Wall clock time and date at job start Wed Apr 1 2020 03:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 119.99894 * 2 1 4 4 H 1.48494 * 109.47137 * 239.99923 * 3 2 1 5 5 H 1.48498 * 109.46662 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46778 * 119.99769 * 3 2 1 7 7 C 1.37874 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99971 * 173.00286 * 7 2 1 9 9 C 1.50701 * 119.99839 * 352.99875 * 7 2 1 10 10 C 1.53000 * 115.55078 * 295.91553 * 9 7 2 11 11 N 1.46490 * 109.47085 * 275.45926 * 10 9 7 12 12 C 1.34784 * 119.99918 * 184.99934 * 11 10 9 13 13 O 1.21589 * 120.00013 * 5.15524 * 12 11 10 14 14 N 1.34775 * 120.00286 * 185.15831 * 12 11 10 15 15 C 1.46931 * 120.62612 * 354.80362 * 14 12 11 16 16 C 1.53191 * 108.76992 * 233.60515 * 15 14 12 17 17 C 1.53041 * 109.31704 * 305.36740 * 16 15 14 18 18 C 1.53041 * 109.53678 * 61.36584 * 17 16 15 19 19 O 1.42896 * 109.49643 * 58.62139 * 18 17 16 20 20 C 1.50699 * 109.49671 * 178.68350 * 18 17 16 21 21 C 1.38231 * 119.99999 * 209.93621 * 20 18 17 22 22 C 1.38234 * 120.00010 * 179.97438 * 21 20 18 23 23 C 1.38235 * 119.99859 * 359.97438 * 22 21 20 24 24 C 1.38232 * 120.00407 * 0.07417 * 23 22 21 25 25 C 1.38239 * 119.99763 * 29.95662 * 20 18 17 26 26 C 1.46926 * 120.60721 * 174.82104 * 14 12 11 27 27 C 1.53002 * 117.51709 * 81.62100 * 9 7 2 28 28 C 1.53001 * 60.00050 * 107.47974 * 27 9 7 29 29 H 0.96996 * 120.00239 * 5.00834 * 1 2 3 30 30 H 1.09005 * 109.46943 * 155.45870 * 10 9 7 31 31 H 1.09003 * 109.46725 * 35.46243 * 10 9 7 32 32 H 0.97004 * 120.00925 * 4.99788 * 11 10 9 33 33 H 1.09003 * 109.58538 * 113.82153 * 15 14 12 34 34 H 1.08999 * 109.70722 * 353.46574 * 15 14 12 35 35 H 1.09003 * 109.49451 * 185.41228 * 16 15 14 36 36 H 1.08996 * 109.49826 * 65.32463 * 16 15 14 37 37 H 1.09004 * 109.45958 * 301.34312 * 17 16 15 38 38 H 1.09000 * 109.44970 * 181.38201 * 17 16 15 39 39 H 0.96699 * 113.99900 * 180.02562 * 19 18 17 40 40 H 1.07996 * 120.00163 * 359.97438 * 21 20 18 41 41 H 1.07999 * 120.00104 * 179.71934 * 22 21 20 42 42 H 1.08002 * 120.00053 * 179.97438 * 23 22 21 43 43 H 1.07996 * 120.00442 * 179.97438 * 24 23 22 44 44 H 1.07994 * 120.00450 * 359.97438 * 25 20 18 45 45 H 1.09006 * 109.61652 * 6.62348 * 26 14 12 46 46 H 1.09004 * 109.56359 * 246.19451 * 26 14 12 47 47 H 1.08997 * 117.49544 * 214.97131 * 27 9 7 48 48 H 1.08999 * 117.49872 * 359.97438 * 27 9 7 49 49 H 1.08997 * 117.50014 * 252.50955 * 28 27 9 50 50 H 1.09002 * 117.49625 * 107.48969 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0785 -1.1973 -0.1145 9 6 1.2595 -2.4943 0.1580 10 6 0.5438 -2.6859 1.4966 11 7 1.4884 -3.2134 2.4842 12 6 1.0560 -3.5573 3.7137 13 8 -0.1312 -3.5188 3.9734 14 7 1.9395 -3.9439 4.6551 15 6 3.3623 -4.1048 4.3253 16 6 3.8107 -5.5073 4.7483 17 6 3.4803 -5.7199 6.2274 18 6 1.9677 -5.6136 6.4343 19 8 1.3062 -6.5898 5.6273 20 6 1.6404 -5.8551 7.8854 21 6 0.4262 -6.4151 8.2361 22 6 0.1262 -6.6370 9.5671 23 6 1.0406 -6.2995 10.5473 24 6 2.2544 -5.7386 10.1967 25 6 2.5542 -5.5162 8.8657 26 6 1.4977 -4.2126 6.0303 27 6 0.5977 -3.0863 -1.0881 28 6 1.8558 -3.7359 -0.5083 29 1 -0.4850 0.8368 -0.0733 30 1 -0.2803 -3.3881 1.3708 31 1 0.1551 -1.7275 1.8411 32 1 2.4251 -3.3152 2.2536 33 1 3.9481 -3.3571 4.8600 34 1 3.5068 -3.9831 3.2518 35 1 4.8858 -5.6063 4.5977 36 1 3.2888 -6.2525 4.1481 37 1 3.9830 -4.9591 6.8247 38 1 3.8207 -6.7080 6.5369 39 1 0.3427 -6.5795 5.7083 40 1 -0.2880 -6.6791 7.4703 41 1 -0.8243 -7.0704 9.8414 42 1 0.8060 -6.4726 11.5873 43 1 2.9686 -5.4745 10.9626 44 1 3.5028 -5.0787 8.5917 45 1 0.4099 -4.1633 6.0815 46 1 1.9311 -3.4734 6.7040 47 1 -0.3476 -3.6121 -0.9541 48 1 0.7008 -2.5350 -2.0227 49 1 2.7867 -3.6121 -1.0615 50 1 1.7381 -4.6892 0.0070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875554793.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:43 Heat of formation + Delta-G solvation = -20.022815 kcal Electronic energy + Delta-G solvation = -30789.295499 eV Core-core repulsion = 26782.317854 eV Total energy + Delta-G solvation = -4006.977645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.74533 -39.39474 -37.80168 -36.66316 -35.46591 -33.30534 -32.61606 -32.04135 -31.74650 -31.06193 -29.03699 -26.55428 -25.51517 -24.57822 -23.71457 -22.86557 -21.78021 -21.24001 -20.30543 -19.36249 -19.28720 -18.11778 -17.40358 -16.55315 -16.01196 -15.76448 -15.55124 -15.48300 -14.80401 -14.59855 -14.41455 -14.36078 -14.06964 -13.91815 -13.64956 -13.59251 -13.24181 -13.06185 -12.88412 -12.65655 -12.54728 -12.04495 -11.81195 -11.62670 -11.50021 -11.37224 -11.16103 -11.01953 -10.96176 -10.89572 -10.65358 -10.53400 -10.29380 -10.26234 -9.68251 -9.42329 -9.18603 -9.06033 -9.02403 -8.59525 -8.45297 -8.20270 -7.89189 -6.07090 -4.14052 1.04721 1.13456 3.02828 3.27567 3.33929 3.34824 3.48763 3.76197 4.12647 4.29143 4.35690 4.40287 4.50297 4.69271 4.75682 4.79520 4.85618 4.93644 5.02821 5.14675 5.23181 5.24306 5.35893 5.42221 5.48716 5.63212 5.63555 5.68951 5.72291 5.74488 5.81585 5.93453 6.03488 6.18633 6.22764 6.25179 6.33253 6.33813 6.49819 6.63853 6.65445 6.71061 6.72425 6.92060 7.06061 7.34066 7.36669 7.51364 7.53547 7.57377 7.85339 8.35933 8.59816 8.85336 9.20309 9.50647 11.00565 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017770 B = 0.002560 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.341409 B =10933.164983 C =11156.266091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.180 3.820 11 N -0.725 5.725 12 C 0.705 3.295 13 O -0.601 6.601 14 N -0.627 5.627 15 C 0.111 3.889 16 C -0.131 4.131 17 C -0.100 4.100 18 C 0.162 3.838 19 O -0.542 6.542 20 C -0.105 4.105 21 C -0.109 4.109 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.120 4.120 25 C -0.111 4.111 26 C 0.114 3.886 27 C -0.166 4.166 28 C -0.208 4.208 29 H 0.263 0.737 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.393 0.607 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.376 0.624 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.096 0.904 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.631 -12.821 18.370 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.132 4.132 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.035 3.965 10 C 0.057 3.943 11 N -0.379 5.379 12 C 0.407 3.593 13 O -0.481 6.481 14 N -0.365 5.365 15 C -0.013 4.013 16 C -0.170 4.170 17 C -0.138 4.138 18 C 0.119 3.881 19 O -0.348 6.348 20 C -0.106 4.106 21 C -0.127 4.127 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.138 4.138 25 C -0.129 4.129 26 C -0.010 4.010 27 C -0.204 4.204 28 C -0.246 4.246 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.228 0.772 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.224 0.776 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.144 0.856 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.095 0.905 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.169 -12.734 18.386 23.201 hybrid contribution 0.271 0.997 0.047 1.034 sum 6.440 -11.737 18.433 22.782 Atomic orbital electron populations 1.69945 1.05886 1.27133 1.48041 1.24984 0.94810 0.98964 0.94403 0.86678 0.79657 0.83164 0.78607 1.20285 1.21245 1.20171 1.20392 0.92963 0.88749 1.51633 0.92203 1.19072 0.97443 0.91318 0.88652 1.20890 0.88974 0.97716 0.86698 1.45466 1.13031 1.67895 1.11510 1.15901 0.84605 0.78040 0.80794 1.90848 1.14664 1.61949 1.80640 1.47033 1.07322 1.72935 1.09212 1.21619 0.81717 0.96618 1.01338 1.21867 1.01202 0.97697 0.96218 1.21548 0.92093 1.02664 0.97479 1.20374 0.93945 0.88574 0.85181 1.86565 1.23756 1.57061 1.67457 1.20464 0.94926 0.99425 0.95760 1.20940 0.96281 0.98946 0.96515 1.21131 0.99515 1.00022 0.92815 1.21179 0.94270 0.99222 0.99378 1.21157 0.97104 0.99372 0.96128 1.21091 0.99282 0.99979 0.92546 1.21965 1.02093 0.94503 0.82479 1.22720 0.93749 1.03730 1.00240 1.22875 0.97559 0.97081 1.07038 0.92691 0.94357 0.90318 0.77163 0.91644 0.89830 0.90710 0.90298 0.90388 0.90914 0.77572 0.86011 0.85952 0.86148 0.85995 0.85623 0.88550 0.91319 0.91621 0.90022 0.90450 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.49 12.46 55.43 0.69 -23.80 16 2 C 0.07 1.94 5.23 -17.82 -0.09 1.85 16 3 Si 0.89 20.69 29.55 -169.99 -5.02 15.67 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.50 -13.02 8.84 -34.44 -0.30 -13.32 16 8 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 9 C 0.04 0.86 1.34 -155.66 -0.21 0.65 16 10 C 0.18 4.29 5.51 -4.05 -0.02 4.26 16 11 N -0.72 -14.63 5.37 -65.23 -0.35 -14.98 16 12 C 0.71 14.02 8.29 -86.91 -0.72 13.30 16 13 O -0.60 -14.07 15.74 5.29 0.08 -13.99 16 14 N -0.63 -9.51 2.91 -178.49 -0.52 -10.04 16 15 C 0.11 1.33 6.39 -3.71 -0.02 1.31 16 16 C -0.13 -1.34 5.94 -26.61 -0.16 -1.50 16 17 C -0.10 -0.95 4.18 -26.69 -0.11 -1.07 16 18 C 0.16 1.76 0.86 -91.65 -0.08 1.68 16 19 O -0.54 -6.71 11.91 -35.23 -0.42 -7.13 16 20 C -0.10 -1.05 4.84 -104.62 -0.51 -1.55 16 21 C -0.11 -1.04 9.32 -39.59 -0.37 -1.41 16 22 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 23 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 24 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 25 C -0.11 -0.98 9.14 -39.58 -0.36 -1.34 16 26 C 0.11 1.50 5.35 -3.71 -0.02 1.48 16 27 C -0.17 -3.78 9.88 -26.73 -0.26 -4.05 16 28 C -0.21 -4.30 9.77 -26.73 -0.26 -4.56 16 29 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 30 H 0.04 0.93 7.86 -51.93 -0.41 0.53 16 31 H 0.08 2.15 7.13 -51.93 -0.37 1.78 16 32 H 0.39 7.13 5.90 -40.82 -0.24 6.89 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.03 5.65 -51.93 -0.29 0.74 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.97 7.61 -51.93 -0.40 0.57 16 37 H 0.08 0.61 6.59 -51.93 -0.34 0.27 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.38 4.01 7.33 45.56 0.33 4.34 16 40 H 0.12 1.03 6.49 -52.49 -0.34 0.69 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.13 0.91 6.20 -52.49 -0.33 0.58 16 45 H 0.10 1.44 7.00 -51.93 -0.36 1.08 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 1.44 8.05 -51.93 -0.42 1.02 16 48 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 49 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 50 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 397.41 15.07 5.99 5.99 Total: -1.00 -31.73 397.41 -11.19 -42.92 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -6.94 Total: 13.76 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -4.70 Total: -8.41 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.18 Total: -48.82 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.34 Total: -21.12 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.73 -11.19 -42.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875554793.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.894 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds