Wall clock time and date at job start Wed Apr 1 2020 03:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99627 * 2 1 4 4 H 1.48504 * 109.47343 * 269.99718 * 3 2 1 5 5 H 1.48492 * 109.47592 * 30.00022 * 3 2 1 6 6 H 1.48508 * 109.46821 * 150.00160 * 3 2 1 7 7 C 1.37878 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99667 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00041 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.46963 * 179.97438 * 9 7 2 11 11 C 1.38289 * 119.92643 * 90.00572 * 10 9 7 12 12 C 1.38109 * 120.06649 * 180.02562 * 11 10 9 13 13 C 1.38866 * 119.93415 * 0.23343 * 12 11 10 14 14 N 1.39925 * 120.07228 * 179.72664 * 13 12 11 15 15 C 1.34780 * 119.99962 * 323.22268 * 14 13 12 16 16 O 1.21292 * 119.99682 * 5.19773 * 15 14 13 17 17 C 1.50694 * 120.00228 * 185.19324 * 15 14 13 18 18 N 1.46905 * 112.84974 * 328.26619 * 17 15 14 19 19 C 1.47017 * 110.99922 * 80.12395 * 18 17 15 20 20 C 1.53098 * 109.25492 * 177.60944 * 19 18 17 21 21 O 1.43019 * 109.25961 * 56.84490 * 20 19 18 22 22 C 1.43012 * 113.73639 * 301.32859 * 21 20 19 23 23 C 1.47005 * 111.00077 * 316.48455 * 18 17 15 24 24 C 1.53778 * 113.61883 * 197.06602 * 17 15 14 25 25 C 1.53951 * 87.02153 * 220.05084 * 24 17 15 26 26 C 1.53774 * 87.11236 * 25.36181 * 25 24 17 27 27 C 1.38878 * 119.85627 * 359.44450 * 13 12 11 28 28 C 1.38108 * 119.92953 * 0.60125 * 27 13 12 29 29 H 0.96999 * 120.00116 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.46887 * 60.00210 * 9 7 2 31 31 H 1.08999 * 109.47427 * 300.00541 * 9 7 2 32 32 H 1.07994 * 119.96072 * 359.97438 * 11 10 9 33 33 H 1.08005 * 120.02965 * 179.97438 * 12 11 10 34 34 H 0.96997 * 120.00522 * 143.23159 * 14 13 12 35 35 H 1.09004 * 109.50214 * 297.53760 * 19 18 17 36 36 H 1.08995 * 109.50772 * 57.67086 * 19 18 17 37 37 H 1.09002 * 109.50405 * 296.90913 * 20 19 18 38 38 H 1.09005 * 109.50527 * 176.77885 * 20 19 18 39 39 H 1.08996 * 109.50939 * 298.73342 * 22 21 20 40 40 H 1.09000 * 109.50370 * 178.61137 * 22 21 20 41 41 H 1.09002 * 109.51093 * 302.33108 * 23 18 17 42 42 H 1.09002 * 109.50952 * 62.41086 * 23 18 17 43 43 H 1.09003 * 113.60887 * 334.57008 * 24 17 15 44 44 H 1.09000 * 113.61735 * 105.46781 * 24 17 15 45 45 H 1.08994 * 113.53751 * 270.80701 * 25 24 17 46 46 H 1.09003 * 113.66651 * 139.92948 * 25 24 17 47 47 H 1.09004 * 113.61393 * 220.08741 * 26 25 24 48 48 H 1.09003 * 113.61625 * 89.18843 * 26 25 24 49 49 H 1.08000 * 120.03239 * 180.27722 * 27 13 12 50 50 H 1.07995 * 119.96405 * 179.70072 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6147 0.0013 11 6 4.2436 -3.2665 -1.1965 12 6 4.7034 -4.5688 -1.1986 13 6 4.9306 -5.2254 0.0037 14 7 5.3911 -6.5467 0.0050 15 6 4.9543 -7.4134 -0.9302 16 8 4.2367 -7.0260 -1.8280 17 6 5.3577 -8.8637 -0.8605 18 7 6.6927 -9.0571 -0.2788 19 6 6.6430 -8.9876 1.1889 20 6 8.0407 -9.2530 1.7546 21 8 8.9615 -8.3104 1.1986 22 6 9.0356 -8.3514 -0.2290 23 6 7.6481 -8.0768 -0.8147 24 6 5.1435 -9.6268 -2.1783 25 6 4.6549 -10.8086 -1.3212 26 6 4.2807 -9.7738 -0.2470 27 6 4.7054 -4.5658 1.2050 28 6 4.2447 -3.2639 1.2004 29 1 -0.4850 0.8400 -0.0004 30 1 3.8752 -0.6795 0.8896 31 1 3.8746 -0.6806 -0.8904 32 1 4.0623 -2.7568 -2.1312 33 1 4.8822 -5.0774 -2.1345 34 1 6.0245 -6.8390 0.6789 35 1 6.3087 -7.9963 1.4951 36 1 5.9491 -9.7389 1.5656 37 1 8.3529 -10.2643 1.4935 38 1 8.0207 -9.1461 2.8392 39 1 9.3768 -9.3363 -0.5477 40 1 9.7353 -7.5924 -0.5790 41 1 7.6878 -8.1632 -1.9006 42 1 7.3294 -7.0709 -0.5413 43 1 4.3674 -9.1960 -2.8110 44 1 6.0672 -9.8312 -2.7196 45 1 5.4535 -11.4849 -1.0166 46 1 3.7957 -11.3297 -1.7435 47 1 4.5088 -10.0969 0.7688 48 1 3.2682 -9.3834 -0.3507 49 1 4.8855 -5.0722 2.1417 50 1 4.0648 -2.7521 2.1342 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928401691.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:21 Heat of formation + Delta-G solvation = -1.970102 kcal Electronic energy + Delta-G solvation = -30905.652254 eV Core-core repulsion = 26899.457434 eV Total energy + Delta-G solvation = -4006.194821 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.78488 -39.52936 -38.81149 -37.55803 -35.56672 -34.27400 -32.89105 -31.76549 -30.84554 -30.39703 -28.33939 -27.08974 -26.38946 -25.22019 -24.08456 -23.10148 -22.49104 -21.31357 -21.18745 -20.05020 -19.43122 -18.19181 -17.23160 -16.76444 -16.65956 -16.40940 -15.65803 -15.50137 -15.41942 -15.26520 -15.06089 -14.88545 -14.40845 -14.19042 -14.02265 -13.69876 -13.22164 -13.10495 -12.95336 -12.66609 -12.45979 -12.40052 -12.20484 -11.99397 -11.78479 -11.67645 -11.61585 -11.48911 -11.29480 -10.94664 -10.84657 -10.60567 -10.42305 -10.40132 -10.19737 -10.06858 -9.82237 -9.66271 -9.31425 -8.80171 -8.58000 -8.37579 -7.48196 -6.06660 -4.05910 1.73932 1.96852 2.47560 2.89952 3.13694 3.28891 3.36473 3.39065 3.43609 4.02314 4.11475 4.28338 4.36173 4.41367 4.41722 4.45584 4.48770 4.63565 4.76250 4.84552 4.92603 4.99925 5.16258 5.24031 5.25029 5.34468 5.36237 5.42940 5.47471 5.48768 5.50734 5.58606 5.66073 5.74537 5.83073 5.91399 5.95234 6.01112 6.08753 6.31595 6.38051 6.52857 6.67750 6.70135 6.77584 6.93162 7.01848 7.03986 7.38091 7.55431 7.58497 7.71058 8.04684 8.50482 8.99194 9.53293 11.06370 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.002558 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.274992 B =10941.657946 C =11748.809905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.073 0.927 9 C 0.015 3.985 10 C -0.036 4.036 11 C -0.107 4.107 12 C -0.114 4.114 13 C 0.100 3.900 14 N -0.673 5.673 15 C 0.497 3.503 16 O -0.511 6.511 17 C 0.061 3.939 18 N -0.502 5.502 19 C 0.002 3.998 20 C 0.065 3.935 21 O -0.383 6.383 22 C 0.067 3.933 23 C -0.004 4.004 24 C -0.105 4.105 25 C -0.126 4.126 26 C -0.123 4.123 27 C -0.141 4.141 28 C -0.105 4.105 29 H 0.264 0.736 30 H 0.028 0.972 31 H 0.024 0.976 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.402 0.598 35 H 0.046 0.954 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.094 0.906 49 H 0.113 0.887 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.242 -23.940 1.448 30.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.551 4.551 8 H 0.092 0.908 9 C -0.022 4.022 10 C -0.036 4.036 11 C -0.125 4.125 12 C -0.134 4.134 13 C 0.008 3.992 14 N -0.325 5.325 15 C 0.282 3.718 16 O -0.384 6.384 17 C -0.033 4.033 18 N -0.227 5.227 19 C -0.126 4.126 20 C -0.012 4.012 21 O -0.301 6.301 22 C -0.010 4.010 23 C -0.132 4.132 24 C -0.143 4.143 25 C -0.163 4.163 26 C -0.161 4.161 27 C -0.161 4.161 28 C -0.124 4.124 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.244 0.756 35 H 0.063 0.937 36 H 0.118 0.882 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.079 0.921 43 H 0.119 0.881 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.090 0.910 47 H 0.099 0.901 48 H 0.112 0.888 49 H 0.131 0.869 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 17.838 -23.930 0.789 29.857 hybrid contribution 0.008 1.489 0.439 1.553 sum 17.846 -22.441 1.227 28.698 Atomic orbital electron populations 1.69904 1.06273 1.26961 1.50707 1.25007 0.94742 0.99024 0.94509 0.86798 0.80377 0.83639 0.78653 1.20150 1.21259 1.18912 1.20942 0.88264 0.94686 1.51205 0.90840 1.18809 0.97464 0.88604 0.97366 1.20320 0.93065 0.98116 0.92104 1.20996 0.99238 0.93880 0.98426 1.21062 1.01150 0.94341 0.96826 1.17620 1.03456 0.83712 0.94410 1.44349 1.45839 1.09577 1.32727 1.21482 0.80293 0.88120 0.81896 1.90726 1.35940 1.78406 1.33351 1.22783 0.90024 0.89708 1.00764 1.62248 1.05414 1.49637 1.05440 1.23148 0.99796 1.01560 0.88105 1.22686 0.86856 0.93233 0.98458 1.88037 1.62318 1.59492 1.20252 1.22659 0.95227 1.02426 0.80687 1.23177 0.93487 0.95002 1.01533 1.22905 1.02544 0.94978 0.93889 1.22729 1.01244 0.96098 0.96246 1.23110 0.97569 0.95691 0.99693 1.20751 1.03650 0.96122 0.95576 1.20853 0.99323 0.93747 0.98457 0.92602 0.95380 0.95801 0.85953 0.85588 0.75562 0.93669 0.88231 0.91837 0.88000 0.91995 0.88066 0.89004 0.92099 0.88105 0.90389 0.89328 0.90973 0.90053 0.88767 0.86884 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.51 -14.82 9.65 -34.44 -0.33 -15.16 16 8 H 0.07 2.34 7.98 -52.49 -0.42 1.93 16 9 C 0.01 0.36 4.17 -29.04 -0.12 0.24 16 10 C -0.04 -0.77 5.07 -104.59 -0.53 -1.30 16 11 C -0.11 -2.17 9.69 -39.61 -0.38 -2.55 16 12 C -0.11 -2.13 8.69 -39.40 -0.34 -2.47 16 13 C 0.10 1.69 6.27 -83.69 -0.52 1.16 16 14 N -0.67 -9.06 3.93 -9.86 -0.04 -9.09 16 15 C 0.50 6.80 5.99 -10.99 -0.07 6.73 16 16 O -0.51 -8.97 13.48 5.55 0.07 -8.89 16 17 C 0.06 0.58 0.59 -131.94 -0.08 0.51 16 18 N -0.50 -3.96 4.55 -219.06 -1.00 -4.96 16 19 C 0.00 0.01 5.13 -3.71 -0.02 -0.01 16 20 C 0.06 0.40 7.01 37.21 0.26 0.67 16 21 O -0.38 -3.30 10.83 -35.23 -0.38 -3.68 16 22 C 0.07 0.48 7.01 37.20 0.26 0.74 16 23 C 0.00 -0.03 4.98 -3.72 -0.02 -0.05 16 24 C -0.10 -0.94 7.32 -25.83 -0.19 -1.13 16 25 C -0.13 -0.90 8.00 -25.83 -0.21 -1.10 16 26 C -0.12 -1.02 7.05 -25.92 -0.18 -1.20 16 27 C -0.14 -2.35 9.97 -39.39 -0.39 -2.74 16 28 C -0.11 -2.02 9.69 -39.61 -0.38 -2.40 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 30 H 0.03 0.67 7.14 -51.92 -0.37 0.30 16 31 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 32 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 33 H 0.13 2.33 6.34 -52.48 -0.33 2.00 16 34 H 0.40 4.49 3.95 -40.82 -0.16 4.33 16 35 H 0.05 0.36 5.06 -51.93 -0.26 0.10 16 36 H 0.10 0.55 5.90 -51.93 -0.31 0.24 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.63 5.11 -51.93 -0.27 0.36 16 43 H 0.10 1.08 7.34 -51.93 -0.38 0.70 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.55 5.83 -51.93 -0.30 0.24 16 48 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 49 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 50 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 384.60 15.07 5.80 5.80 Total: -1.00 -33.74 384.60 -10.22 -43.96 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -7.43 Total: 5.33 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -3.35 Total: -18.16 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: -0.26 Total: -41.23 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.31 Total: -12.58 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.74 -10.22 -43.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401691.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.991 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds