Wall clock time and date at job start Wed Apr 1 2020 03:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48499 * 109.46776 * 270.00254 * 3 2 1 5 5 H 1.48502 * 109.47042 * 30.00036 * 3 2 1 6 6 H 1.48498 * 109.46972 * 149.99939 * 3 2 1 7 7 C 1.39945 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99970 * 163.70778 * 7 2 1 9 9 C 1.41395 * 119.99944 * 343.71366 * 7 2 1 10 10 C 1.40734 * 120.24683 * 334.18905 * 9 7 2 11 11 C 1.37600 * 119.74461 * 180.28232 * 10 9 7 12 12 C 1.38655 * 120.24992 * 359.69875 * 11 10 9 13 13 C 1.38613 * 120.50130 * 0.02562 * 12 11 10 14 14 C 1.37638 * 120.24748 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.12677 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47227 * 264.99562 * 15 14 13 17 17 O 1.21277 * 119.99750 * 0.02562 * 16 15 14 18 18 N 1.34897 * 120.00139 * 179.97438 * 16 15 14 19 19 C 1.47713 * 121.66387 * 179.97438 * 18 16 15 20 20 C 1.52877 * 109.40497 * 69.59932 * 19 18 16 21 21 C 1.53049 * 109.58959 * 132.89503 * 20 19 18 22 22 C 1.52976 * 109.50640 * 216.67379 * 21 20 19 23 23 C 1.53019 * 109.60756 * 91.28820 * 22 21 20 24 24 N 1.47653 * 108.80332 * 296.17563 * 23 22 21 25 25 C 1.36065 * 116.91675 * 104.55847 * 24 23 22 26 26 O 1.21265 * 120.84876 * 9.94534 * 25 24 23 27 27 C 1.50759 * 118.89771 * 189.75577 * 25 24 23 28 28 C 1.47763 * 121.55512 * 0.65372 * 18 16 15 29 29 H 0.96997 * 119.99601 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.12668 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.87264 * 179.72527 * 11 10 9 32 32 H 1.08003 * 119.74983 * 180.02562 * 12 11 10 33 33 H 1.08002 * 119.87781 * 179.97438 * 13 12 11 34 34 H 1.09001 * 109.47293 * 144.99724 * 15 14 13 35 35 H 1.08998 * 109.47613 * 24.99759 * 15 14 13 36 36 H 1.09162 * 109.42969 * 309.68793 * 19 18 16 37 37 H 1.09020 * 109.57719 * 189.94399 * 19 18 16 38 38 H 1.08897 * 109.95457 * 12.64029 * 20 19 18 39 39 H 1.09153 * 109.37486 * 252.58718 * 20 19 18 40 40 H 1.09050 * 109.35652 * 96.74071 * 21 20 19 41 41 H 1.08924 * 109.62725 * 336.85578 * 21 20 19 42 42 H 1.09017 * 109.47936 * 211.33616 * 22 21 20 43 43 H 1.09012 * 109.51242 * 331.27095 * 22 21 20 44 44 H 1.08854 * 109.68938 * 56.56365 * 23 22 21 45 45 H 1.09111 * 109.41691 * 176.65817 * 23 22 21 46 46 H 0.97113 * 121.41043 * 285.69634 * 24 23 22 47 47 H 1.08920 * 109.50795 * 0.15482 * 27 25 24 48 48 H 1.09112 * 109.22141 * 240.52478 * 27 25 24 49 49 H 1.09108 * 109.44906 * 32.25863 * 28 18 16 50 50 H 1.09063 * 109.57661 * 152.09649 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2120 0.0005 8 1 3.0554 -1.2309 -0.2618 9 6 1.3435 -2.4118 0.3445 10 6 0.2101 -2.3805 1.1782 11 6 -0.4251 -3.5549 1.5111 12 6 0.0438 -4.7652 1.0233 13 6 1.1557 -4.8073 0.1968 14 6 1.8069 -3.6451 -0.1492 15 6 3.0152 -3.6941 -1.0485 16 6 4.2660 -3.7191 -0.2083 17 8 4.1842 -3.6997 1.0016 18 7 5.4765 -3.7643 -0.8018 19 6 6.7259 -3.7895 -0.0142 20 6 6.8475 -5.1344 0.7023 21 6 8.2573 -5.6960 0.5038 22 6 8.1849 -7.2165 0.3522 23 6 8.0512 -7.5791 -1.1284 24 7 6.7721 -7.0439 -1.6359 25 6 6.8365 -5.9320 -2.4176 26 8 7.9014 -5.5190 -2.8248 27 6 5.5577 -5.2186 -2.7763 28 6 5.6165 -3.7759 -2.2728 29 1 -0.4849 0.8401 0.0004 30 1 -0.1572 -1.4388 1.5586 31 1 -1.2924 -3.5337 2.1543 32 1 -0.4613 -5.6820 1.2894 33 1 1.5125 -5.7557 -0.1771 34 1 3.0263 -2.8132 -1.6904 35 1 2.9734 -4.5922 -1.6647 36 1 6.7064 -2.9850 0.7234 37 1 7.5790 -3.6475 -0.6779 38 1 6.1189 -5.8369 0.3004 39 1 6.6637 -4.9943 1.7691 40 1 8.8712 -5.4461 1.3698 41 1 8.7015 -5.2617 -0.3909 42 1 9.0928 -7.6657 0.7552 43 1 7.3205 -7.5960 0.8973 44 1 8.8819 -7.1516 -1.6871 45 1 8.0596 -8.6647 -1.2381 46 1 5.9239 -7.4578 -1.4071 47 1 4.7133 -5.7350 -2.3217 48 1 5.4384 -5.2186 -3.8608 49 1 4.8046 -3.2001 -2.7196 50 1 6.5714 -3.3295 -2.5525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889429066.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:52 Heat of formation + Delta-G solvation = -61.207174 kcal Electronic energy + Delta-G solvation = -31660.150613 eV Core-core repulsion = 27651.387080 eV Total energy + Delta-G solvation = -4008.763533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.33770 -39.09571 -37.41077 -36.47269 -35.51426 -33.81280 -33.60524 -31.74525 -30.69500 -30.14522 -29.43291 -27.11656 -25.44192 -24.72330 -24.17494 -22.54221 -21.03172 -20.91495 -20.36842 -19.90608 -18.42859 -17.37764 -17.15467 -16.63802 -16.42974 -15.71799 -15.57635 -15.33752 -14.88649 -14.55992 -14.41601 -13.97626 -13.83846 -13.61181 -13.55099 -13.11004 -12.91232 -12.75463 -12.57575 -12.51091 -12.37221 -11.82956 -11.73918 -11.58671 -11.51940 -11.37992 -11.19201 -11.08518 -11.00650 -10.94869 -10.88235 -10.68412 -10.52757 -10.38184 -9.91671 -9.47526 -9.35972 -9.14412 -9.10358 -9.07999 -8.38923 -7.30147 -7.27598 -6.72199 -4.32773 2.47489 2.79470 2.95898 3.08093 3.11855 3.13582 3.28174 3.32762 3.36849 3.95397 4.49622 4.65911 4.69585 4.81375 4.84180 4.85535 5.04806 5.15592 5.17720 5.33746 5.39213 5.48241 5.51270 5.58207 5.69047 5.70481 5.75961 5.80623 5.84053 5.92924 6.01325 6.03642 6.13154 6.20714 6.27144 6.31907 6.41428 6.43773 6.51161 6.77464 6.84137 7.10209 7.30628 7.35966 7.43498 7.64690 7.82238 7.94223 8.06433 8.08929 8.14216 8.32856 8.66304 8.85512 8.93463 9.03102 10.21845 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.003521 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.436993 B = 7950.902090 C = 8825.522003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.078 3.922 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.073 0.927 9 C 0.130 3.870 10 C -0.159 4.159 11 C -0.107 4.107 12 C -0.240 4.240 13 C -0.081 4.081 14 C -0.181 4.181 15 C -0.068 4.068 16 C 0.521 3.479 17 O -0.513 6.513 18 N -0.631 5.631 19 C 0.116 3.884 20 C -0.131 4.131 21 C -0.122 4.122 22 C -0.137 4.137 23 C 0.106 3.894 24 N -0.735 5.735 25 C 0.528 3.472 26 O -0.542 6.542 27 C -0.165 4.165 28 C 0.120 3.880 29 H 0.279 0.721 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.407 0.593 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.093 0.907 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.601 -10.729 -5.160 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.485 4.485 8 H 0.091 0.909 9 C 0.127 3.873 10 C -0.178 4.178 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.099 4.099 14 C -0.183 4.183 15 C -0.108 4.108 16 C 0.311 3.689 17 O -0.386 6.386 18 N -0.368 5.368 19 C -0.006 4.006 20 C -0.169 4.169 21 C -0.160 4.160 22 C -0.176 4.176 23 C -0.018 4.018 24 N -0.389 5.389 25 C 0.316 3.684 26 O -0.419 6.419 27 C -0.206 4.206 28 C -0.004 4.004 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.242 0.758 47 H 0.105 0.895 48 H 0.125 0.875 49 H 0.111 0.889 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.057 -10.241 -4.748 17.260 hybrid contribution -0.125 0.499 0.184 0.546 sum 12.932 -9.742 -4.564 16.822 Atomic orbital electron populations 1.69821 1.07463 1.29044 1.35763 1.25867 0.94673 1.01099 0.92333 0.86429 0.80847 0.81034 0.79163 1.19505 1.20091 1.18550 1.19457 0.97116 0.90988 1.40982 0.90851 1.17325 0.90717 0.91271 0.87949 1.21299 0.99005 0.96657 1.00872 1.20671 0.98672 0.93481 0.99756 1.20289 1.01615 0.96105 1.07919 1.20259 0.95992 0.95400 0.98275 1.19066 0.99361 0.94018 1.05887 1.20307 0.90577 1.02431 0.97440 1.21177 0.83744 0.74838 0.89175 1.90682 1.86183 1.47062 1.14669 1.48933 1.05893 1.76092 1.05889 1.21832 0.85951 0.97560 0.95281 1.22094 0.96559 0.96977 1.01302 1.21778 0.97194 0.95018 1.01975 1.22056 1.02207 0.96876 0.96439 1.21761 0.87543 0.98238 0.94272 1.46608 1.09757 1.30249 1.52303 1.20903 0.91063 0.79766 0.76665 1.90667 1.31999 1.65831 1.53403 1.22289 0.96296 0.98238 1.03786 1.21678 1.04219 0.93721 0.80817 0.90985 0.86562 0.89645 0.89758 0.89948 0.88689 0.90906 0.91547 0.90499 0.90994 0.91671 0.92316 0.91251 0.91234 0.91528 0.88919 0.91407 0.75754 0.89476 0.87471 0.88861 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.44 10.95 55.55 0.61 -19.83 16 2 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 3 Si 0.90 18.89 29.59 -169.99 -5.03 13.86 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.46 -11.91 8.14 -37.74 -0.31 -12.22 16 8 H 0.07 1.88 6.67 -52.49 -0.35 1.53 16 9 C 0.13 3.43 5.56 -106.82 -0.59 2.84 16 10 C -0.16 -4.23 8.69 -38.87 -0.34 -4.57 16 11 C -0.11 -2.60 10.02 -39.66 -0.40 -3.00 16 12 C -0.24 -5.50 10.05 -39.29 -0.39 -5.90 16 13 C -0.08 -1.82 9.66 -39.66 -0.38 -2.20 16 14 C -0.18 -4.26 4.43 -103.91 -0.46 -4.72 16 15 C -0.07 -1.27 3.86 -29.03 -0.11 -1.39 16 16 C 0.52 9.81 7.13 -10.93 -0.08 9.73 16 17 O -0.51 -11.97 15.79 5.56 0.09 -11.88 16 18 N -0.63 -9.22 2.44 -171.62 -0.42 -9.64 16 19 C 0.12 1.61 5.18 -3.44 -0.02 1.60 16 20 C -0.13 -1.67 4.37 -26.77 -0.12 -1.79 16 21 C -0.12 -1.26 5.23 -26.72 -0.14 -1.40 16 22 C -0.14 -1.15 5.75 -26.73 -0.15 -1.30 16 23 C 0.11 0.87 6.31 -3.40 -0.02 0.85 16 24 N -0.73 -6.48 3.90 -59.15 -0.23 -6.71 16 25 C 0.53 5.71 5.26 -10.37 -0.05 5.66 16 26 O -0.54 -7.46 15.43 5.57 0.09 -7.37 16 27 C -0.16 -1.56 6.05 -27.90 -0.17 -1.73 16 28 C 0.12 1.36 5.36 -3.39 -0.02 1.34 16 29 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 30 H 0.12 3.19 6.20 -52.49 -0.33 2.86 16 31 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 32 H 0.08 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.08 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.10 1.78 6.43 -51.93 -0.33 1.44 16 35 H 0.07 1.11 7.23 -51.93 -0.38 0.74 16 36 H 0.07 1.04 8.13 -51.84 -0.42 0.61 16 37 H 0.08 0.97 6.51 -51.92 -0.34 0.64 16 38 H 0.07 0.95 6.02 -51.99 -0.31 0.63 16 39 H 0.06 0.94 8.15 -51.84 -0.42 0.52 16 40 H 0.06 0.57 8.15 -51.90 -0.42 0.15 16 41 H 0.07 0.79 6.04 -51.97 -0.31 0.48 16 42 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 43 H 0.07 0.58 7.70 -51.92 -0.40 0.18 16 44 H 0.09 0.91 6.76 -52.01 -0.35 0.56 16 45 H 0.07 0.43 8.15 -51.87 -0.42 0.01 16 46 H 0.41 2.98 8.74 -40.78 -0.36 2.62 16 47 H 0.09 0.78 7.11 -51.97 -0.37 0.41 16 48 H 0.11 0.82 8.15 -51.87 -0.42 0.40 16 49 H 0.09 1.00 6.76 -51.87 -0.35 0.65 16 50 H 0.09 0.98 7.31 -51.89 -0.38 0.60 16 LS Contribution 386.47 15.07 5.82 5.82 Total: -1.00 -32.01 386.47 -10.42 -42.42 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -7.50 Total: 9.67 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -3.85 Total: -16.34 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.04 Total: -36.19 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.17 Total: -19.25 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.01 -10.42 -42.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889429066.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.783 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds