Wall clock time and date at job start Wed Apr 1 2020 03:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86799 * 119.99866 * 2 1 4 4 H 1.48503 * 109.47519 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47466 * 300.00136 * 3 2 1 6 6 H 1.48503 * 109.47425 * 60.00205 * 3 2 1 7 7 C 1.38816 * 120.00484 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00274 * 197.36217 * 7 2 1 9 9 N 1.36939 * 119.99845 * 17.36060 * 7 2 1 10 10 C 1.46918 * 120.63138 * 207.67362 * 9 7 2 11 11 C 1.53192 * 108.77737 * 233.62717 * 10 9 7 12 12 C 1.53041 * 109.31238 * 305.36636 * 11 10 9 13 13 N 1.46498 * 109.45829 * 181.37973 * 12 11 10 14 14 C 1.34781 * 119.99623 * 155.00001 * 13 12 11 15 15 O 1.21280 * 120.00259 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99663 * 180.27660 * 14 13 12 17 17 C 1.50704 * 109.82271 * 84.15793 * 16 14 13 18 18 C 1.38233 * 119.99879 * 90.42979 * 17 16 14 19 19 C 1.38236 * 119.99947 * 179.79303 * 18 17 16 20 20 C 1.38232 * 119.99750 * 0.43027 * 19 18 17 21 21 C 1.38228 * 120.00352 * 359.81933 * 20 19 18 22 22 C 1.38231 * 120.00231 * 270.69785 * 17 16 14 23 23 C 1.54379 * 109.83153 * 205.13596 * 16 14 13 24 24 C 1.55308 * 102.25500 * 98.15673 * 23 16 14 25 25 C 1.54943 * 100.93739 * 34.13521 * 24 23 16 26 26 O 1.43239 * 109.83504 * 323.27087 * 16 14 13 27 27 C 1.53044 * 109.53606 * 61.36421 * 12 11 10 28 28 C 1.46927 * 120.62958 * 27.69421 * 9 7 2 29 29 H 0.96996 * 120.00453 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.58960 * 113.84124 * 10 9 7 31 31 H 1.09000 * 109.70612 * 353.48792 * 10 9 7 32 32 H 1.08998 * 109.49717 * 185.41216 * 11 10 9 33 33 H 1.09010 * 109.49512 * 65.31416 * 11 10 9 34 34 H 1.08991 * 109.45960 * 301.35563 * 12 11 10 35 35 H 0.97000 * 120.00334 * 335.00404 * 13 12 11 36 36 H 1.08000 * 120.00202 * 359.97438 * 18 17 16 37 37 H 1.07998 * 120.00045 * 180.27318 * 19 18 17 38 38 H 1.08003 * 120.00298 * 179.84099 * 20 19 18 39 39 H 1.08003 * 120.00627 * 180.02562 * 21 20 19 40 40 H 1.08009 * 119.99823 * 359.97438 * 22 17 16 41 41 H 1.09000 * 110.85213 * 216.35057 * 23 16 14 42 42 H 1.09008 * 110.84723 * 339.96931 * 23 16 14 43 43 H 1.08995 * 111.12507 * 276.22170 * 24 23 16 44 44 H 1.08990 * 111.16203 * 152.07023 * 24 23 16 45 45 H 1.09005 * 110.30797 * 204.64252 * 25 24 23 46 46 H 1.09004 * 110.31214 * 82.47337 * 25 24 23 47 47 H 1.09000 * 109.50164 * 58.58865 * 27 12 11 48 48 H 1.09001 * 109.49551 * 178.68692 * 27 12 11 49 49 H 1.09005 * 109.58770 * 246.16053 * 28 9 7 50 50 H 1.09001 * 109.58806 * 6.58029 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2785 9 7 1.3724 -2.3609 -0.3549 10 6 1.8196 -3.6548 0.1785 11 6 2.0753 -4.6090 -0.9924 12 6 0.8199 -4.6885 -1.8640 13 7 1.0497 -5.6256 -2.9664 14 6 0.0062 -6.2455 -3.5524 15 8 -1.1230 -6.0271 -3.1675 16 6 0.2431 -7.2142 -4.6823 17 6 0.5719 -8.5762 -4.1272 18 6 -0.4400 -9.4858 -3.8834 19 6 -0.1380 -10.7367 -3.3783 20 6 1.1750 -11.0746 -3.1087 21 6 2.1864 -10.1632 -3.3478 22 6 1.8848 -8.9138 -3.8568 23 6 -1.0157 -7.2991 -5.5720 24 6 -0.6594 -6.3391 -6.7397 25 6 0.8687 -6.5685 -6.8530 26 8 1.3221 -6.7502 -5.5022 27 6 0.5018 -3.3029 -2.4307 28 6 0.2282 -2.3339 -1.2762 29 1 -0.4850 0.8400 -0.0004 30 1 1.0472 -4.0698 0.8260 31 1 2.7395 -3.5197 0.7474 32 1 2.3148 -5.6005 -0.6080 33 1 2.9092 -4.2381 -1.5885 34 1 -0.0192 -5.0355 -1.2613 35 1 1.9528 -5.8000 -3.2745 36 1 -1.4662 -9.2203 -4.0902 37 1 -0.9281 -11.4489 -3.1919 38 1 1.4108 -12.0509 -2.7117 39 1 3.2123 -10.4273 -3.1376 40 1 2.6750 -8.2017 -4.0437 41 1 -1.1650 -8.3152 -5.9370 42 1 -1.8955 -6.9457 -5.0340 43 1 -0.8830 -5.3045 -6.4798 44 1 -1.1695 -6.6301 -7.6578 45 1 1.3498 -5.6984 -7.2997 46 1 1.0746 -7.4608 -7.4444 47 1 1.3504 -2.9443 -3.0133 48 1 -0.3788 -3.3647 -3.0701 49 1 -0.6741 -2.6411 -0.7473 50 1 0.0986 -1.3253 -1.6685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932217910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:32 Heat of formation + Delta-G solvation = -33.969586 kcal Electronic energy + Delta-G solvation = -31197.077792 eV Core-core repulsion = 27189.495370 eV Total energy + Delta-G solvation = -4007.582422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.11169 -39.00423 -38.46796 -37.17730 -34.45379 -32.75817 -32.48693 -31.79247 -30.98343 -30.02938 -29.47819 -28.32672 -25.22352 -23.98402 -23.14608 -22.51981 -22.18437 -21.58491 -21.19694 -19.88359 -19.23639 -17.91208 -17.50452 -16.75645 -16.21386 -15.90979 -15.62684 -15.17155 -14.95461 -14.70031 -14.45062 -14.04968 -13.94081 -13.67436 -13.61110 -13.48199 -13.34672 -12.98691 -12.83363 -12.50930 -12.41044 -12.19133 -12.08786 -11.56540 -11.49442 -11.43428 -11.16086 -11.10136 -11.05984 -10.90399 -10.72143 -10.53617 -10.33685 -10.19891 -10.02636 -9.73261 -9.68392 -9.42679 -9.10556 -8.86918 -8.65512 -8.39519 -6.66805 -5.76517 -3.18969 1.06017 1.21334 2.71020 3.29776 3.33660 3.38840 3.46370 3.48566 3.64323 4.21956 4.34700 4.51279 4.63583 4.73538 4.77638 4.84014 4.91862 4.93631 5.10453 5.27611 5.33451 5.36104 5.41220 5.44207 5.47560 5.49461 5.51374 5.66555 5.72220 5.76079 5.82453 5.87190 5.88652 6.11776 6.24602 6.26967 6.28124 6.30861 6.39923 6.47416 6.61743 6.64738 6.68160 6.76854 6.80288 6.95484 6.98252 7.40194 7.69400 7.77808 7.81912 8.39886 8.46967 9.22995 9.86517 10.43225 11.32032 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.002793 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.151658 B =10021.713722 C =10766.596940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.139 4.139 12 C 0.149 3.851 13 N -0.707 5.707 14 C 0.521 3.479 15 O -0.535 6.535 16 C 0.135 3.865 17 C -0.093 4.093 18 C -0.103 4.103 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.090 4.090 23 C -0.139 4.139 24 C -0.157 4.157 25 C 0.051 3.949 26 O -0.362 6.362 27 C -0.145 4.145 28 C 0.174 3.826 29 H 0.253 0.747 30 H 0.020 0.980 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.399 0.601 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.020 0.980 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.677 -21.601 -13.636 25.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.022 3.978 11 C -0.178 4.178 12 C 0.046 3.954 13 N -0.356 5.356 14 C 0.305 3.695 15 O -0.412 6.412 16 C 0.092 3.908 17 C -0.093 4.093 18 C -0.121 4.121 19 C -0.141 4.141 20 C -0.134 4.134 21 C -0.141 4.141 22 C -0.108 4.108 23 C -0.177 4.177 24 C -0.195 4.195 25 C -0.025 4.025 26 O -0.281 6.281 27 C -0.185 4.185 28 C 0.048 3.952 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.233 0.767 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.105 0.895 42 H 0.124 0.876 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.038 0.962 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.983 -21.230 -13.247 25.043 hybrid contribution 0.679 0.714 -0.277 1.023 sum 1.661 -20.516 -13.524 24.629 Atomic orbital electron populations 1.70045 1.05264 1.25402 1.53828 1.25049 0.95272 0.98435 1.00943 0.86240 0.79355 0.84012 0.77253 1.20262 1.21593 1.21743 1.19221 0.92714 0.84852 1.41439 0.91586 1.44110 1.35877 1.01376 1.50181 1.20829 0.97944 0.86723 0.92311 1.22333 0.96732 0.99715 0.99066 1.21079 0.98723 0.88920 0.86656 1.46228 1.09422 1.44159 1.35770 1.20236 0.85358 0.80603 0.83304 1.90702 1.22523 1.63915 1.64053 1.20954 0.88577 0.90424 0.90815 1.19724 0.94331 0.93916 1.01368 1.21065 0.99077 0.93277 0.98641 1.21115 0.96717 0.96497 0.99735 1.21205 0.93060 0.99542 0.99607 1.21164 0.99450 0.93836 0.99651 1.21004 0.95951 0.96724 0.97120 1.23216 0.97780 1.01022 0.95661 1.23297 0.95979 1.01074 0.99107 1.23458 0.94113 1.01339 0.83579 1.88405 1.33282 1.86672 1.19776 1.22548 1.00403 0.95077 1.00473 1.20760 0.88620 0.98197 0.87658 0.93661 0.96247 0.92338 0.92657 0.91801 0.90133 0.76660 0.85558 0.85846 0.86050 0.85838 0.85380 0.89508 0.87587 0.89893 0.89418 0.89149 0.91818 0.92629 0.92996 0.96200 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 11.19 55.49 0.62 -25.92 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.25 -6.98 9.59 -15.06 -0.14 -7.12 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -15.04 2.99 -172.32 -0.52 -15.56 16 10 C 0.15 3.14 6.51 -3.71 -0.02 3.12 16 11 C -0.14 -2.41 5.55 -26.61 -0.15 -2.56 16 12 C 0.15 2.73 2.42 -67.89 -0.16 2.57 16 13 N -0.71 -10.99 4.99 -53.77 -0.27 -11.25 16 14 C 0.52 8.26 6.70 -10.98 -0.07 8.18 16 15 O -0.53 -10.20 15.23 5.56 0.08 -10.12 16 16 C 0.14 1.66 0.98 -92.20 -0.09 1.57 16 17 C -0.09 -1.08 4.80 -104.62 -0.50 -1.58 16 18 C -0.10 -1.10 8.75 -39.58 -0.35 -1.45 16 19 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 20 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 21 C -0.12 -1.16 10.05 -39.59 -0.40 -1.55 16 22 C -0.09 -0.97 9.36 -39.58 -0.37 -1.34 16 23 C -0.14 -1.46 4.99 -24.78 -0.12 -1.59 16 24 C -0.16 -1.41 7.16 -24.48 -0.18 -1.59 16 25 C 0.05 0.46 7.78 38.18 0.30 0.76 16 26 O -0.36 -4.21 9.11 -35.23 -0.32 -4.53 16 27 C -0.14 -2.98 5.65 -26.61 -0.15 -3.13 16 28 C 0.17 4.31 5.31 -3.71 -0.02 4.29 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 1.18 7.94 -51.93 -0.41 0.77 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 34 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 35 H 0.40 5.46 8.10 -40.82 -0.33 5.13 16 36 H 0.13 1.25 6.85 -52.49 -0.36 0.89 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.13 1.31 7.54 -52.48 -0.40 0.92 16 41 H 0.09 0.75 6.89 -51.93 -0.36 0.40 16 42 H 0.11 1.28 6.76 -51.92 -0.35 0.93 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -32.29 394.49 -10.76 -43.04 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -7.96 Total: 6.03 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -3.31 Total: -4.43 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.16 Total: -52.73 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.24 Total: -14.65 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.29 -10.76 -43.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932217910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.074 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds