 86.73 0.56 2.52 16 20 C -0.11 -1.61 5.74 31.78 0.18 -1.43 16 21 C 0.07 1.42 2.42 46.30 0.11 1.53 16 22 H 0.06 1.24 7.97 -2.39 -0.02 1.22 16 23 N -0.51 -9.40 5.15 -849.81 -4.38 -13.77 16 24 C 0.04 0.42 5.85 86.65 0.51 0.92 16 25 C -0.15 -1.46 6.80 31.80 0.22 -1.25 16 26 C 0.10 1.35 4.35 31.47 0.14 1.49 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 O -0.58 -9.30 13.25 -148.98 -1.97 -11.27 16 29 C 0.03 0.65 6.09 86.45 0.53 1.17 16 30 C 0.12 3.45 6.13 86.85 0.53 3.98 16 31 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 32 H 0.10 6.00 6.15 -2.91 -0.02 5.98 16 33 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 34 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 35 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 36 H 0.11 3.58 8.06 -2.38 -0.02 3.56 16 37 H 0.10 3.85 7.08 -2.39 -0.02 3.84 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.10 0.94 8.04 -2.39 -0.02 0.92 16 43 H 0.06 0.60 8.02 -2.39 -0.02 0.58 16 44 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 46 H 0.40 2.45 9.12 -74.06 -0.68 1.78 16 47 H 0.05 1.05 7.66 -2.39 -0.02 1.03 16 48 H 0.07 1.71 7.97 -2.38 -0.02 1.70 16 49 H 0.04 1.52 8.04 -2.39 -0.02 1.50 16 50 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -76.74 399.56 -1.72 -78.46 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: 0.26 Total: 33.41 kcal Atomic # 6 Polarization: -35.54 SS G_CDS: 4.85 Total: -30.68 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -6.84 Total: -81.14 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -2.02 Total: -41.95 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -76.74 -1.72 -78.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861714205.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.094 kcal (2) G-P(sol) polarization free energy of solvation -76.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds