Wall clock time and date at job start Wed Apr 1 2020 03:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00469 * 2 1 4 4 H 1.48493 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46678 * 300.00047 * 3 2 1 6 6 H 1.48504 * 109.46939 * 59.99752 * 3 2 1 7 7 C 1.38814 * 119.99213 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99531 * 197.37561 * 7 2 1 9 9 N 1.36930 * 120.00634 * 17.38471 * 7 2 1 10 10 C 1.46925 * 120.63351 * 207.67777 * 9 7 2 11 11 C 1.53189 * 108.77700 * 233.58394 * 10 9 7 12 12 C 1.53044 * 109.31153 * 305.36226 * 11 10 9 13 13 N 1.46494 * 109.46142 * 181.38419 * 12 11 10 14 14 C 1.34778 * 120.00243 * 155.00087 * 13 12 11 15 15 O 1.21285 * 119.99965 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00056 * 179.72541 * 14 13 12 17 17 C 1.50696 * 109.87405 * 275.97618 * 16 14 13 18 18 C 1.38237 * 120.00095 * 269.03333 * 17 16 14 19 19 C 1.38239 * 119.99999 * 179.76671 * 18 17 16 20 20 C 1.38233 * 119.99865 * 0.49563 * 19 18 17 21 21 C 1.38240 * 119.99773 * 359.75290 * 20 19 18 22 22 C 1.38232 * 120.00285 * 359.97438 * 21 20 19 23 23 C 1.54106 * 109.87970 * 154.96920 * 16 14 13 24 24 C 1.55151 * 104.02602 * 242.64258 * 23 16 14 25 25 C 1.54985 * 102.14724 * 20.77924 * 24 23 16 26 26 O 1.43745 * 109.88040 * 36.98775 * 16 14 13 27 27 C 1.53045 * 109.53880 * 61.36737 * 12 11 10 28 28 C 1.46928 * 120.62894 * 27.65037 * 9 7 2 29 29 H 0.97002 * 119.99100 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58808 * 113.79624 * 10 9 7 31 31 H 1.08999 * 109.58749 * 353.37079 * 10 9 7 32 32 H 1.09001 * 109.49787 * 185.41282 * 11 10 9 33 33 H 1.08998 * 109.49712 * 65.31476 * 11 10 9 34 34 H 1.09002 * 109.46232 * 301.35730 * 12 11 10 35 35 H 0.97000 * 120.00304 * 335.00478 * 13 12 11 36 36 H 1.08000 * 119.99758 * 359.97438 * 18 17 16 37 37 H 1.07994 * 119.99852 * 180.22625 * 19 18 17 38 38 H 1.07999 * 119.99779 * 179.72827 * 20 19 18 39 39 H 1.08004 * 119.99229 * 179.97438 * 21 20 19 40 40 H 1.07996 * 119.99722 * 179.97438 * 22 21 20 41 41 H 1.09003 * 110.48492 * 1.27900 * 23 16 14 42 42 H 1.09000 * 110.48729 * 123.92865 * 23 16 14 43 43 H 1.08999 * 110.83110 * 262.58052 * 24 23 16 44 44 H 1.08992 * 110.95516 * 139.03402 * 24 23 16 45 45 H 1.09005 * 110.62146 * 204.52599 * 25 24 23 46 46 H 1.09000 * 110.75354 * 81.59840 * 25 24 23 47 47 H 1.08998 * 109.49469 * 58.58144 * 27 12 11 48 48 H 1.08996 * 109.50129 * 178.68576 * 27 12 11 49 49 H 1.09003 * 109.58769 * 246.20651 * 28 9 7 50 50 H 1.08996 * 109.58681 * 6.63099 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0533 -1.2235 0.2799 9 7 1.3724 -2.3612 -0.3532 10 6 1.8191 -3.6548 0.1813 11 6 2.0742 -4.6102 -0.9886 12 6 0.8185 -4.6900 -1.8599 13 7 1.0475 -5.6283 -2.9613 14 6 0.0037 -6.2484 -3.5465 15 8 -1.1253 -6.0292 -3.1615 16 6 0.2389 -7.2089 -4.6837 17 6 0.3495 -6.4499 -5.9808 18 6 -0.7791 -6.2196 -6.7453 19 6 -0.6784 -5.5191 -7.9328 20 6 0.5524 -5.0579 -8.3609 21 6 1.6817 -5.2927 -7.5990 22 6 1.5801 -5.9882 -6.4087 23 6 -0.9221 -8.2190 -4.7650 24 6 -0.2468 -9.5903 -4.4987 25 6 1.0609 -9.1752 -3.7779 26 8 1.4442 -7.9567 -4.4506 27 6 0.5007 -3.3049 -2.4279 28 6 0.2279 -2.3346 -1.2742 29 1 -0.4849 0.8401 -0.0004 30 1 1.0467 -4.0688 0.8294 31 1 2.7398 -3.5175 0.7484 32 1 2.3133 -5.6014 -0.6034 33 1 2.9081 -4.2403 -1.5852 34 1 -0.0207 -5.0362 -1.2566 35 1 1.9505 -5.8034 -3.2695 36 1 -1.7399 -6.5840 -6.4131 37 1 -1.5606 -5.3361 -8.5282 38 1 0.6317 -4.5145 -9.2909 39 1 2.6433 -4.9326 -7.9338 40 1 2.4625 -6.1719 -5.8137 41 1 -1.6682 -8.0052 -3.9996 42 1 -1.3750 -8.2007 -5.7563 43 1 -0.0289 -10.1034 -5.4353 44 1 -0.8671 -10.2112 -3.8524 45 1 1.8275 -9.9401 -3.9029 46 1 0.8762 -8.9880 -2.7201 47 1 1.3494 -2.9473 -3.0109 48 1 -0.3800 -3.3670 -3.0670 49 1 -0.6744 -2.6410 -0.7448 50 1 0.0987 -1.3264 -1.6675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932217906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:28 Heat of formation + Delta-G solvation = -31.504504 kcal Electronic energy + Delta-G solvation = -31312.779059 eV Core-core repulsion = 27305.303531 eV Total energy + Delta-G solvation = -4007.475528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.13698 -38.98309 -38.44078 -37.17184 -34.46786 -32.80002 -32.45772 -31.78352 -30.92800 -30.03878 -29.46581 -28.22204 -25.30199 -24.10342 -23.11298 -22.48317 -22.21380 -21.71934 -20.98612 -19.88241 -19.21388 -17.78624 -17.49832 -16.67194 -16.59946 -15.84271 -15.61745 -15.05857 -14.88182 -14.78891 -14.40956 -14.17740 -13.92475 -13.69443 -13.50085 -13.47623 -13.30247 -12.98877 -12.85852 -12.49733 -12.42596 -12.20143 -12.01565 -11.54523 -11.46994 -11.41151 -11.13417 -11.06054 -10.99317 -10.93786 -10.72366 -10.67022 -10.36230 -10.20534 -10.03990 -9.73889 -9.71612 -9.44036 -9.04272 -8.81392 -8.67399 -8.40305 -6.67365 -5.76915 -3.19391 1.11185 1.27416 2.69935 3.25305 3.38380 3.40460 3.46213 3.48378 3.68211 4.24063 4.39723 4.50999 4.64540 4.68481 4.80359 4.86661 4.91220 4.97588 5.11252 5.30789 5.33644 5.36642 5.40542 5.44378 5.47059 5.47967 5.53954 5.65476 5.66813 5.77894 5.82697 5.85451 5.88923 6.10283 6.23772 6.26686 6.31869 6.37199 6.38519 6.45826 6.55480 6.63011 6.67285 6.79885 6.82283 6.94018 6.96816 7.39834 7.68838 7.75320 7.81511 8.37527 8.46528 9.22525 9.86061 10.42696 11.31617 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.003087 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.111898 B = 9069.282901 C =10161.762001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.149 3.851 11 C -0.138 4.138 12 C 0.149 3.851 13 N -0.708 5.708 14 C 0.509 3.491 15 O -0.534 6.534 16 C 0.133 3.867 17 C -0.081 4.081 18 C -0.104 4.104 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.089 4.089 23 C -0.143 4.143 24 C -0.152 4.152 25 C 0.043 3.957 26 O -0.356 6.356 27 C -0.145 4.145 28 C 0.174 3.826 29 H 0.253 0.747 30 H 0.020 0.980 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.399 0.601 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.020 0.980 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.513 -19.375 -14.982 24.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.022 3.978 11 C -0.178 4.178 12 C 0.046 3.954 13 N -0.357 5.357 14 C 0.292 3.708 15 O -0.411 6.411 16 C 0.090 3.910 17 C -0.082 4.082 18 C -0.122 4.122 19 C -0.139 4.139 20 C -0.133 4.133 21 C -0.140 4.140 22 C -0.107 4.107 23 C -0.180 4.180 24 C -0.190 4.190 25 C -0.033 4.033 26 O -0.275 6.275 27 C -0.185 4.185 28 C 0.048 3.952 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.233 0.767 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.118 0.882 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.117 0.883 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.038 0.962 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.823 -18.985 -14.714 24.034 hybrid contribution 0.664 0.777 -0.130 1.030 sum 1.488 -18.208 -14.844 23.539 Atomic orbital electron populations 1.70056 1.05269 1.25402 1.53782 1.25049 0.95268 0.98430 1.00901 0.86240 0.79357 0.84012 0.77270 1.20255 1.21568 1.21733 1.19220 0.92724 0.84845 1.41518 0.91590 1.44110 1.35870 1.01388 1.50157 1.20834 0.97935 0.86740 0.92302 1.22332 0.96706 0.99709 0.99070 1.21083 0.98706 0.88896 0.86679 1.46243 1.09408 1.43973 1.36126 1.20588 0.85465 0.81590 0.83128 1.90702 1.22548 1.64390 1.63464 1.20980 0.86903 0.91573 0.91555 1.19348 0.94513 1.00095 0.94195 1.21071 0.98041 0.98613 0.94468 1.21107 0.97826 0.98477 0.96521 1.21216 0.92827 0.99428 0.99816 1.21167 0.98828 0.98941 0.95021 1.20977 0.97130 0.96291 0.96302 1.23171 0.97406 0.92480 1.04986 1.23194 0.96892 0.97344 1.01577 1.23647 0.96801 0.86463 0.96381 1.88890 1.27589 1.32663 1.78359 1.22547 1.00437 0.95059 1.00473 1.20758 0.88611 0.98191 0.87652 0.93659 0.96244 0.92329 0.92653 0.91825 0.90141 0.76688 0.85411 0.85775 0.85981 0.85782 0.85450 0.88250 0.89152 0.90276 0.89787 0.88332 0.91753 0.92681 0.92972 0.96197 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 11.19 55.49 0.62 -25.94 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.25 -7.00 9.59 -15.06 -0.14 -7.14 16 8 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 9 N -0.59 -15.01 2.99 -172.32 -0.52 -15.53 16 10 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 11 C -0.14 -2.38 5.55 -26.61 -0.15 -2.52 16 12 C 0.15 2.71 2.42 -67.89 -0.16 2.55 16 13 N -0.71 -10.88 5.00 -53.76 -0.27 -11.15 16 14 C 0.51 8.01 6.62 -10.99 -0.07 7.93 16 15 O -0.53 -10.18 15.23 5.55 0.08 -10.10 16 16 C 0.13 1.65 0.91 -92.35 -0.08 1.56 16 17 C -0.08 -1.00 4.84 -104.63 -0.51 -1.51 16 18 C -0.10 -1.20 8.73 -39.58 -0.35 -1.54 16 19 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 20 C -0.11 -1.14 10.05 -39.58 -0.40 -1.54 16 21 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 22 C -0.09 -1.04 9.36 -39.59 -0.37 -1.41 16 23 C -0.14 -1.50 5.66 -25.01 -0.14 -1.65 16 24 C -0.15 -1.23 7.16 -24.54 -0.18 -1.40 16 25 C 0.04 0.39 7.66 38.21 0.29 0.68 16 26 O -0.36 -4.03 9.32 -35.23 -0.33 -4.36 16 27 C -0.14 -3.01 5.65 -26.61 -0.15 -3.16 16 28 C 0.17 4.34 5.31 -3.71 -0.02 4.32 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 35 H 0.40 5.38 8.11 -40.82 -0.33 5.05 16 36 H 0.13 1.34 6.43 -52.49 -0.34 1.00 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.13 1.40 7.55 -52.49 -0.40 1.00 16 41 H 0.10 1.20 6.73 -51.93 -0.35 0.85 16 42 H 0.09 0.84 5.76 -51.93 -0.30 0.54 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 48 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.09 2.49 6.04 -51.93 -0.31 2.17 16 LS Contribution 393.56 15.07 5.93 5.93 Total: -1.00 -32.38 393.56 -10.72 -43.09 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.88 Total: 6.33 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -3.33 Total: -5.08 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.16 Total: -52.63 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.24 Total: -14.46 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.38 -10.72 -43.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932217906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.588 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds