Wall clock time and date at job start Wed Apr 1 2020 03:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86800 * 120.00140 * 2 1 4 4 H 1.48499 * 109.47155 * 240.00634 * 3 2 1 5 5 H 1.48501 * 109.47012 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46957 * 120.00722 * 3 2 1 7 7 C 1.39942 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00399 * 163.61979 * 7 2 1 9 9 C 1.41397 * 119.99957 * 343.61694 * 7 2 1 10 10 C 1.40730 * 120.24484 * 334.08829 * 9 7 2 11 11 C 1.37604 * 119.74535 * 179.97438 * 10 9 7 12 12 C 1.38654 * 120.24758 * 359.97438 * 11 10 9 13 13 C 1.38617 * 120.50240 * 0.02562 * 12 11 10 14 14 C 1.37638 * 120.24631 * 359.73389 * 13 12 11 15 15 C 1.50702 * 120.12520 * 180.27743 * 14 13 12 16 16 C 1.50697 * 109.47490 * 265.23712 * 15 14 13 17 17 O 1.21278 * 119.99832 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99934 * 180.02562 * 16 15 14 19 19 C 1.47021 * 125.65010 * 0.02833 * 18 16 15 20 20 C 1.54321 * 107.27095 * 181.01895 * 19 18 16 21 21 C 1.55158 * 102.94188 * 22.19535 * 20 19 18 22 22 H 1.08998 * 111.00595 * 82.60640 * 21 20 19 23 23 N 1.46897 * 111.00321 * 206.42311 * 21 20 19 24 24 C 1.48538 * 111.00132 * 176.14805 * 23 21 20 25 25 C 1.54944 * 103.22855 * 159.72035 * 24 23 21 26 26 C 1.54598 * 102.92063 * 322.58675 * 25 24 23 27 27 H 1.09007 * 110.31022 * 263.04475 * 26 25 24 28 28 O 1.42897 * 110.39283 * 140.91733 * 26 25 24 29 29 C 1.47907 * 111.00161 * 293.54481 * 23 21 20 30 30 C 1.47427 * 125.64301 * 179.71814 * 18 16 15 31 31 H 0.97001 * 119.99753 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.12988 * 359.95138 * 10 9 7 33 33 H 1.07994 * 119.87447 * 179.97438 * 11 10 9 34 34 H 1.08001 * 119.75017 * 180.02562 * 12 11 10 35 35 H 1.07998 * 119.87253 * 180.02562 * 13 12 11 36 36 H 1.09001 * 109.47032 * 25.24475 * 15 14 13 37 37 H 1.09000 * 109.46821 * 145.23698 * 15 14 13 38 38 H 1.08999 * 109.87953 * 300.43695 * 19 18 16 39 39 H 1.09000 * 109.88310 * 61.60525 * 19 18 16 40 40 H 1.09001 * 110.72245 * 140.55502 * 20 19 18 41 41 H 1.08998 * 110.72571 * 263.64936 * 20 19 18 42 42 H 1.09000 * 110.66638 * 278.15139 * 24 23 21 43 43 H 1.08997 * 110.66618 * 41.28903 * 24 23 21 44 44 H 1.08996 * 110.72380 * 204.23192 * 25 24 23 45 45 H 1.09001 * 110.72094 * 80.94212 * 25 24 23 46 46 H 0.96698 * 113.99876 * 64.23760 * 28 26 25 47 47 H 1.08999 * 109.91305 * 333.50931 * 29 23 21 48 48 H 1.08993 * 109.91917 * 94.60484 * 29 23 21 49 49 H 1.09001 * 110.36636 * 274.74369 * 30 18 16 50 50 H 1.08995 * 110.36887 * 37.07112 * 30 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0959 1.6964 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0962 1.6962 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0551 -1.2309 -0.2643 9 6 1.3439 -2.4118 0.3443 10 6 0.2131 -2.3807 1.1814 11 6 -0.4255 -3.5545 1.5100 12 6 0.0409 -4.7645 1.0192 13 6 1.1539 -4.8070 0.1940 14 6 1.8054 -3.6449 -0.1518 15 6 3.0113 -3.6937 -1.0542 16 6 4.2641 -3.7275 -0.2173 17 8 4.1854 -3.7138 0.9929 18 7 5.4719 -3.7729 -0.8136 19 6 5.7111 -3.7935 -2.2641 20 6 7.2377 -3.8724 -2.4756 21 6 7.7445 -4.4624 -1.1330 22 1 7.6492 -5.5481 -1.1226 23 7 9.1312 -4.0557 -0.8692 24 6 9.5856 -4.5433 0.4582 25 6 11.1301 -4.5035 0.3409 26 6 11.3772 -4.9433 -1.1204 27 1 11.6074 -6.0080 -1.1613 28 8 12.4422 -4.1839 -1.6957 29 6 10.0559 -4.6537 -1.8566 30 6 6.7721 -3.8037 -0.1195 31 1 -0.4850 0.8401 0.0004 32 1 -0.1520 -1.4393 1.5647 33 1 -1.2933 -3.5331 2.1525 34 1 -0.4667 -5.6808 1.2820 35 1 1.5082 -5.7550 -0.1828 36 1 2.9647 -4.5885 -1.6749 37 1 3.0240 -2.8096 -1.6917 38 1 5.2299 -4.6656 -2.7068 39 1 5.3208 -2.8822 -2.7172 40 1 7.4784 -4.5380 -3.3045 41 1 7.6553 -2.8801 -2.6460 42 1 9.2427 -3.8778 1.2505 43 1 9.2392 -5.5619 0.6331 44 1 11.5880 -5.2055 1.0377 45 1 11.5036 -3.4932 0.5080 46 1 13.2999 -4.3259 -1.2721 47 1 9.6357 -5.5817 -2.2443 48 1 10.2288 -3.9543 -2.6745 49 1 7.0984 -2.7916 0.1199 50 1 6.7042 -4.4056 0.7867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861714206.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:42 Heat of formation + Delta-G solvation = -54.278194 kcal Electronic energy + Delta-G solvation = -30176.423654 eV Core-core repulsion = 26167.960584 eV Total energy + Delta-G solvation = -4008.463070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.21149 -39.14853 -37.71236 -36.83846 -35.66644 -33.57265 -32.18171 -31.45344 -29.78845 -29.42993 -29.20474 -27.80821 -26.33458 -24.93153 -23.30114 -22.11926 -21.34134 -20.88274 -20.38954 -19.92466 -18.56841 -18.02516 -17.10851 -16.97952 -16.62491 -15.58961 -15.35200 -15.15701 -14.75283 -14.48355 -14.36928 -14.25292 -14.07818 -13.58801 -13.49792 -13.44378 -12.96712 -12.82297 -12.55023 -12.41022 -12.28166 -12.10423 -11.90525 -11.69053 -11.51429 -11.36547 -11.17572 -11.11815 -11.05323 -10.96879 -10.93848 -10.90189 -10.63864 -10.39578 -10.35928 -9.43902 -9.32873 -9.14693 -9.10148 -8.77368 -8.29632 -7.26716 -7.24467 -6.68905 -4.29446 2.82880 2.97884 3.09841 3.14039 3.27613 3.32359 3.34942 3.70665 3.77845 3.98372 4.17813 4.22666 4.43786 4.58836 4.67301 4.70876 4.86598 4.91016 5.12407 5.15698 5.23972 5.29381 5.37008 5.40869 5.56463 5.59561 5.63806 5.68920 5.70742 5.81608 5.88579 5.90682 5.98077 6.07750 6.15310 6.32447 6.47685 6.49524 6.54611 6.59398 6.77183 6.85135 7.13716 7.22749 7.34158 7.46930 7.68670 7.90966 7.98841 8.12491 8.17472 8.36467 8.69402 8.85768 8.96709 9.06377 10.25316 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013930 B = 0.002630 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.542575 B =10645.269023 C =11783.350784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.077 3.923 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.456 4.456 8 H 0.073 0.927 9 C 0.129 3.871 10 C -0.159 4.159 11 C -0.107 4.107 12 C -0.240 4.240 13 C -0.081 4.081 14 C -0.182 4.182 15 C -0.064 4.064 16 C 0.532 3.468 17 O -0.519 6.519 18 N -0.632 5.632 19 C 0.104 3.896 20 C -0.122 4.122 21 C 0.059 3.941 22 H 0.060 0.940 23 N -0.502 5.502 24 C 0.033 3.967 25 C -0.157 4.157 26 C 0.094 3.906 27 H 0.062 0.938 28 O -0.560 6.560 29 C 0.043 3.957 30 C 0.119 3.881 31 H 0.280 0.720 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.378 0.622 47 H 0.054 0.946 48 H 0.094 0.906 49 H 0.073 0.927 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.197 -8.335 -5.478 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.091 0.909 9 C 0.127 3.873 10 C -0.178 4.178 11 C -0.125 4.125 12 C -0.260 4.260 13 C -0.099 4.099 14 C -0.184 4.184 15 C -0.103 4.103 16 C 0.323 3.677 17 O -0.392 6.392 18 N -0.370 5.370 19 C -0.019 4.019 20 C -0.160 4.160 21 C -0.050 4.050 22 H 0.077 0.923 23 N -0.227 5.227 24 C -0.094 4.094 25 C -0.195 4.195 26 C 0.034 3.966 27 H 0.080 0.920 28 O -0.366 6.366 29 C -0.084 4.084 30 C -0.004 4.004 31 H 0.091 0.909 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.073 0.927 48 H 0.112 0.888 49 H 0.092 0.908 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.344 -7.379 -5.202 21.347 hybrid contribution 0.755 -0.365 0.384 0.922 sum 20.099 -7.744 -4.818 22.071 Atomic orbital electron populations 1.69815 1.07452 1.29126 1.35745 1.25871 0.94692 1.01101 0.92332 0.86456 0.80222 0.80561 0.80027 1.19040 1.20345 1.18873 1.19435 0.97158 0.90978 1.40981 0.90874 1.17334 0.90759 0.91263 0.87955 1.21291 0.99006 0.96667 1.00882 1.20670 0.98650 0.93465 0.99754 1.20299 1.01551 0.96158 1.07962 1.20289 0.95947 0.95480 0.98190 1.19081 0.99407 0.94079 1.05850 1.20233 0.90107 1.02656 0.97345 1.21010 0.83015 0.74736 0.88986 1.90686 1.86027 1.47927 1.14605 1.48599 1.05374 1.76285 1.06729 1.21952 0.95573 1.02134 0.82285 1.22679 0.94336 1.02726 0.96250 1.23063 0.88041 0.97474 0.96451 0.92251 1.64785 1.00928 1.54937 1.02071 1.23216 0.94218 0.99363 0.92626 1.23254 0.96456 1.03142 0.96675 1.22649 0.87951 0.93952 0.92026 0.92003 1.86559 1.19636 1.69170 1.61195 1.22781 0.90350 0.99130 0.96175 1.22026 0.82381 1.01097 0.94921 0.90940 0.86539 0.89594 0.89690 0.89840 0.90759 0.88596 0.91510 0.90916 0.90427 0.89387 0.89204 0.93296 0.90705 0.89486 0.77450 0.92739 0.88814 0.90840 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.87 10.97 55.55 0.61 -20.26 16 2 C 0.08 1.98 5.16 -17.34 -0.09 1.89 16 3 Si 0.90 19.33 29.59 -169.99 -5.03 14.30 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.76 7.11 56.52 0.40 -5.35 16 7 C -0.46 -12.28 8.14 -37.74 -0.31 -12.58 16 8 H 0.07 1.94 6.69 -52.49 -0.35 1.58 16 9 C 0.13 3.54 5.56 -106.82 -0.59 2.94 16 10 C -0.16 -4.34 8.68 -38.87 -0.34 -4.68 16 11 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 12 C -0.24 -5.72 10.05 -39.29 -0.39 -6.11 16 13 C -0.08 -1.91 9.66 -39.66 -0.38 -2.29 16 14 C -0.18 -4.51 4.43 -103.91 -0.46 -4.97 16 15 C -0.06 -1.30 4.37 -29.04 -0.13 -1.43 16 16 C 0.53 10.96 7.48 -10.99 -0.08 10.88 16 17 O -0.52 -12.98 16.29 5.56 0.09 -12.89 16 18 N -0.63 -10.11 3.32 -170.38 -0.57 -10.67 16 19 C 0.10 1.24 6.48 -3.07 -0.02 1.22 16 20 C -0.12 -1.17 6.04 -24.90 -0.15 -1.32 16 21 C 0.06 0.62 2.38 -65.44 -0.16 0.47 16 22 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 23 N -0.50 -4.94 5.14 -219.79 -1.13 -6.07 16 24 C 0.03 0.29 5.96 -1.89 -0.01 0.28 16 25 C -0.16 -1.08 6.81 -24.87 -0.17 -1.25 16 26 C 0.09 0.67 4.35 -25.37 -0.11 0.56 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 O -0.56 -4.30 13.26 -35.23 -0.47 -4.77 16 29 C 0.04 0.37 5.97 -2.75 -0.02 0.35 16 30 C 0.12 1.67 5.89 -2.41 -0.01 1.66 16 31 H 0.28 6.71 8.30 -40.82 -0.34 6.38 16 32 H 0.12 3.25 6.22 -52.49 -0.33 2.93 16 33 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.08 1.79 8.06 -52.49 -0.42 1.36 16 35 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 37 H 0.10 1.94 7.06 -51.93 -0.37 1.57 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 43 H 0.05 0.40 8.02 -51.93 -0.42 -0.01 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 46 H 0.38 1.26 9.12 45.56 0.42 1.68 16 47 H 0.05 0.41 7.72 -51.93 -0.40 0.01 16 48 H 0.09 0.88 7.97 -51.93 -0.41 0.47 16 49 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16 LS Contribution 399.91 15.07 6.03 6.03 Total: -1.00 -32.97 399.91 -11.60 -44.58 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.32 Total: 7.21 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -3.82 Total: -17.45 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -1.09 Total: -37.01 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.38 Total: -17.66 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.97 -11.60 -44.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861714206.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.699 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds