Wall clock time and date at job start Wed Apr 1 2020 02:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46913 * 274.98731 * 3 2 1 5 5 H 1.48497 * 109.47076 * 34.98891 * 3 2 1 6 6 H 1.48498 * 109.47049 * 154.99136 * 3 2 1 7 7 C 1.38820 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99769 * 158.69536 * 7 2 1 9 9 N 1.36937 * 119.99954 * 338.69393 * 7 2 1 10 10 C 1.47236 * 121.34222 * 331.34547 * 9 7 2 11 11 C 1.52791 * 107.87854 * 115.67712 * 10 9 7 12 12 C 1.50599 * 110.85027 * 47.47443 * 11 10 9 13 13 C 1.38980 * 117.60748 * 160.41396 * 12 11 10 14 14 C 1.37908 * 120.58346 * 179.38165 * 13 12 11 15 15 C 1.38264 * 119.82363 * 0.02562 * 14 13 12 16 16 C 1.37960 * 119.72030 * 0.20015 * 15 14 13 17 17 C 1.37671 * 122.87035 * 340.17641 * 12 11 10 18 18 C 1.46689 * 121.33851 * 151.34758 * 9 7 2 19 19 H 1.09000 * 109.40016 * 104.24566 * 18 9 7 20 20 C 1.52993 * 109.43648 * 344.34670 * 18 9 7 21 21 N 1.46503 * 109.47475 * 304.75853 * 20 18 9 22 22 C 1.34778 * 119.99911 * 174.61919 * 21 20 18 23 23 O 1.21274 * 120.00149 * 4.87892 * 22 21 20 24 24 C 1.50698 * 119.99683 * 184.88120 * 22 21 20 25 25 H 1.09006 * 109.52511 * 42.78732 * 24 22 21 26 26 C 1.53181 * 109.52167 * 162.90868 * 24 22 21 27 27 C 1.53190 * 109.03157 * 176.82435 * 26 24 22 28 28 C 1.53087 * 109.21211 * 303.11561 * 27 26 24 29 29 O 1.42901 * 109.41914 * 57.57603 * 28 27 26 30 30 C 1.42904 * 114.09973 * 298.84151 * 29 28 27 31 31 H 0.97001 * 119.99325 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.78118 * 356.07811 * 10 9 7 33 33 H 1.09001 * 109.82593 * 235.29564 * 10 9 7 34 34 H 1.08999 * 109.20456 * 287.11892 * 11 10 9 35 35 H 1.09008 * 109.19769 * 167.82581 * 11 10 9 36 36 H 1.08003 * 119.71011 * 359.36651 * 13 12 11 37 37 H 1.08003 * 120.09009 * 180.02562 * 14 13 12 38 38 H 1.07998 * 120.14481 * 180.21876 * 15 14 13 39 39 H 1.07999 * 119.75120 * 179.97438 * 16 15 14 40 40 H 1.09005 * 109.46941 * 184.75651 * 20 18 9 41 41 H 1.09000 * 109.47113 * 64.76233 * 20 18 9 42 42 H 0.97000 * 119.99947 * 354.62122 * 21 20 18 43 43 H 1.09001 * 109.54253 * 296.75574 * 26 24 22 44 44 H 1.09000 * 109.54157 * 57.02120 * 26 24 22 45 45 H 1.08995 * 109.52411 * 183.17494 * 27 26 24 46 46 H 1.09003 * 109.51754 * 63.04912 * 27 26 24 47 47 H 1.09004 * 109.48434 * 297.58939 * 28 27 26 48 48 H 1.09002 * 109.48171 * 177.56064 * 28 27 26 49 49 H 1.09002 * 109.47583 * 301.17562 * 30 29 28 50 50 H 1.08997 * 109.48469 * 181.13799 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4119 0.5919 7 6 2.0102 -1.2022 0.0005 8 1 3.0348 -1.2344 -0.3393 9 7 1.3956 -2.3474 0.4320 10 6 0.3187 -2.3073 1.4352 11 6 -0.9623 -2.8063 0.7685 12 6 -0.7083 -4.0792 0.0048 13 6 -1.8050 -4.8758 -0.3021 14 6 -1.6444 -6.0482 -1.0104 15 6 -0.3822 -6.4370 -1.4195 16 6 0.7089 -5.6506 -1.1122 17 6 0.5487 -4.4715 -0.3967 18 6 1.7838 -3.6634 -0.0868 19 1 2.3807 -4.1857 0.6609 20 6 2.6087 -3.4846 -1.3628 21 7 1.8508 -2.6820 -2.3260 22 6 2.4234 -2.3026 -3.4855 23 8 3.5334 -2.6985 -3.7717 24 6 1.6845 -1.3863 -4.4264 25 1 1.2024 -0.5914 -3.8572 26 6 2.6714 -0.7742 -5.4253 27 6 1.8981 0.0919 -6.4246 28 6 0.8297 -0.7630 -7.1110 29 8 -0.0357 -1.3258 -6.1228 30 6 0.6242 -2.1841 -5.1900 31 1 -0.4849 0.8401 -0.0004 32 1 0.1783 -1.2846 1.7850 33 1 0.5725 -2.9529 2.2760 34 1 -1.3297 -2.0435 0.0819 35 1 -1.7160 -2.9916 1.5339 36 1 -2.7918 -4.5742 0.0170 37 1 -2.5023 -6.6610 -1.2449 38 1 -0.2509 -7.3523 -1.9774 39 1 1.6951 -5.9540 -1.4311 40 1 2.8258 -4.4615 -1.7950 41 1 3.5434 -2.9776 -1.1232 42 1 0.9368 -2.4236 -2.1291 43 1 3.3956 -0.1586 -4.8917 44 1 3.1905 -1.5702 -5.9593 45 1 2.5854 0.4863 -7.1731 46 1 1.4205 0.9178 -5.8975 47 1 1.3104 -1.5644 -7.6721 48 1 0.2482 -0.1409 -7.7915 49 1 1.1023 -3.0040 -5.7260 50 1 -0.1052 -2.5856 -4.4866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948899342.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:27 Heat of formation + Delta-G solvation = -41.930811 kcal Electronic energy + Delta-G solvation = -32367.821719 eV Core-core repulsion = 28359.894072 eV Total energy + Delta-G solvation = -4007.927647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.02810 -39.41549 -38.09567 -36.29262 -34.14200 -33.36343 -32.31546 -32.03530 -31.00353 -29.93842 -28.75153 -26.56114 -25.12243 -24.73407 -23.82791 -22.52584 -22.05618 -21.04206 -20.32423 -19.43618 -18.89003 -17.06550 -16.64907 -16.15561 -15.93128 -15.87808 -15.45410 -15.13630 -14.80671 -14.53663 -14.26539 -13.94323 -13.92315 -13.54855 -13.39263 -13.15014 -13.01510 -12.90500 -12.57345 -12.43775 -12.32117 -12.04167 -11.65336 -11.48167 -11.27763 -11.18195 -11.08379 -10.96708 -10.85993 -10.81767 -10.69198 -10.46069 -10.28238 -10.13740 -9.79645 -9.57413 -9.54372 -9.12128 -8.60862 -8.28873 -8.19903 -7.95532 -6.82274 -5.95102 -3.35741 1.83590 1.90050 3.20912 3.29624 3.38670 3.42307 3.77274 4.06377 4.24785 4.38097 4.83568 4.96218 5.01035 5.09820 5.15568 5.20885 5.27287 5.33949 5.35899 5.42290 5.45528 5.51801 5.53666 5.67972 5.72202 5.80992 5.86540 5.89808 5.98530 6.02774 6.07726 6.22778 6.28126 6.29218 6.31387 6.43082 6.44060 6.45363 6.57332 6.63830 6.69937 6.92893 6.96848 7.20587 7.21032 7.28431 7.30456 7.47522 7.56609 7.74441 8.25306 8.31781 8.91072 9.04045 9.65564 10.24893 11.12225 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008281 B = 0.005634 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.283270 B = 4968.221033 C = 6823.623746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.013 3.987 3 Si 0.891 3.109 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.066 0.934 9 N -0.584 5.584 10 C 0.168 3.832 11 C -0.098 4.098 12 C -0.042 4.042 13 C -0.134 4.134 14 C -0.128 4.128 15 C -0.139 4.139 16 C -0.118 4.118 17 C -0.089 4.089 18 C 0.192 3.808 19 H 0.053 0.947 20 C 0.137 3.863 21 N -0.682 5.682 22 C 0.519 3.481 23 O -0.566 6.566 24 C -0.143 4.143 25 H 0.106 0.894 26 C -0.100 4.100 27 C -0.157 4.157 28 C 0.059 3.941 29 O -0.378 6.378 30 C 0.078 3.922 31 H 0.254 0.746 32 H 0.088 0.912 33 H 0.007 0.993 34 H 0.104 0.896 35 H 0.047 0.953 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.413 0.587 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.049 0.951 48 H 0.091 0.909 49 H 0.053 0.947 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.041 -6.164 -6.675 9.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.186 4.186 3 Si 0.721 3.279 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.084 0.916 9 N -0.307 5.307 10 C 0.043 3.957 11 C -0.137 4.137 12 C -0.043 4.043 13 C -0.152 4.152 14 C -0.146 4.146 15 C -0.157 4.157 16 C -0.136 4.136 17 C -0.090 4.090 18 C 0.085 3.915 19 H 0.070 0.930 20 C 0.013 3.987 21 N -0.331 5.331 22 C 0.305 3.695 23 O -0.446 6.446 24 C -0.164 4.164 25 H 0.124 0.876 26 C -0.138 4.138 27 C -0.194 4.194 28 C -0.018 4.018 29 O -0.296 6.296 30 C 0.001 3.999 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.026 0.974 34 H 0.122 0.878 35 H 0.066 0.934 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.250 0.750 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.067 0.933 48 H 0.110 0.890 49 H 0.071 0.929 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.549 -6.228 -6.819 9.364 hybrid contribution 0.127 0.991 0.126 1.007 sum -1.422 -5.237 -6.694 8.617 Atomic orbital electron populations 1.69973 1.05056 1.25626 1.52719 1.24901 0.95062 0.98093 1.00569 0.86462 0.79606 0.84166 0.77672 1.21528 1.21563 1.20501 1.18949 0.94128 0.84704 1.39749 0.91598 1.44177 1.42157 1.00213 1.44156 1.20715 0.85774 1.00410 0.88804 1.21018 0.99801 0.93792 0.99059 1.19859 0.91808 0.95975 0.96623 1.21202 0.98384 0.95320 1.00287 1.20908 0.96864 0.97150 0.99710 1.20884 0.93062 0.99852 1.01872 1.21113 0.98489 0.94815 0.99215 1.20385 0.95946 0.95042 0.97668 1.19836 0.90802 0.87913 0.92943 0.92999 1.21343 0.95221 0.94019 0.88149 1.45692 1.18002 1.52579 1.16866 1.20146 0.86300 0.80832 0.82265 1.90611 1.20599 1.57235 1.76149 1.21935 0.97866 0.99476 0.97142 0.87582 1.21376 0.96949 0.99347 0.96151 1.22223 0.98488 0.99368 0.99351 1.22591 0.92457 0.96330 0.90406 1.87958 1.34609 1.64519 1.42508 1.22438 0.94815 0.91257 0.91405 0.93557 0.89342 0.97448 0.87801 0.93407 0.86968 0.87147 0.87093 0.86763 0.92702 0.91240 0.75027 0.91078 0.90932 0.90816 0.90879 0.93286 0.89038 0.92896 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.08 10.36 55.49 0.57 -21.51 16 2 C 0.01 0.33 4.83 -17.43 -0.08 0.25 16 3 Si 0.89 20.42 29.60 -169.99 -5.03 15.38 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.25 -5.88 7.35 -15.06 -0.11 -5.99 16 8 H 0.07 1.66 6.62 -52.49 -0.35 1.31 16 9 N -0.58 -12.62 2.71 -166.31 -0.45 -13.07 16 10 C 0.17 3.55 5.59 -3.75 -0.02 3.53 16 11 C -0.10 -1.89 5.77 -28.04 -0.16 -2.05 16 12 C -0.04 -0.76 5.76 -104.60 -0.60 -1.37 16 13 C -0.13 -2.13 9.59 -39.43 -0.38 -2.51 16 14 C -0.13 -1.85 10.04 -39.69 -0.40 -2.24 16 15 C -0.14 -1.99 10.05 -39.67 -0.40 -2.39 16 16 C -0.12 -1.85 9.03 -39.46 -0.36 -2.21 16 17 C -0.09 -1.57 4.88 -104.55 -0.51 -2.08 16 18 C 0.19 3.62 3.17 -68.93 -0.22 3.41 16 19 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 20 C 0.14 2.55 4.37 -4.04 -0.02 2.53 16 21 N -0.68 -13.00 4.09 -60.30 -0.25 -13.25 16 22 C 0.52 9.88 7.02 -10.99 -0.08 9.80 16 23 O -0.57 -12.05 15.96 5.56 0.09 -11.96 16 24 C -0.14 -2.37 2.72 -91.63 -0.25 -2.61 16 25 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 26 C -0.10 -1.50 4.81 -26.54 -0.13 -1.63 16 27 C -0.16 -1.93 6.13 -26.59 -0.16 -2.09 16 28 C 0.06 0.70 6.84 37.20 0.25 0.96 16 29 O -0.38 -5.65 10.77 -35.23 -0.38 -6.03 16 30 C 0.08 1.17 6.11 37.21 0.23 1.40 16 31 H 0.25 6.31 8.31 -40.82 -0.34 5.98 16 32 H 0.09 2.07 6.20 -51.93 -0.32 1.75 16 33 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.10 2.27 7.00 -51.93 -0.36 1.90 16 35 H 0.05 0.83 8.11 -51.92 -0.42 0.41 16 36 H 0.11 1.61 8.05 -52.48 -0.42 1.19 16 37 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 38 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.11 1.65 6.66 -52.49 -0.35 1.30 16 40 H 0.05 0.94 6.45 -51.93 -0.34 0.61 16 41 H 0.07 1.41 7.06 -51.93 -0.37 1.04 16 42 H 0.41 8.41 7.65 -40.82 -0.31 8.09 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.09 7.82 -51.93 -0.41 0.69 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 386.36 15.07 5.82 5.82 Total: -1.00 -26.43 386.36 -10.87 -37.30 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -7.85 Total: 12.61 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -3.39 Total: -5.29 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: -0.12 Total: -47.83 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.29 Total: -18.00 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -26.43 -10.87 -37.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948899342.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.627 kcal (2) G-P(sol) polarization free energy of solvation -26.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds