Wall clock time and date at job start Wed Apr 1 2020 02:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46913 * 274.98731 * 3 2 1 5 5 H 1.48497 * 109.47076 * 34.98891 * 3 2 1 6 6 H 1.48498 * 109.47049 * 154.99136 * 3 2 1 7 7 C 1.38820 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99769 * 158.69536 * 7 2 1 9 9 N 1.36937 * 119.99954 * 338.69393 * 7 2 1 10 10 C 1.47236 * 121.34222 * 331.34547 * 9 7 2 11 11 C 1.52791 * 107.87854 * 115.67712 * 10 9 7 12 12 C 1.50599 * 110.85027 * 47.47443 * 11 10 9 13 13 C 1.38980 * 117.60748 * 160.41396 * 12 11 10 14 14 C 1.37908 * 120.58346 * 179.38165 * 13 12 11 15 15 C 1.38264 * 119.82363 * 0.02562 * 14 13 12 16 16 C 1.37960 * 119.72030 * 0.20015 * 15 14 13 17 17 C 1.37671 * 122.87035 * 340.17641 * 12 11 10 18 18 C 1.46689 * 121.33851 * 151.34758 * 9 7 2 19 19 H 1.09000 * 109.40016 * 104.24566 * 18 9 7 20 20 C 1.52993 * 109.43648 * 344.34670 * 18 9 7 21 21 N 1.46503 * 109.47475 * 304.75853 * 20 18 9 22 22 C 1.34778 * 119.99911 * 174.61919 * 21 20 18 23 23 O 1.21274 * 120.00149 * 4.87892 * 22 21 20 24 24 C 1.50698 * 119.99683 * 184.88120 * 22 21 20 25 25 H 1.09006 * 109.52511 * 42.78732 * 24 22 21 26 26 C 1.53181 * 109.52167 * 162.90868 * 24 22 21 27 27 C 1.53190 * 109.03157 * 176.82435 * 26 24 22 28 28 C 1.53087 * 109.21211 * 303.11561 * 27 26 24 29 29 O 1.42901 * 109.41914 * 57.57603 * 28 27 26 30 30 C 1.42904 * 114.09973 * 298.84151 * 29 28 27 31 31 H 0.97001 * 119.99325 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.78118 * 356.07811 * 10 9 7 33 33 H 1.09001 * 109.82593 * 235.29564 * 10 9 7 34 34 H 1.08999 * 109.20456 * 287.11892 * 11 10 9 35 35 H 1.09008 * 109.19769 * 167.82581 * 11 10 9 36 36 H 1.08003 * 119.71011 * 359.36651 * 13 12 11 37 37 H 1.08003 * 120.09009 * 180.02562 * 14 13 12 38 38 H 1.07998 * 120.14481 * 180.21876 * 15 14 13 39 39 H 1.07999 * 119.75120 * 179.97438 * 16 15 14 40 40 H 1.09005 * 109.46941 * 184.75651 * 20 18 9 41 41 H 1.09000 * 109.47113 * 64.76233 * 20 18 9 42 42 H 0.97000 * 119.99947 * 354.62122 * 21 20 18 43 43 H 1.09001 * 109.54253 * 296.75574 * 26 24 22 44 44 H 1.09000 * 109.54157 * 57.02120 * 26 24 22 45 45 H 1.08995 * 109.52411 * 183.17494 * 27 26 24 46 46 H 1.09003 * 109.51754 * 63.04912 * 27 26 24 47 47 H 1.09004 * 109.48434 * 297.58939 * 28 27 26 48 48 H 1.09002 * 109.48171 * 177.56064 * 28 27 26 49 49 H 1.09002 * 109.47583 * 301.17562 * 30 29 28 50 50 H 1.08997 * 109.48469 * 181.13799 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4119 0.5919 7 6 2.0102 -1.2022 0.0005 8 1 3.0348 -1.2344 -0.3393 9 7 1.3956 -2.3474 0.4320 10 6 0.3187 -2.3073 1.4352 11 6 -0.9623 -2.8063 0.7685 12 6 -0.7083 -4.0792 0.0048 13 6 -1.8050 -4.8758 -0.3021 14 6 -1.6444 -6.0482 -1.0104 15 6 -0.3822 -6.4370 -1.4195 16 6 0.7089 -5.6506 -1.1122 17 6 0.5487 -4.4715 -0.3967 18 6 1.7838 -3.6634 -0.0868 19 1 2.3807 -4.1857 0.6609 20 6 2.6087 -3.4846 -1.3628 21 7 1.8508 -2.6820 -2.3260 22 6 2.4234 -2.3026 -3.4855 23 8 3.5334 -2.6985 -3.7717 24 6 1.6845 -1.3863 -4.4264 25 1 1.2024 -0.5914 -3.8572 26 6 2.6714 -0.7742 -5.4253 27 6 1.8981 0.0919 -6.4246 28 6 0.8297 -0.7630 -7.1110 29 8 -0.0357 -1.3258 -6.1228 30 6 0.6242 -2.1841 -5.1900 31 1 -0.4849 0.8401 -0.0004 32 1 0.1783 -1.2846 1.7850 33 1 0.5725 -2.9529 2.2760 34 1 -1.3297 -2.0435 0.0819 35 1 -1.7160 -2.9916 1.5339 36 1 -2.7918 -4.5742 0.0170 37 1 -2.5023 -6.6610 -1.2449 38 1 -0.2509 -7.3523 -1.9774 39 1 1.6951 -5.9540 -1.4311 40 1 2.8258 -4.4615 -1.7950 41 1 3.5434 -2.9776 -1.1232 42 1 0.9368 -2.4236 -2.1291 43 1 3.3956 -0.1586 -4.8917 44 1 3.1905 -1.5702 -5.9593 45 1 2.5854 0.4863 -7.1731 46 1 1.4205 0.9178 -5.8975 47 1 1.3104 -1.5644 -7.6721 48 1 0.2482 -0.1409 -7.7915 49 1 1.1023 -3.0040 -5.7260 50 1 -0.1052 -2.5856 -4.4866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948899342.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:26 Heat of formation + Delta-G solvation = -55.047807 kcal Electronic energy + Delta-G solvation = -32368.390515 eV Core-core repulsion = 28359.894072 eV Total energy + Delta-G solvation = -4008.496443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.43346 -40.71677 -39.41419 -37.79969 -35.70631 -34.59859 -33.99695 -33.42615 -32.20229 -31.48628 -30.13290 -28.10410 -26.63008 -25.96930 -25.12231 -23.94377 -23.55004 -22.33467 -21.67983 -20.81349 -20.39545 -18.60578 -18.20426 -17.43414 -17.31000 -17.15594 -16.91864 -16.49935 -16.13107 -15.95619 -15.75405 -15.35174 -15.31864 -15.08504 -14.71044 -14.58151 -14.41829 -14.31238 -13.88600 -13.77177 -13.61488 -13.46899 -13.23011 -12.98106 -12.79245 -12.71698 -12.54558 -12.54136 -12.21285 -12.15118 -12.12565 -11.91877 -11.79342 -11.42982 -11.38993 -11.16663 -10.85243 -10.48422 -10.45529 -9.78323 -9.52278 -9.26236 -8.60951 -7.84647 -5.24767 0.61517 0.66097 1.40330 1.47604 1.52805 1.68578 2.37860 2.51191 2.90438 3.00991 3.31567 3.53596 3.62560 3.78236 3.84473 3.96356 3.98383 4.03178 4.13271 4.20792 4.25908 4.30740 4.35193 4.43140 4.58806 4.60475 4.65471 4.66050 4.74998 4.78860 4.80089 4.83428 4.89329 4.97399 4.99637 5.02609 5.08468 5.09544 5.27498 5.29137 5.31308 5.53792 5.64304 5.68858 5.74299 5.75230 5.90036 6.03808 6.14231 6.29143 6.41154 6.73585 7.17629 7.34731 7.83110 8.40839 9.19634 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008281 B = 0.005634 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.283270 B = 4968.221033 C = 6823.623746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.018 4.018 3 Si 0.929 3.071 4 H -0.294 1.294 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.237 4.237 8 H 0.050 0.950 9 N -0.594 5.594 10 C 0.170 3.830 11 C -0.085 4.085 12 C -0.066 4.066 13 C -0.138 4.138 14 C -0.122 4.122 15 C -0.132 4.132 16 C -0.122 4.122 17 C -0.101 4.101 18 C 0.194 3.806 19 H 0.056 0.944 20 C 0.143 3.857 21 N -0.680 5.680 22 C 0.517 3.483 23 O -0.590 6.590 24 C -0.138 4.138 25 H 0.085 0.915 26 C -0.099 4.099 27 C -0.150 4.150 28 C 0.053 3.947 29 O -0.393 6.393 30 C 0.087 3.913 31 H 0.249 0.751 32 H 0.060 0.940 33 H 0.015 0.985 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.125 0.875 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.126 0.874 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.407 0.593 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.116 0.884 49 H 0.063 0.937 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 -8.122 -8.345 12.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.216 4.216 3 Si 0.760 3.240 4 H -0.222 1.222 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.367 4.367 8 H 0.068 0.932 9 N -0.317 5.317 10 C 0.045 3.955 11 C -0.123 4.123 12 C -0.066 4.066 13 C -0.156 4.156 14 C -0.140 4.140 15 C -0.150 4.150 16 C -0.141 4.141 17 C -0.103 4.103 18 C 0.087 3.913 19 H 0.073 0.927 20 C 0.018 3.982 21 N -0.328 5.328 22 C 0.303 3.697 23 O -0.472 6.472 24 C -0.160 4.160 25 H 0.103 0.897 26 C -0.137 4.137 27 C -0.188 4.188 28 C -0.023 4.023 29 O -0.311 6.311 30 C 0.010 3.990 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.143 0.857 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.144 0.856 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.243 0.757 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.119 0.881 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.134 0.866 49 H 0.082 0.918 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.460 -8.198 -8.483 12.051 hybrid contribution 0.445 1.526 0.662 1.721 sum -2.015 -6.672 -7.822 10.477 Atomic orbital electron populations 1.70062 1.05324 1.25253 1.53732 1.25221 0.95535 0.99379 1.01481 0.85873 0.78566 0.82609 0.76944 1.22175 1.21866 1.21070 1.18814 0.93408 0.85745 1.38712 0.93238 1.44212 1.42199 1.00714 1.44593 1.20628 0.86811 0.98956 0.89134 1.20747 0.98803 0.93964 0.98792 1.19807 0.92863 0.96006 0.97964 1.21375 0.98253 0.95641 1.00343 1.21283 0.98076 0.96500 0.98144 1.21264 0.92451 1.00367 1.00874 1.21254 0.99793 0.94224 0.98787 1.20200 0.94972 0.95955 0.99167 1.19834 0.91796 0.86740 0.92901 0.92671 1.21295 0.94117 0.94477 0.88301 1.45717 1.17621 1.52504 1.16952 1.20566 0.86050 0.80661 0.82381 1.90589 1.21591 1.58331 1.76693 1.21912 0.98475 0.98564 0.97007 0.89664 1.21383 0.96585 0.99508 0.96255 1.22209 0.98834 0.98595 0.99156 1.22858 0.92456 0.97000 0.89984 1.87942 1.35597 1.64630 1.42957 1.22315 0.94061 0.91212 0.91434 0.94179 0.92167 0.96719 0.90762 0.91979 0.85675 0.83957 0.83999 0.85633 0.90839 0.93493 0.75694 0.92689 0.90803 0.88096 0.91837 0.91746 0.86557 0.91838 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.07 10.36 21.65 0.22 -45.84 16 2 C -0.02 -0.91 4.83 84.86 0.41 -0.50 16 3 Si 0.93 43.13 29.60 68.60 2.03 45.16 16 4 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 7 C -0.24 -11.67 7.35 84.04 0.62 -11.05 16 8 H 0.05 2.59 6.62 -2.91 -0.02 2.57 16 9 N -0.59 -26.30 2.71 -680.10 -1.84 -28.14 16 10 C 0.17 7.33 5.59 86.17 0.48 7.82 16 11 C -0.08 -3.28 5.77 29.75 0.17 -3.11 16 12 C -0.07 -2.32 5.76 -19.85 -0.11 -2.44 16 13 C -0.14 -4.07 9.59 22.37 0.21 -3.85 16 14 C -0.12 -3.04 10.04 22.20 0.22 -2.82 16 15 C -0.13 -3.27 10.05 22.21 0.22 -3.04 16 16 C -0.12 -3.54 9.03 22.35 0.20 -3.33 16 17 C -0.10 -3.48 4.88 -19.82 -0.10 -3.58 16 18 C 0.19 7.34 3.17 44.24 0.14 7.48 16 19 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 20 C 0.14 5.35 4.37 86.38 0.38 5.73 16 21 N -0.68 -26.37 4.09 -463.07 -1.89 -28.27 16 22 C 0.52 19.94 7.02 87.66 0.61 20.55 16 23 O -0.59 -25.34 15.96 -3.01 -0.05 -25.39 16 24 C -0.14 -4.61 2.72 -11.45 -0.03 -4.64 16 25 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 26 C -0.10 -2.94 4.81 30.72 0.15 -2.79 16 27 C -0.15 -3.45 6.13 30.69 0.19 -3.26 16 28 C 0.05 1.13 6.84 72.01 0.49 1.63 16 29 O -0.39 -11.15 10.77 -148.98 -1.60 -12.75 16 30 C 0.09 2.54 6.11 72.01 0.44 2.98 16 31 H 0.25 12.73 8.31 -92.71 -0.77 11.96 16 32 H 0.06 2.93 6.20 -2.39 -0.01 2.91 16 33 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 3.33 7.00 -2.39 -0.02 3.31 16 35 H 0.06 2.15 8.11 -2.38 -0.02 2.13 16 36 H 0.13 3.29 8.05 -2.91 -0.02 3.26 16 37 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 38 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.13 3.29 6.66 -2.91 -0.02 3.27 16 40 H 0.07 2.47 6.45 -2.38 -0.02 2.46 16 41 H 0.05 1.96 7.06 -2.39 -0.02 1.95 16 42 H 0.41 16.98 7.65 -92.71 -0.71 16.27 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.07 2.16 7.82 -2.39 -0.02 2.14 16 45 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 48 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -58.00 386.36 1.81 -56.19 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: 0.24 Total: 37.27 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 4.70 Total: 1.76 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -3.51 Total: -102.25 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -1.65 Total: -38.14 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -58.00 1.81 -56.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948899342.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.147 kcal (2) G-P(sol) polarization free energy of solvation -58.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds