Wall clock time and date at job start Wed Apr 1 2020 03:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99627 * 2 1 4 4 H 1.48504 * 109.47343 * 269.99718 * 3 2 1 5 5 H 1.48492 * 109.47592 * 30.00022 * 3 2 1 6 6 H 1.48508 * 109.46821 * 150.00160 * 3 2 1 7 7 C 1.37878 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99667 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00041 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.46963 * 179.97438 * 9 7 2 11 11 C 1.38289 * 119.92643 * 90.00572 * 10 9 7 12 12 C 1.38109 * 120.06649 * 180.02562 * 11 10 9 13 13 C 1.38866 * 119.93415 * 0.23343 * 12 11 10 14 14 N 1.39925 * 120.07228 * 179.72664 * 13 12 11 15 15 C 1.34780 * 119.99962 * 323.22268 * 14 13 12 16 16 O 1.21292 * 119.99682 * 5.19773 * 15 14 13 17 17 C 1.50694 * 120.00228 * 185.19324 * 15 14 13 18 18 N 1.46905 * 112.84974 * 328.26619 * 17 15 14 19 19 C 1.47017 * 110.99922 * 80.12395 * 18 17 15 20 20 C 1.53098 * 109.25492 * 177.60944 * 19 18 17 21 21 O 1.43019 * 109.25961 * 56.84490 * 20 19 18 22 22 C 1.43012 * 113.73639 * 301.32859 * 21 20 19 23 23 C 1.47005 * 111.00077 * 316.48455 * 18 17 15 24 24 C 1.53778 * 113.61883 * 197.06602 * 17 15 14 25 25 C 1.53951 * 87.02153 * 220.05084 * 24 17 15 26 26 C 1.53774 * 87.11236 * 25.36181 * 25 24 17 27 27 C 1.38878 * 119.85627 * 359.44450 * 13 12 11 28 28 C 1.38108 * 119.92953 * 0.60125 * 27 13 12 29 29 H 0.96999 * 120.00116 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.46887 * 60.00210 * 9 7 2 31 31 H 1.08999 * 109.47427 * 300.00541 * 9 7 2 32 32 H 1.07994 * 119.96072 * 359.97438 * 11 10 9 33 33 H 1.08005 * 120.02965 * 179.97438 * 12 11 10 34 34 H 0.96997 * 120.00522 * 143.23159 * 14 13 12 35 35 H 1.09004 * 109.50214 * 297.53760 * 19 18 17 36 36 H 1.08995 * 109.50772 * 57.67086 * 19 18 17 37 37 H 1.09002 * 109.50405 * 296.90913 * 20 19 18 38 38 H 1.09005 * 109.50527 * 176.77885 * 20 19 18 39 39 H 1.08996 * 109.50939 * 298.73342 * 22 21 20 40 40 H 1.09000 * 109.50370 * 178.61137 * 22 21 20 41 41 H 1.09002 * 109.51093 * 302.33108 * 23 18 17 42 42 H 1.09002 * 109.50952 * 62.41086 * 23 18 17 43 43 H 1.09003 * 113.60887 * 334.57008 * 24 17 15 44 44 H 1.09000 * 113.61735 * 105.46781 * 24 17 15 45 45 H 1.08994 * 113.53751 * 270.80701 * 25 24 17 46 46 H 1.09003 * 113.66651 * 139.92948 * 25 24 17 47 47 H 1.09004 * 113.61393 * 220.08741 * 26 25 24 48 48 H 1.09003 * 113.61625 * 89.18843 * 26 25 24 49 49 H 1.08000 * 120.03239 * 180.27722 * 27 13 12 50 50 H 1.07995 * 119.96405 * 179.70072 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6147 0.0013 11 6 4.2436 -3.2665 -1.1965 12 6 4.7034 -4.5688 -1.1986 13 6 4.9306 -5.2254 0.0037 14 7 5.3911 -6.5467 0.0050 15 6 4.9543 -7.4134 -0.9302 16 8 4.2367 -7.0260 -1.8280 17 6 5.3577 -8.8637 -0.8605 18 7 6.6927 -9.0571 -0.2788 19 6 6.6430 -8.9876 1.1889 20 6 8.0407 -9.2530 1.7546 21 8 8.9615 -8.3104 1.1986 22 6 9.0356 -8.3514 -0.2290 23 6 7.6481 -8.0768 -0.8147 24 6 5.1435 -9.6268 -2.1783 25 6 4.6549 -10.8086 -1.3212 26 6 4.2807 -9.7738 -0.2470 27 6 4.7054 -4.5658 1.2050 28 6 4.2447 -3.2639 1.2004 29 1 -0.4850 0.8400 -0.0004 30 1 3.8752 -0.6795 0.8896 31 1 3.8746 -0.6806 -0.8904 32 1 4.0623 -2.7568 -2.1312 33 1 4.8822 -5.0774 -2.1345 34 1 6.0245 -6.8390 0.6789 35 1 6.3087 -7.9963 1.4951 36 1 5.9491 -9.7389 1.5656 37 1 8.3529 -10.2643 1.4935 38 1 8.0207 -9.1461 2.8392 39 1 9.3768 -9.3363 -0.5477 40 1 9.7353 -7.5924 -0.5790 41 1 7.6878 -8.1632 -1.9006 42 1 7.3294 -7.0709 -0.5413 43 1 4.3674 -9.1960 -2.8110 44 1 6.0672 -9.8312 -2.7196 45 1 5.4535 -11.4849 -1.0166 46 1 3.7957 -11.3297 -1.7435 47 1 4.5088 -10.0969 0.7688 48 1 3.2682 -9.3834 -0.3507 49 1 4.8855 -5.0722 2.1417 50 1 4.0648 -2.7521 2.1342 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928401691.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:19 Heat of formation + Delta-G solvation = -24.324356 kcal Electronic energy + Delta-G solvation = -30906.621608 eV Core-core repulsion = 26899.457434 eV Total energy + Delta-G solvation = -4007.164174 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.68772 -40.62348 -39.73239 -38.63090 -36.68759 -35.41401 -34.70724 -32.61173 -32.30932 -31.88892 -29.41583 -28.41648 -27.05820 -26.13916 -24.75508 -24.63928 -23.93950 -22.52625 -22.04824 -21.39843 -20.28934 -19.02031 -18.99711 -18.42197 -17.30859 -17.10398 -16.87921 -16.46662 -16.34540 -16.12240 -16.08978 -16.00938 -15.74372 -15.36415 -15.16595 -14.91052 -14.50216 -14.39976 -14.27236 -14.02577 -13.70713 -13.54089 -13.33505 -13.25519 -12.92584 -12.62658 -12.57037 -12.42248 -12.32517 -12.12272 -12.02530 -11.89526 -11.80663 -11.62057 -11.51016 -11.23819 -11.15059 -11.00024 -10.81323 -10.65236 -9.88087 -9.58287 -8.97684 -8.32121 -6.38083 0.30163 0.46331 1.34038 1.35549 1.37157 1.49473 1.84787 2.33714 2.40776 2.84390 2.93603 3.01979 3.28232 3.31352 3.57780 3.80901 3.82355 3.88371 3.94124 4.03183 4.04348 4.21879 4.23161 4.24815 4.28918 4.42460 4.50139 4.54043 4.59676 4.63510 4.73267 4.77403 4.80118 4.88014 4.95831 4.96668 4.98027 5.02369 5.06530 5.08842 5.19544 5.29464 5.31507 5.34932 5.48549 5.55029 5.66789 5.71284 5.91583 6.06170 6.17095 6.24361 6.26017 6.68206 6.92968 7.25421 8.84747 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.002558 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.274992 B =10941.657946 C =11748.809905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.242 1.242 7 C -0.522 4.522 8 H 0.023 0.977 9 C 0.022 3.978 10 C -0.069 4.069 11 C -0.119 4.119 12 C -0.123 4.123 13 C 0.109 3.891 14 N -0.663 5.663 15 C 0.493 3.507 16 O -0.556 6.556 17 C 0.065 3.935 18 N -0.488 5.488 19 C -0.001 4.001 20 C 0.064 3.936 21 O -0.403 6.403 22 C 0.070 3.930 23 C -0.004 4.004 24 C -0.110 4.110 25 C -0.109 4.109 26 C -0.122 4.122 27 C -0.132 4.132 28 C -0.110 4.110 29 H 0.268 0.732 30 H 0.038 0.962 31 H 0.029 0.971 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.416 0.584 35 H 0.035 0.965 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.079 0.921 47 H 0.104 0.896 48 H 0.076 0.924 49 H 0.152 0.848 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.934 -25.661 3.021 33.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.165 1.165 7 C -0.560 4.560 8 H 0.041 0.959 9 C -0.015 4.015 10 C -0.069 4.069 11 C -0.138 4.138 12 C -0.143 4.143 13 C 0.015 3.985 14 N -0.315 5.315 15 C 0.280 3.720 16 O -0.431 6.431 17 C -0.029 4.029 18 N -0.214 5.214 19 C -0.129 4.129 20 C -0.013 4.013 21 O -0.321 6.321 22 C -0.006 4.006 23 C -0.133 4.133 24 C -0.149 4.149 25 C -0.146 4.146 26 C -0.160 4.160 27 C -0.152 4.152 28 C -0.129 4.129 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.261 0.739 35 H 0.053 0.947 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.109 0.891 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.125 0.875 46 H 0.098 0.902 47 H 0.122 0.878 48 H 0.094 0.906 49 H 0.170 0.830 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 20.573 -25.693 2.387 33.002 hybrid contribution -0.848 1.850 -0.066 2.036 sum 19.725 -23.843 2.321 31.032 Atomic orbital electron populations 1.70069 1.08428 1.28362 1.52226 1.26036 0.95646 1.03562 0.93827 0.85600 0.79605 0.77772 0.79347 1.19163 1.20669 1.16491 1.21162 0.90921 0.92901 1.51046 0.95894 1.18651 0.94149 0.90894 0.97800 1.20211 0.95734 0.97422 0.93560 1.21012 0.99987 0.94714 0.98072 1.21072 1.01686 0.93848 0.97706 1.17777 1.01729 0.85057 0.93903 1.44419 1.45800 1.08133 1.33185 1.22446 0.79126 0.89667 0.80725 1.90711 1.37953 1.79423 1.35048 1.22901 0.91421 0.86673 1.01867 1.62332 1.03937 1.48830 1.06253 1.23300 1.00941 1.01548 0.87119 1.22853 0.85777 0.93367 0.99283 1.88017 1.62956 1.60390 1.20774 1.22694 0.94330 1.03392 0.80223 1.23186 0.94423 0.93934 1.01718 1.22908 1.02399 0.95839 0.93711 1.22694 1.01895 0.95316 0.94725 1.23143 0.96077 0.95419 1.01385 1.21046 1.01996 0.95146 0.96975 1.21036 0.99107 0.94811 0.97925 0.92295 0.94383 0.95292 0.86492 0.85938 0.73886 0.94719 0.86284 0.90639 0.86364 0.90710 0.87451 0.89105 0.94170 0.90434 0.89519 0.87520 0.90216 0.87772 0.90560 0.83047 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 2 C 0.01 0.37 5.47 84.65 0.46 0.83 16 3 Si 0.95 44.59 27.47 68.60 1.88 46.48 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 7 C -0.52 -31.34 9.65 25.60 0.25 -31.09 16 8 H 0.02 1.55 7.98 -2.91 -0.02 1.53 16 9 C 0.02 1.09 4.17 29.10 0.12 1.21 16 10 C -0.07 -3.03 5.07 -19.84 -0.10 -3.13 16 11 C -0.12 -5.03 9.69 22.25 0.22 -4.82 16 12 C -0.12 -4.72 8.69 22.39 0.19 -4.53 16 13 C 0.11 3.61 6.27 38.15 0.24 3.85 16 14 N -0.66 -17.17 3.93 -303.50 -1.19 -18.36 16 15 C 0.49 13.36 5.99 87.65 0.53 13.88 16 16 O -0.56 -20.12 13.48 -3.07 -0.04 -20.16 16 17 C 0.07 1.16 0.59 3.30 0.00 1.16 16 18 N -0.49 -6.50 4.55 -846.97 -3.86 -10.35 16 19 C 0.00 -0.01 5.13 86.31 0.44 0.43 16 20 C 0.06 0.58 7.01 72.01 0.50 1.08 16 21 O -0.40 -5.87 10.83 -148.98 -1.61 -7.48 16 22 C 0.07 0.85 7.01 72.01 0.50 1.35 16 23 C 0.00 -0.07 4.98 86.31 0.43 0.36 16 24 C -0.11 -1.87 7.32 31.18 0.23 -1.64 16 25 C -0.11 -1.27 8.00 31.18 0.25 -1.02 16 26 C -0.12 -1.78 7.05 31.12 0.22 -1.56 16 27 C -0.13 -4.20 9.97 22.39 0.22 -3.98 16 28 C -0.11 -4.18 9.69 22.25 0.22 -3.97 16 29 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 30 H 0.04 1.77 7.14 -2.38 -0.02 1.75 16 31 H 0.03 1.37 7.51 -2.39 -0.02 1.35 16 32 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 33 H 0.12 4.75 6.34 -2.91 -0.02 4.73 16 34 H 0.42 8.50 3.95 -92.71 -0.37 8.13 16 35 H 0.04 0.45 5.06 -2.38 -0.01 0.44 16 36 H 0.12 0.80 5.90 -2.39 -0.01 0.79 16 37 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.04 0.78 5.11 -2.39 -0.01 0.77 16 43 H 0.08 1.70 7.34 -2.39 -0.02 1.69 16 44 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.10 1.02 5.83 -2.39 -0.01 1.01 16 48 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 49 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 50 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -76.93 384.60 0.94 -75.99 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.54 Total: 26.18 kcal Atomic # 6 Polarization: -36.49 SS G_CDS: 4.93 Total: -31.57 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -4.75 Total: -89.44 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.65 Total: -27.64 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.48 kcal Total: -76.93 0.94 -75.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401691.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.669 kcal (2) G-P(sol) polarization free energy of solvation -76.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds