Wall clock time and date at job start Wed Apr 1 2020 03:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48499 * 109.46776 * 270.00254 * 3 2 1 5 5 H 1.48502 * 109.47042 * 30.00036 * 3 2 1 6 6 H 1.48498 * 109.46972 * 149.99939 * 3 2 1 7 7 C 1.39945 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99970 * 163.70778 * 7 2 1 9 9 C 1.41395 * 119.99944 * 343.71366 * 7 2 1 10 10 C 1.40734 * 120.24683 * 334.18905 * 9 7 2 11 11 C 1.37600 * 119.74461 * 180.28232 * 10 9 7 12 12 C 1.38655 * 120.24992 * 359.69875 * 11 10 9 13 13 C 1.38613 * 120.50130 * 0.02562 * 12 11 10 14 14 C 1.37638 * 120.24748 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.12677 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47227 * 264.99562 * 15 14 13 17 17 O 1.21277 * 119.99750 * 0.02562 * 16 15 14 18 18 N 1.34897 * 120.00139 * 179.97438 * 16 15 14 19 19 C 1.47713 * 121.66387 * 179.97438 * 18 16 15 20 20 C 1.52877 * 109.40497 * 69.59932 * 19 18 16 21 21 C 1.53049 * 109.58959 * 132.89503 * 20 19 18 22 22 C 1.52976 * 109.50640 * 216.67379 * 21 20 19 23 23 C 1.53019 * 109.60756 * 91.28820 * 22 21 20 24 24 N 1.47653 * 108.80332 * 296.17563 * 23 22 21 25 25 C 1.36065 * 116.91675 * 104.55847 * 24 23 22 26 26 O 1.21265 * 120.84876 * 9.94534 * 25 24 23 27 27 C 1.50759 * 118.89771 * 189.75577 * 25 24 23 28 28 C 1.47763 * 121.55512 * 0.65372 * 18 16 15 29 29 H 0.96997 * 119.99601 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.12668 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.87264 * 179.72527 * 11 10 9 32 32 H 1.08003 * 119.74983 * 180.02562 * 12 11 10 33 33 H 1.08002 * 119.87781 * 179.97438 * 13 12 11 34 34 H 1.09001 * 109.47293 * 144.99724 * 15 14 13 35 35 H 1.08998 * 109.47613 * 24.99759 * 15 14 13 36 36 H 1.09162 * 109.42969 * 309.68793 * 19 18 16 37 37 H 1.09020 * 109.57719 * 189.94399 * 19 18 16 38 38 H 1.08897 * 109.95457 * 12.64029 * 20 19 18 39 39 H 1.09153 * 109.37486 * 252.58718 * 20 19 18 40 40 H 1.09050 * 109.35652 * 96.74071 * 21 20 19 41 41 H 1.08924 * 109.62725 * 336.85578 * 21 20 19 42 42 H 1.09017 * 109.47936 * 211.33616 * 22 21 20 43 43 H 1.09012 * 109.51242 * 331.27095 * 22 21 20 44 44 H 1.08854 * 109.68938 * 56.56365 * 23 22 21 45 45 H 1.09111 * 109.41691 * 176.65817 * 23 22 21 46 46 H 0.97113 * 121.41043 * 285.69634 * 24 23 22 47 47 H 1.08920 * 109.50795 * 0.15482 * 27 25 24 48 48 H 1.09112 * 109.22141 * 240.52478 * 27 25 24 49 49 H 1.09108 * 109.44906 * 32.25863 * 28 18 16 50 50 H 1.09063 * 109.57661 * 152.09649 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2120 0.0005 8 1 3.0554 -1.2309 -0.2618 9 6 1.3435 -2.4118 0.3445 10 6 0.2101 -2.3805 1.1782 11 6 -0.4251 -3.5549 1.5111 12 6 0.0438 -4.7652 1.0233 13 6 1.1557 -4.8073 0.1968 14 6 1.8069 -3.6451 -0.1492 15 6 3.0152 -3.6941 -1.0485 16 6 4.2660 -3.7191 -0.2083 17 8 4.1842 -3.6997 1.0016 18 7 5.4765 -3.7643 -0.8018 19 6 6.7259 -3.7895 -0.0142 20 6 6.8475 -5.1344 0.7023 21 6 8.2573 -5.6960 0.5038 22 6 8.1849 -7.2165 0.3522 23 6 8.0512 -7.5791 -1.1284 24 7 6.7721 -7.0439 -1.6359 25 6 6.8365 -5.9320 -2.4176 26 8 7.9014 -5.5190 -2.8248 27 6 5.5577 -5.2186 -2.7763 28 6 5.6165 -3.7759 -2.2728 29 1 -0.4849 0.8401 0.0004 30 1 -0.1572 -1.4388 1.5586 31 1 -1.2924 -3.5337 2.1543 32 1 -0.4613 -5.6820 1.2894 33 1 1.5125 -5.7557 -0.1771 34 1 3.0263 -2.8132 -1.6904 35 1 2.9734 -4.5922 -1.6647 36 1 6.7064 -2.9850 0.7234 37 1 7.5790 -3.6475 -0.6779 38 1 6.1189 -5.8369 0.3004 39 1 6.6637 -4.9943 1.7691 40 1 8.8712 -5.4461 1.3698 41 1 8.7015 -5.2617 -0.3909 42 1 9.0928 -7.6657 0.7552 43 1 7.3205 -7.5960 0.8973 44 1 8.8819 -7.1516 -1.6871 45 1 8.0596 -8.6647 -1.2381 46 1 5.9239 -7.4578 -1.4071 47 1 4.7133 -5.7350 -2.3217 48 1 5.4384 -5.2186 -3.8608 49 1 4.8046 -3.2001 -2.7196 50 1 6.5714 -3.3295 -2.5525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889429066.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:51 Heat of formation + Delta-G solvation = -79.456273 kcal Electronic energy + Delta-G solvation = -31660.941954 eV Core-core repulsion = 27651.387080 eV Total energy + Delta-G solvation = -4009.554873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.37220 -40.37370 -39.11684 -37.38288 -36.73838 -35.47952 -34.71874 -33.34942 -31.63300 -31.35139 -31.11192 -28.66209 -27.04493 -26.06038 -25.08588 -23.64804 -22.78287 -21.81776 -21.59963 -21.19613 -19.78305 -19.02397 -18.29613 -17.77778 -17.44154 -17.12370 -16.81825 -16.53045 -16.17691 -16.14580 -15.48658 -15.32820 -15.29289 -14.86186 -14.71842 -14.37681 -14.28379 -14.04404 -13.69975 -13.53545 -13.49993 -13.33106 -13.21130 -12.88064 -12.79792 -12.74578 -12.55082 -12.46721 -12.39927 -12.31466 -12.12618 -11.88525 -11.78508 -11.54743 -11.29331 -11.17793 -11.00554 -10.78042 -10.62799 -9.84535 -9.63029 -9.19270 -9.12525 -8.58153 -6.27258 1.01574 1.16177 1.35501 1.46127 1.53833 1.64620 1.89055 2.09443 2.19972 2.42717 2.80146 3.61682 3.73105 3.84517 3.96156 4.02050 4.05255 4.15715 4.27941 4.29238 4.36585 4.40861 4.45349 4.51461 4.52912 4.66216 4.72596 4.73130 4.78020 4.82467 4.83332 4.87938 4.94000 5.04572 5.08088 5.12275 5.17112 5.22198 5.26649 5.39648 5.42913 5.57818 5.58003 5.64591 5.80313 6.06315 6.19609 6.24729 6.44815 6.53230 6.65937 6.76936 7.01766 7.14403 7.30531 7.43228 8.37995 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.003521 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.436993 B = 7950.902090 C = 8825.522003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.039 3.961 3 Si 0.966 3.034 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.482 4.482 8 H 0.068 0.932 9 C 0.097 3.903 10 C -0.195 4.195 11 C -0.119 4.119 12 C -0.241 4.241 13 C -0.088 4.088 14 C -0.185 4.185 15 C -0.064 4.064 16 C 0.525 3.475 17 O -0.568 6.568 18 N -0.620 5.620 19 C 0.117 3.883 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.132 4.132 23 C 0.106 3.894 24 N -0.728 5.728 25 C 0.525 3.475 26 O -0.575 6.575 27 C -0.160 4.160 28 C 0.113 3.887 29 H 0.285 0.715 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.042 0.958 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.416 0.584 47 H 0.097 0.903 48 H 0.132 0.868 49 H 0.104 0.896 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.652 -12.688 -6.711 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.176 4.176 3 Si 0.788 3.212 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.512 4.512 8 H 0.087 0.913 9 C 0.094 3.906 10 C -0.214 4.214 11 C -0.137 4.137 12 C -0.260 4.260 13 C -0.107 4.107 14 C -0.187 4.187 15 C -0.104 4.104 16 C 0.315 3.685 17 O -0.446 6.446 18 N -0.355 5.355 19 C -0.006 4.006 20 C -0.160 4.160 21 C -0.153 4.153 22 C -0.170 4.170 23 C -0.017 4.017 24 N -0.382 5.382 25 C 0.313 3.687 26 O -0.454 6.454 27 C -0.201 4.201 28 C -0.009 4.009 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.133 0.867 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.111 0.889 46 H 0.253 0.747 47 H 0.116 0.884 48 H 0.150 0.850 49 H 0.122 0.878 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.112 -12.233 -6.336 19.721 hybrid contribution -0.436 0.988 0.669 1.270 sum 13.675 -11.245 -5.667 18.590 Atomic orbital electron populations 1.69880 1.08703 1.30094 1.36588 1.26596 0.95360 1.03963 0.91658 0.85445 0.78889 0.77108 0.79773 1.17806 1.19333 1.19564 1.19582 0.96975 0.92027 1.42604 0.91339 1.17713 0.91266 0.92876 0.88704 1.21294 1.00646 0.96747 1.02748 1.20939 0.99202 0.93502 1.00094 1.20718 1.01669 0.96585 1.07077 1.20724 0.95533 0.96670 0.97724 1.19563 1.00393 0.93346 1.05387 1.20312 0.88800 1.04396 0.96846 1.21080 0.84797 0.74308 0.88319 1.90665 1.87071 1.50031 1.16832 1.48853 1.04862 1.74251 1.07545 1.21890 0.85942 0.97606 0.95123 1.21991 0.98190 0.96260 0.99565 1.21711 0.95352 0.96558 1.01707 1.22024 1.03149 0.95120 0.96737 1.21806 0.86709 0.99577 0.93643 1.46618 1.10566 1.29636 1.51386 1.21123 0.90969 0.80060 0.76568 1.90661 1.33158 1.66814 1.54782 1.22268 0.95960 0.96432 1.05407 1.21928 1.04953 0.95633 0.78421 0.90443 0.88797 0.87965 0.86722 0.86162 0.88784 0.86716 0.93984 0.89079 0.91034 0.93906 0.91872 0.92109 0.89422 0.91511 0.90407 0.88895 0.74672 0.88404 0.84969 0.87828 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.88 10.95 21.83 0.24 -43.64 16 2 C 0.04 1.98 5.16 85.26 0.44 2.42 16 3 Si 0.97 39.54 29.59 68.60 2.03 41.57 16 4 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 5 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.48 -25.99 8.14 23.46 0.19 -25.79 16 8 H 0.07 3.62 6.67 -2.91 -0.02 3.60 16 9 C 0.10 5.24 5.56 -21.29 -0.12 5.12 16 10 C -0.19 -10.75 8.69 22.73 0.20 -10.55 16 11 C -0.12 -5.82 10.02 22.22 0.22 -5.59 16 12 C -0.24 -10.68 10.05 22.46 0.23 -10.46 16 13 C -0.09 -3.79 9.66 22.22 0.21 -3.58 16 14 C -0.19 -8.59 4.43 -19.40 -0.09 -8.67 16 15 C -0.06 -2.31 3.86 29.10 0.11 -2.20 16 16 C 0.52 19.44 7.13 87.64 0.62 20.07 16 17 O -0.57 -26.99 15.79 -3.02 -0.05 -27.04 16 18 N -0.62 -17.48 2.44 -815.20 -1.99 -19.47 16 19 C 0.12 3.23 5.18 86.11 0.45 3.67 16 20 C -0.12 -3.04 4.37 30.57 0.13 -2.91 16 21 C -0.12 -2.24 5.23 30.60 0.16 -2.08 16 22 C -0.13 -1.89 5.75 30.59 0.18 -1.72 16 23 C 0.11 1.46 6.31 86.16 0.54 2.01 16 24 N -0.73 -10.84 3.90 -458.71 -1.79 -12.63 16 25 C 0.52 10.05 5.26 87.47 0.46 10.51 16 26 O -0.57 -14.77 15.43 -2.98 -0.05 -14.82 16 27 C -0.16 -2.51 6.05 29.84 0.18 -2.33 16 28 C 0.11 2.32 5.36 86.11 0.46 2.78 16 29 H 0.28 13.78 8.30 -92.71 -0.77 13.01 16 30 H 0.09 5.46 6.20 -2.91 -0.02 5.45 16 31 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.11 4.31 8.06 -2.91 -0.02 4.28 16 33 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.09 3.42 6.43 -2.39 -0.02 3.41 16 35 H 0.11 3.08 7.23 -2.39 -0.02 3.06 16 36 H 0.04 1.36 8.13 -2.30 -0.02 1.34 16 37 H 0.09 2.25 6.51 -2.38 -0.02 2.24 16 38 H 0.07 1.78 6.02 -2.44 -0.01 1.77 16 39 H 0.04 1.26 8.15 -2.31 -0.02 1.24 16 40 H 0.06 1.17 8.15 -2.36 -0.02 1.15 16 41 H 0.06 1.32 6.04 -2.43 -0.01 1.30 16 42 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.07 0.99 7.70 -2.38 -0.02 0.97 16 44 H 0.08 1.37 6.76 -2.46 -0.02 1.35 16 45 H 0.09 0.85 8.15 -2.33 -0.02 0.83 16 46 H 0.42 4.73 8.74 -92.62 -0.81 3.92 16 47 H 0.10 1.36 7.11 -2.43 -0.02 1.34 16 48 H 0.13 1.49 8.15 -2.33 -0.02 1.47 16 49 H 0.10 1.95 6.76 -2.33 -0.02 1.94 16 50 H 0.09 1.87 7.31 -2.35 -0.02 1.85 16 Total: -1.00 -72.89 386.47 3.13 -69.76 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: 0.16 Total: 35.58 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 4.58 Total: -29.30 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -3.54 Total: -75.75 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -0.09 Total: -41.86 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -72.89 3.13 -69.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889429066.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.697 kcal (2) G-P(sol) polarization free energy of solvation -72.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds