Wall clock time and date at job start Wed Apr 1 2020 03:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86800 * 120.00140 * 2 1 4 4 H 1.48499 * 109.47155 * 240.00634 * 3 2 1 5 5 H 1.48501 * 109.47012 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46957 * 120.00722 * 3 2 1 7 7 C 1.39942 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00399 * 163.61979 * 7 2 1 9 9 C 1.41397 * 119.99957 * 343.61694 * 7 2 1 10 10 C 1.40730 * 120.24484 * 334.08829 * 9 7 2 11 11 C 1.37604 * 119.74535 * 179.97438 * 10 9 7 12 12 C 1.38654 * 120.24758 * 359.97438 * 11 10 9 13 13 C 1.38617 * 120.50240 * 0.02562 * 12 11 10 14 14 C 1.37638 * 120.24631 * 359.73389 * 13 12 11 15 15 C 1.50702 * 120.12520 * 180.27743 * 14 13 12 16 16 C 1.50697 * 109.47490 * 265.23712 * 15 14 13 17 17 O 1.21278 * 119.99832 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99934 * 180.02562 * 16 15 14 19 19 C 1.47021 * 125.65010 * 0.02833 * 18 16 15 20 20 C 1.54321 * 107.27095 * 181.01895 * 19 18 16 21 21 C 1.55158 * 102.94188 * 22.19535 * 20 19 18 22 22 H 1.08998 * 111.00595 * 82.60640 * 21 20 19 23 23 N 1.46897 * 111.00321 * 206.42311 * 21 20 19 24 24 C 1.48538 * 111.00132 * 176.14805 * 23 21 20 25 25 C 1.54944 * 103.22855 * 159.72035 * 24 23 21 26 26 C 1.54598 * 102.92063 * 322.58675 * 25 24 23 27 27 H 1.09007 * 110.31022 * 263.04475 * 26 25 24 28 28 O 1.42897 * 110.39283 * 140.91733 * 26 25 24 29 29 C 1.47907 * 111.00161 * 293.54481 * 23 21 20 30 30 C 1.47427 * 125.64301 * 179.71814 * 18 16 15 31 31 H 0.97001 * 119.99753 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.12988 * 359.95138 * 10 9 7 33 33 H 1.07994 * 119.87447 * 179.97438 * 11 10 9 34 34 H 1.08001 * 119.75017 * 180.02562 * 12 11 10 35 35 H 1.07998 * 119.87253 * 180.02562 * 13 12 11 36 36 H 1.09001 * 109.47032 * 25.24475 * 15 14 13 37 37 H 1.09000 * 109.46821 * 145.23698 * 15 14 13 38 38 H 1.08999 * 109.87953 * 300.43695 * 19 18 16 39 39 H 1.09000 * 109.88310 * 61.60525 * 19 18 16 40 40 H 1.09001 * 110.72245 * 140.55502 * 20 19 18 41 41 H 1.08998 * 110.72571 * 263.64936 * 20 19 18 42 42 H 1.09000 * 110.66638 * 278.15139 * 24 23 21 43 43 H 1.08997 * 110.66618 * 41.28903 * 24 23 21 44 44 H 1.08996 * 110.72380 * 204.23192 * 25 24 23 45 45 H 1.09001 * 110.72094 * 80.94212 * 25 24 23 46 46 H 0.96698 * 113.99876 * 64.23760 * 28 26 25 47 47 H 1.08999 * 109.91305 * 333.50931 * 29 23 21 48 48 H 1.08993 * 109.91917 * 94.60484 * 29 23 21 49 49 H 1.09001 * 110.36636 * 274.74369 * 30 18 16 50 50 H 1.08995 * 110.36887 * 37.07112 * 30 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0959 1.6964 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0962 1.6962 1.2124 7 6 2.0079 -1.2120 -0.0005 8 1 3.0551 -1.2309 -0.2643 9 6 1.3439 -2.4118 0.3443 10 6 0.2131 -2.3807 1.1814 11 6 -0.4255 -3.5545 1.5100 12 6 0.0409 -4.7645 1.0192 13 6 1.1539 -4.8070 0.1940 14 6 1.8054 -3.6449 -0.1518 15 6 3.0113 -3.6937 -1.0542 16 6 4.2641 -3.7275 -0.2173 17 8 4.1854 -3.7138 0.9929 18 7 5.4719 -3.7729 -0.8136 19 6 5.7111 -3.7935 -2.2641 20 6 7.2377 -3.8724 -2.4756 21 6 7.7445 -4.4624 -1.1330 22 1 7.6492 -5.5481 -1.1226 23 7 9.1312 -4.0557 -0.8692 24 6 9.5856 -4.5433 0.4582 25 6 11.1301 -4.5035 0.3409 26 6 11.3772 -4.9433 -1.1204 27 1 11.6074 -6.0080 -1.1613 28 8 12.4422 -4.1839 -1.6957 29 6 10.0559 -4.6537 -1.8566 30 6 6.7721 -3.8037 -0.1195 31 1 -0.4850 0.8401 0.0004 32 1 -0.1520 -1.4393 1.5647 33 1 -1.2933 -3.5331 2.1525 34 1 -0.4667 -5.6808 1.2820 35 1 1.5082 -5.7550 -0.1828 36 1 2.9647 -4.5885 -1.6749 37 1 3.0240 -2.8096 -1.6917 38 1 5.2299 -4.6656 -2.7068 39 1 5.3208 -2.8822 -2.7172 40 1 7.4784 -4.5380 -3.3045 41 1 7.6553 -2.8801 -2.6460 42 1 9.2427 -3.8778 1.2505 43 1 9.2392 -5.5619 0.6331 44 1 11.5880 -5.2055 1.0377 45 1 11.5036 -3.4932 0.5080 46 1 13.2999 -4.3259 -1.2721 47 1 9.6357 -5.5817 -2.2443 48 1 10.2288 -3.9543 -2.6745 49 1 7.0984 -2.7916 0.1199 50 1 6.7042 -4.4056 0.7867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861714206.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:41 Heat of formation + Delta-G solvation = -77.166846 kcal Electronic energy + Delta-G solvation = -30177.416181 eV Core-core repulsion = 26167.960584 eV Total energy + Delta-G solvation = -4009.455596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.29343 -40.27468 -39.25143 -38.14315 -36.48962 -35.51120 -33.62643 -32.75421 -31.35671 -30.69353 -30.06546 -28.95080 -27.78204 -26.77147 -24.43374 -22.88678 -22.83174 -22.16458 -21.52834 -21.17406 -19.97840 -19.05222 -18.57786 -18.07433 -17.83044 -17.25455 -16.62729 -16.41529 -16.13287 -15.73514 -15.58211 -15.35069 -15.08216 -14.99691 -14.80077 -14.38827 -14.35683 -13.99028 -13.76289 -13.71991 -13.50271 -13.35703 -13.25167 -12.94115 -12.87877 -12.76282 -12.68798 -12.49991 -12.49887 -12.16443 -12.12889 -11.84452 -11.83904 -11.67579 -11.33280 -11.22317 -11.04059 -10.91723 -10.80400 -9.62816 -9.47807 -9.23551 -9.17474 -8.60765 -6.30660 0.98209 1.12009 1.33793 1.43984 1.52664 1.76713 2.02827 2.18637 2.76750 2.89785 3.17670 3.43605 3.60831 3.68927 3.71802 3.80334 4.02328 4.09965 4.17085 4.25621 4.28470 4.36313 4.39603 4.40487 4.56584 4.59645 4.61408 4.65158 4.70036 4.75343 4.82130 4.83318 4.88174 4.93334 4.95553 4.97882 5.04891 5.13993 5.18204 5.20295 5.35824 5.39576 5.53847 5.76192 5.81983 5.98742 6.02678 6.15447 6.20431 6.41255 6.54718 6.72719 6.91018 6.98176 7.10006 7.31641 8.35660 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013930 B = 0.002630 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.542575 B =10645.269023 C =11783.350784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.038 3.962 3 Si 0.969 3.031 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.273 1.273 7 C -0.483 4.483 8 H 0.066 0.934 9 C 0.095 3.905 10 C -0.194 4.194 11 C -0.116 4.116 12 C -0.242 4.242 13 C -0.090 4.090 14 C -0.190 4.190 15 C -0.059 4.059 16 C 0.531 3.469 17 O -0.577 6.577 18 N -0.627 5.627 19 C 0.095 3.905 20 C -0.110 4.110 21 C 0.073 3.927 22 H 0.070 0.930 23 N -0.517 5.517 24 C 0.029 3.971 25 C -0.149 4.149 26 C 0.096 3.904 27 H 0.083 0.917 28 O -0.579 6.579 29 C 0.041 3.959 30 C 0.116 3.884 31 H 0.287 0.713 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.396 0.604 47 H 0.069 0.931 48 H 0.083 0.917 49 H 0.058 0.942 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.171 -9.925 -7.304 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.198 1.198 7 C -0.512 4.512 8 H 0.084 0.916 9 C 0.093 3.907 10 C -0.213 4.213 11 C -0.135 4.135 12 C -0.261 4.261 13 C -0.108 4.108 14 C -0.192 4.192 15 C -0.098 4.098 16 C 0.321 3.679 17 O -0.456 6.456 18 N -0.362 5.362 19 C -0.028 4.028 20 C -0.148 4.148 21 C -0.036 4.036 22 H 0.088 0.912 23 N -0.242 5.242 24 C -0.099 4.099 25 C -0.187 4.187 26 C 0.037 3.963 27 H 0.101 0.899 28 O -0.388 6.388 29 C -0.086 4.086 30 C -0.007 4.007 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.114 0.886 45 H 0.094 0.906 46 H 0.246 0.754 47 H 0.087 0.913 48 H 0.102 0.898 49 H 0.076 0.924 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 21.362 -8.983 -7.080 24.231 hybrid contribution 0.172 0.035 0.957 0.973 sum 21.534 -8.948 -6.123 24.109 Atomic orbital electron populations 1.69869 1.08697 1.30298 1.36222 1.26633 0.95445 1.04051 0.91572 0.85458 0.79035 0.76655 0.79849 1.17787 1.18761 1.19784 1.19545 0.96946 0.92065 1.42684 0.91556 1.17735 0.91415 0.92772 0.88753 1.21305 1.00512 0.96900 1.02606 1.20955 0.99189 0.93330 0.99979 1.20730 1.01498 0.96823 1.07063 1.20730 0.95704 0.96543 0.97868 1.19568 1.00469 0.93600 1.05585 1.20201 0.88624 1.04239 0.96753 1.20923 0.84348 0.74433 0.88173 1.90655 1.87060 1.51039 1.16813 1.48545 1.04728 1.74010 1.08933 1.22305 0.97651 1.03303 0.79506 1.22663 0.92236 1.03266 0.96660 1.22906 0.87781 0.97581 0.95342 0.91175 1.64732 1.00727 1.55773 1.03016 1.23250 0.95634 0.99224 0.91780 1.23211 0.94969 1.03152 0.97412 1.22667 0.87346 0.94931 0.91400 0.89938 1.86513 1.20841 1.69600 1.61826 1.22822 0.90852 0.99356 0.95577 1.22087 0.82486 1.00455 0.95652 0.90286 0.88497 0.87540 0.86515 0.86538 0.87113 0.88816 0.89150 0.90834 0.87223 0.89859 0.90712 0.92678 0.88649 0.90587 0.75401 0.91264 0.89830 0.92387 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.68 10.97 21.83 0.24 -44.44 16 2 C 0.04 1.98 5.16 85.26 0.44 2.42 16 3 Si 0.97 40.48 29.59 68.60 2.03 42.51 16 4 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.48 -27.01 8.14 23.46 0.19 -26.82 16 8 H 0.07 3.66 6.69 -2.91 -0.02 3.64 16 9 C 0.10 5.41 5.56 -21.29 -0.12 5.29 16 10 C -0.19 -11.00 8.68 22.73 0.20 -10.80 16 11 C -0.12 -5.85 10.02 22.22 0.22 -5.63 16 12 C -0.24 -11.25 10.05 22.46 0.23 -11.02 16 13 C -0.09 -4.17 9.66 22.22 0.21 -3.96 16 14 C -0.19 -9.48 4.43 -19.40 -0.09 -9.57 16 15 C -0.06 -2.36 4.37 29.10 0.13 -2.24 16 16 C 0.53 22.00 7.48 87.66 0.66 22.66 16 17 O -0.58 -29.86 16.29 -3.02 -0.05 -29.91 16 18 N -0.63 -19.69 3.32 -811.36 -2.70 -22.39 16 19 C 0.09 2.03 6.48 86.73 0.56 2.59 16 20 C -0.11 -1.82 6.04 31.78 0.19 -1.63 16 21 C 0.07 1.41 2.38 46.39 0.11 1.52 16 22 H 0.07 1.23 8.06 -2.39 -0.02 1.21 16 23 N -0.52 -9.40 5.14 -849.29 -4.37 -13.77 16 24 C 0.03 0.47 5.96 86.65 0.52 0.98 16 25 C -0.15 -1.79 6.81 31.80 0.22 -1.57 16 26 C 0.10 1.12 4.35 31.48 0.14 1.26 16 27 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 28 O -0.58 -7.62 13.26 -148.98 -1.98 -9.60 16 29 C 0.04 0.60 5.97 86.45 0.52 1.11 16 30 C 0.12 3.28 5.89 86.93 0.51 3.79 16 31 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 32 H 0.10 5.74 6.22 -2.91 -0.02 5.72 16 33 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 34 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 35 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 36 H 0.11 3.54 8.05 -2.39 -0.02 3.52 16 37 H 0.09 3.79 7.06 -2.39 -0.02 3.78 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 40 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 1.42 8.09 -2.39 -0.02 1.40 16 43 H 0.05 0.83 8.02 -2.39 -0.02 0.81 16 44 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 46 H 0.40 1.75 9.12 -74.06 -0.68 1.07 16 47 H 0.07 0.79 7.72 -2.39 -0.02 0.77 16 48 H 0.08 1.39 7.97 -2.39 -0.02 1.37 16 49 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.06 1.76 8.03 -2.39 -0.02 1.74 16 Total: -1.00 -75.18 399.91 -1.73 -76.90 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.26 Total: 32.30 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 4.83 Total: -31.60 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -6.83 Total: -80.60 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -2.02 Total: -39.51 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -75.18 -1.73 -76.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861714206.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.262 kcal (2) G-P(sol) polarization free energy of solvation -75.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds