Wall clock time and date at job start Wed Apr 1 2020 03:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00469 * 2 1 4 4 H 1.48493 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46678 * 300.00047 * 3 2 1 6 6 H 1.48504 * 109.46939 * 59.99752 * 3 2 1 7 7 C 1.38814 * 119.99213 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99531 * 197.37561 * 7 2 1 9 9 N 1.36930 * 120.00634 * 17.38471 * 7 2 1 10 10 C 1.46925 * 120.63351 * 207.67777 * 9 7 2 11 11 C 1.53189 * 108.77700 * 233.58394 * 10 9 7 12 12 C 1.53044 * 109.31153 * 305.36226 * 11 10 9 13 13 N 1.46494 * 109.46142 * 181.38419 * 12 11 10 14 14 C 1.34778 * 120.00243 * 155.00087 * 13 12 11 15 15 O 1.21285 * 119.99965 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00056 * 179.72541 * 14 13 12 17 17 C 1.50696 * 109.87405 * 275.97618 * 16 14 13 18 18 C 1.38237 * 120.00095 * 269.03333 * 17 16 14 19 19 C 1.38239 * 119.99999 * 179.76671 * 18 17 16 20 20 C 1.38233 * 119.99865 * 0.49563 * 19 18 17 21 21 C 1.38240 * 119.99773 * 359.75290 * 20 19 18 22 22 C 1.38232 * 120.00285 * 359.97438 * 21 20 19 23 23 C 1.54106 * 109.87970 * 154.96920 * 16 14 13 24 24 C 1.55151 * 104.02602 * 242.64258 * 23 16 14 25 25 C 1.54985 * 102.14724 * 20.77924 * 24 23 16 26 26 O 1.43745 * 109.88040 * 36.98775 * 16 14 13 27 27 C 1.53045 * 109.53880 * 61.36737 * 12 11 10 28 28 C 1.46928 * 120.62894 * 27.65037 * 9 7 2 29 29 H 0.97002 * 119.99100 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58808 * 113.79624 * 10 9 7 31 31 H 1.08999 * 109.58749 * 353.37079 * 10 9 7 32 32 H 1.09001 * 109.49787 * 185.41282 * 11 10 9 33 33 H 1.08998 * 109.49712 * 65.31476 * 11 10 9 34 34 H 1.09002 * 109.46232 * 301.35730 * 12 11 10 35 35 H 0.97000 * 120.00304 * 335.00478 * 13 12 11 36 36 H 1.08000 * 119.99758 * 359.97438 * 18 17 16 37 37 H 1.07994 * 119.99852 * 180.22625 * 19 18 17 38 38 H 1.07999 * 119.99779 * 179.72827 * 20 19 18 39 39 H 1.08004 * 119.99229 * 179.97438 * 21 20 19 40 40 H 1.07996 * 119.99722 * 179.97438 * 22 21 20 41 41 H 1.09003 * 110.48492 * 1.27900 * 23 16 14 42 42 H 1.09000 * 110.48729 * 123.92865 * 23 16 14 43 43 H 1.08999 * 110.83110 * 262.58052 * 24 23 16 44 44 H 1.08992 * 110.95516 * 139.03402 * 24 23 16 45 45 H 1.09005 * 110.62146 * 204.52599 * 25 24 23 46 46 H 1.09000 * 110.75354 * 81.59840 * 25 24 23 47 47 H 1.08998 * 109.49469 * 58.58144 * 27 12 11 48 48 H 1.08996 * 109.50129 * 178.68576 * 27 12 11 49 49 H 1.09003 * 109.58769 * 246.20651 * 28 9 7 50 50 H 1.08996 * 109.58681 * 6.63099 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0533 -1.2235 0.2799 9 7 1.3724 -2.3612 -0.3532 10 6 1.8191 -3.6548 0.1813 11 6 2.0742 -4.6102 -0.9886 12 6 0.8185 -4.6900 -1.8599 13 7 1.0475 -5.6283 -2.9613 14 6 0.0037 -6.2484 -3.5465 15 8 -1.1253 -6.0292 -3.1615 16 6 0.2389 -7.2089 -4.6837 17 6 0.3495 -6.4499 -5.9808 18 6 -0.7791 -6.2196 -6.7453 19 6 -0.6784 -5.5191 -7.9328 20 6 0.5524 -5.0579 -8.3609 21 6 1.6817 -5.2927 -7.5990 22 6 1.5801 -5.9882 -6.4087 23 6 -0.9221 -8.2190 -4.7650 24 6 -0.2468 -9.5903 -4.4987 25 6 1.0609 -9.1752 -3.7779 26 8 1.4442 -7.9567 -4.4506 27 6 0.5007 -3.3049 -2.4279 28 6 0.2279 -2.3346 -1.2742 29 1 -0.4849 0.8401 -0.0004 30 1 1.0467 -4.0688 0.8294 31 1 2.7398 -3.5175 0.7484 32 1 2.3133 -5.6014 -0.6034 33 1 2.9081 -4.2403 -1.5852 34 1 -0.0207 -5.0362 -1.2566 35 1 1.9505 -5.8034 -3.2695 36 1 -1.7399 -6.5840 -6.4131 37 1 -1.5606 -5.3361 -8.5282 38 1 0.6317 -4.5145 -9.2909 39 1 2.6433 -4.9326 -7.9338 40 1 2.4625 -6.1719 -5.8137 41 1 -1.6682 -8.0052 -3.9996 42 1 -1.3750 -8.2007 -5.7563 43 1 -0.0289 -10.1034 -5.4353 44 1 -0.8671 -10.2112 -3.8524 45 1 1.8275 -9.9401 -3.9029 46 1 0.8762 -8.9880 -2.7201 47 1 1.3494 -2.9473 -3.0109 48 1 -0.3800 -3.3670 -3.0670 49 1 -0.6744 -2.6410 -0.7448 50 1 0.0987 -1.3264 -1.6675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932217906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:27 Heat of formation + Delta-G solvation = -50.752073 kcal Electronic energy + Delta-G solvation = -31313.613696 eV Core-core repulsion = 27305.303531 eV Total energy + Delta-G solvation = -4008.310166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.13921 -40.18162 -39.37002 -38.72077 -36.11157 -34.01814 -33.65262 -32.89162 -31.79504 -31.71441 -31.20371 -29.10793 -27.06685 -25.26172 -23.95757 -23.88678 -23.79779 -22.81193 -22.00869 -21.28177 -20.64308 -18.99741 -18.59875 -18.31735 -17.59287 -17.01904 -16.73899 -16.54830 -15.88564 -15.78372 -15.64532 -15.61083 -15.38795 -15.16721 -14.79905 -14.71569 -14.40364 -14.26245 -14.12758 -13.97174 -13.64670 -13.25040 -13.07792 -13.04070 -12.80537 -12.68702 -12.60533 -12.24785 -12.23565 -12.15479 -12.04987 -11.91761 -11.85295 -11.78243 -11.61018 -11.57102 -11.35734 -10.60843 -10.59475 -10.06376 -9.85204 -9.71628 -8.74334 -7.89094 -5.35103 0.27226 0.46356 1.46081 1.47508 1.47830 1.58773 2.07120 2.50462 2.55531 2.83196 3.26823 3.44134 3.56464 3.58943 3.66576 3.83598 3.98689 4.02026 4.04985 4.11014 4.13236 4.25879 4.27684 4.34690 4.42489 4.56895 4.61848 4.64110 4.65823 4.74219 4.77487 4.82902 4.89680 4.91654 4.98943 5.01088 5.02809 5.08199 5.09573 5.12363 5.27136 5.40703 5.44009 5.49788 5.52110 5.58423 5.61452 5.66195 5.73672 6.04404 6.36486 6.49934 7.11183 7.13917 7.81892 8.34903 9.18248 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.003087 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.111898 B = 9069.282901 C =10161.762001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.262 4.262 8 H 0.074 0.926 9 N -0.609 5.609 10 C 0.143 3.857 11 C -0.121 4.121 12 C 0.161 3.839 13 N -0.699 5.699 14 C 0.505 3.495 15 O -0.573 6.573 16 C 0.142 3.858 17 C -0.100 4.100 18 C -0.120 4.120 19 C -0.127 4.127 20 C -0.118 4.118 21 C -0.128 4.128 22 C -0.102 4.102 23 C -0.146 4.146 24 C -0.144 4.144 25 C 0.035 3.965 26 O -0.361 6.361 27 C -0.127 4.127 28 C 0.185 3.815 29 H 0.249 0.751 30 H 0.013 0.987 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.412 0.588 36 H 0.130 0.870 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.131 0.869 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.125 0.875 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.041 0.959 49 H -0.010 1.010 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.656 -20.914 -16.546 26.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.249 4.249 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.392 4.392 8 H 0.092 0.908 9 N -0.332 5.332 10 C 0.017 3.983 11 C -0.161 4.161 12 C 0.056 3.944 13 N -0.348 5.348 14 C 0.291 3.709 15 O -0.452 6.452 16 C 0.099 3.901 17 C -0.101 4.101 18 C -0.138 4.138 19 C -0.145 4.145 20 C -0.135 4.135 21 C -0.146 4.146 22 C -0.120 4.120 23 C -0.183 4.183 24 C -0.181 4.181 25 C -0.041 4.041 26 O -0.279 6.279 27 C -0.168 4.168 28 C 0.058 3.942 29 H 0.058 0.942 30 H 0.031 0.969 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.248 0.752 36 H 0.148 0.852 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.149 0.851 41 H 0.097 0.903 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.143 0.857 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.008 0.992 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.015 -20.574 -16.288 26.413 hybrid contribution -0.032 1.219 0.363 1.272 sum 2.983 -19.355 -15.925 25.241 Atomic orbital electron populations 1.70223 1.06914 1.25803 1.55462 1.25864 0.95995 1.01773 1.01237 0.85184 0.78812 0.79660 0.76661 1.18598 1.21885 1.21969 1.19611 0.93204 0.85841 1.40554 0.90817 1.44347 1.35636 1.02585 1.50677 1.21031 0.97945 0.85505 0.93826 1.22139 0.96044 1.00506 0.97386 1.20720 0.98664 0.87692 0.87301 1.46026 1.10232 1.43212 1.35367 1.21323 0.84690 0.81569 0.83362 1.90684 1.24110 1.65717 1.64717 1.20804 0.88077 0.91230 0.89958 1.19461 0.95187 1.01042 0.94374 1.21265 0.98059 0.99253 0.95180 1.21433 0.98999 0.97826 0.96242 1.21581 0.92444 0.98933 1.00588 1.21484 1.00059 0.98451 0.94622 1.21142 0.97040 0.96785 0.97062 1.23189 0.96627 0.93598 1.04926 1.23207 0.96312 0.96054 1.02549 1.23888 0.98124 0.86164 0.95890 1.88888 1.27144 1.33434 1.78477 1.22278 0.99987 0.95936 0.98566 1.20446 0.87873 0.97275 0.88600 0.94174 0.96898 0.91245 0.89114 0.90880 0.92319 0.75169 0.85178 0.83700 0.83503 0.83807 0.85102 0.90271 0.88098 0.88731 0.88351 0.85691 0.92474 0.92366 0.94041 0.99197 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.24 11.19 21.65 0.24 -57.00 16 2 C -0.05 -3.05 4.91 84.86 0.42 -2.63 16 3 Si 0.97 45.36 29.59 68.60 2.03 47.39 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.26 -14.52 9.59 84.04 0.81 -13.72 16 8 H 0.07 3.90 7.89 -2.91 -0.02 3.88 16 9 N -0.61 -31.27 2.99 -699.09 -2.09 -33.37 16 10 C 0.14 5.87 6.52 86.36 0.56 6.44 16 11 C -0.12 -3.94 5.55 30.67 0.17 -3.77 16 12 C 0.16 5.79 2.42 45.02 0.11 5.90 16 13 N -0.70 -20.87 5.00 -442.40 -2.21 -23.08 16 14 C 0.50 15.86 6.62 87.66 0.58 16.44 16 15 O -0.57 -22.48 15.23 -3.05 -0.05 -22.53 16 16 C 0.14 3.42 0.91 -11.91 -0.01 3.41 16 17 C -0.10 -2.39 4.84 -19.87 -0.10 -2.49 16 18 C -0.12 -2.67 8.73 22.27 0.19 -2.47 16 19 C -0.13 -2.41 10.05 22.27 0.22 -2.18 16 20 C -0.12 -2.08 10.05 22.27 0.22 -1.85 16 21 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 22 C -0.10 -2.25 9.36 22.27 0.21 -2.04 16 23 C -0.15 -2.96 5.66 31.71 0.18 -2.78 16 24 C -0.14 -2.01 7.16 32.01 0.23 -1.78 16 25 C 0.04 0.54 7.66 72.66 0.56 1.10 16 26 O -0.36 -7.50 9.32 -148.98 -1.39 -8.89 16 27 C -0.13 -5.41 5.65 30.68 0.17 -5.24 16 28 C 0.18 9.59 5.31 86.36 0.46 10.05 16 29 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 2.69 7.93 -2.39 -0.02 2.67 16 32 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.06 2.41 7.58 -2.39 -0.02 2.39 16 35 H 0.41 10.33 8.11 -92.71 -0.75 9.58 16 36 H 0.13 2.71 6.43 -2.91 -0.02 2.69 16 37 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 38 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 39 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.13 2.67 7.55 -2.91 -0.02 2.65 16 41 H 0.08 1.94 6.73 -2.39 -0.02 1.93 16 42 H 0.10 1.80 5.76 -2.39 -0.01 1.78 16 43 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 46 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 49 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 50 H 0.06 3.27 6.04 -2.39 -0.01 3.25 16 Total: -1.00 -72.35 393.56 1.93 -70.42 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.19 Total: 26.89 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 5.21 Total: 0.17 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -4.06 Total: -113.45 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -1.43 Total: -31.41 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -72.35 1.93 -70.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932217906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.667 kcal (2) G-P(sol) polarization free energy of solvation -72.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds