Wall clock time and date at job start Wed Apr 1 2020 02:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00264 * 2 1 4 4 H 1.48501 * 109.47402 * 268.48185 * 3 2 1 5 5 H 1.48503 * 109.46535 * 28.47671 * 3 2 1 6 6 H 1.48492 * 109.47129 * 148.47460 * 3 2 1 7 7 C 1.38818 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99710 * 30.96358 * 7 2 1 9 9 N 1.36936 * 119.99962 * 210.96079 * 7 2 1 10 10 C 1.47223 * 121.31458 * 42.14551 * 9 7 2 11 11 C 1.52781 * 107.93282 * 115.93104 * 10 9 7 12 12 C 1.50592 * 110.85339 * 47.53509 * 11 10 9 13 13 C 1.38976 * 117.63091 * 160.02280 * 12 11 10 14 14 C 1.37913 * 120.57758 * 178.80837 * 13 12 11 15 15 C 1.38264 * 119.82668 * 359.97438 * 14 13 12 16 16 C 1.37960 * 119.72082 * 0.28140 * 15 14 13 17 17 C 1.37662 * 122.84738 * 339.34967 * 12 11 10 18 18 C 1.46674 * 121.31689 * 222.16556 * 9 7 2 19 19 H 1.08999 * 109.43743 * 104.38405 * 18 9 7 20 20 C 1.52995 * 109.43724 * 344.50951 * 18 9 7 21 21 N 1.46501 * 109.47234 * 60.65669 * 20 18 9 22 22 C 1.34775 * 120.00142 * 185.80317 * 21 20 18 23 23 O 1.21279 * 120.00020 * 359.97438 * 22 21 20 24 24 C 1.50699 * 120.00091 * 180.02562 * 22 21 20 25 25 H 1.09004 * 109.48238 * 305.02470 * 24 22 21 26 26 C 1.53091 * 109.48129 * 65.05546 * 24 22 21 27 27 C 1.53176 * 109.16612 * 177.59422 * 26 24 22 28 28 C 1.53176 * 109.03469 * 303.01768 * 27 26 24 29 29 C 1.53094 * 109.16157 * 56.98158 * 28 27 26 30 30 O 1.42898 * 109.48202 * 185.00146 * 24 22 21 31 31 H 0.96995 * 120.00286 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.76724 * 356.32009 * 10 9 7 33 33 H 1.09000 * 109.76710 * 235.53842 * 10 9 7 34 34 H 1.08999 * 109.20307 * 287.17766 * 11 10 9 35 35 H 1.09000 * 109.16378 * 167.86545 * 11 10 9 36 36 H 1.08003 * 119.71418 * 358.78589 * 13 12 11 37 37 H 1.07999 * 120.08513 * 180.02562 * 14 13 12 38 38 H 1.07996 * 120.13605 * 180.25779 * 15 14 13 39 39 H 1.07993 * 119.74914 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.47487 * 180.65860 * 20 18 9 41 41 H 1.09001 * 109.47034 * 300.65776 * 20 18 9 42 42 H 0.97003 * 119.99554 * 5.80623 * 21 20 18 43 43 H 1.09007 * 109.52297 * 297.50333 * 26 24 22 44 44 H 1.08999 * 109.52326 * 57.68740 * 26 24 22 45 45 H 1.09005 * 109.54547 * 183.15424 * 27 26 24 46 46 H 1.08998 * 109.54224 * 62.88932 * 27 26 24 47 47 H 1.08999 * 109.52975 * 297.07792 * 28 27 26 48 48 H 1.08999 * 109.52628 * 176.88323 * 28 27 26 49 49 H 1.09004 * 109.48210 * 182.40694 * 29 28 27 50 50 H 1.08999 * 109.48978 * 62.37574 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5299 2.0279 -1.3996 5 1 1.4319 2.6617 0.6676 6 1 3.5312 1.4496 0.7320 7 6 2.0103 -1.2022 -0.0005 8 1 1.5857 -2.0706 -0.4821 9 7 3.2333 -1.2869 0.6095 10 6 3.4831 -0.6525 1.9143 11 6 3.7842 -1.7580 2.9250 12 6 4.7917 -2.7307 2.3713 13 6 5.4841 -3.5264 3.2762 14 6 6.4029 -4.4550 2.8341 15 6 6.6387 -4.5979 1.4792 16 6 5.9568 -3.8056 0.5790 17 6 5.0363 -2.8661 1.0234 18 6 4.3463 -2.0130 -0.0113 19 1 5.0581 -1.2996 -0.4265 20 6 3.8096 -2.9061 -1.1317 21 7 3.1573 -2.0762 -2.1476 22 6 2.5054 -2.6563 -3.1747 23 8 2.4593 -3.8654 -3.2583 24 6 1.8349 -1.8027 -4.2201 25 1 1.1414 -1.1143 -3.7371 26 6 2.8948 -1.0064 -4.9858 27 6 2.2116 -0.1876 -6.0853 28 6 1.4244 -1.1339 -6.9969 29 6 0.4213 -1.9252 -6.1536 30 8 1.1191 -2.6392 -5.1311 31 1 -0.4850 0.8400 0.0004 32 1 2.6002 -0.0959 2.2287 33 1 4.3369 0.0209 1.8393 34 1 2.8624 -2.2907 3.1588 35 1 4.1808 -1.3110 3.8366 36 1 5.3013 -3.4164 4.3350 37 1 6.9362 -5.0695 3.5443 38 1 7.3541 -5.3264 1.1273 39 1 6.1409 -3.9166 -0.4793 40 1 4.6348 -3.4548 -1.5858 41 1 3.0875 -3.6111 -0.7200 42 1 3.1946 -1.1092 -2.0810 43 1 3.4122 -0.3354 -4.3000 44 1 3.6120 -1.6931 -5.4354 45 1 2.9661 0.3385 -6.6703 46 1 1.5308 0.5336 -5.6331 47 1 2.1118 -1.8232 -7.4872 48 1 0.8901 -0.5541 -7.7496 49 1 -0.1122 -2.6310 -6.7904 50 1 -0.2908 -1.2384 -5.6960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948910144.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:17 Heat of formation + Delta-G solvation = -33.385720 kcal Electronic energy + Delta-G solvation = -31638.223461 eV Core-core repulsion = 27630.666357 eV Total energy + Delta-G solvation = -4007.557104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.00118 -39.53322 -38.02153 -36.41798 -34.26684 -33.52273 -32.53933 -32.25327 -31.11071 -30.47504 -28.93170 -26.88534 -25.54751 -24.28661 -23.71958 -22.89938 -22.02105 -21.02536 -20.38176 -19.82825 -19.24748 -17.28418 -16.48778 -16.34689 -15.99584 -15.76036 -15.38114 -15.08632 -14.83680 -14.61345 -14.49887 -14.25611 -14.16914 -13.96177 -13.41844 -13.21832 -13.14478 -12.83107 -12.60311 -12.54026 -12.42274 -12.21339 -11.97863 -11.94692 -11.43719 -11.31164 -11.19440 -11.14992 -11.03702 -10.96986 -10.79249 -10.56023 -10.37700 -10.16111 -9.95168 -9.72473 -9.36303 -9.04369 -8.64096 -8.46239 -8.23642 -8.16569 -6.86914 -6.18595 -3.57117 1.68081 1.71597 3.19894 3.23020 3.36883 3.40332 3.42166 4.07369 4.36075 4.40859 4.72060 4.81925 4.83479 4.87898 5.03591 5.07683 5.13863 5.23247 5.27325 5.28410 5.33133 5.44175 5.55079 5.57056 5.65713 5.68883 5.77615 5.82601 5.85106 5.89965 5.93042 5.99153 5.99608 6.03911 6.05921 6.12771 6.22240 6.28200 6.35440 6.42339 6.61345 6.65909 6.77019 6.82125 6.83839 7.07473 7.14882 7.33588 7.34729 7.86663 8.23974 8.30782 8.81014 8.90775 9.53830 10.03524 10.94886 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011465 B = 0.004118 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.570779 B = 6797.294009 C = 8446.960472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.051 3.949 3 Si 0.838 3.162 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.258 1.258 7 C -0.274 4.274 8 H 0.084 0.916 9 N -0.596 5.596 10 C 0.144 3.856 11 C -0.103 4.103 12 C -0.050 4.050 13 C -0.129 4.129 14 C -0.128 4.128 15 C -0.132 4.132 16 C -0.118 4.118 17 C -0.077 4.077 18 C 0.193 3.807 19 H 0.047 0.953 20 C 0.142 3.858 21 N -0.690 5.690 22 C 0.522 3.478 23 O -0.542 6.542 24 C 0.075 3.925 25 H 0.089 0.911 26 C -0.144 4.144 27 C -0.122 4.122 28 C -0.156 4.156 29 C 0.058 3.942 30 O -0.354 6.354 31 H 0.265 0.735 32 H 0.071 0.929 33 H 0.032 0.968 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.408 0.592 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.094 0.906 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.992 -0.410 -4.545 10.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.152 4.152 3 Si 0.665 3.335 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.183 1.183 7 C -0.402 4.402 8 H 0.101 0.899 9 N -0.320 5.320 10 C 0.019 3.981 11 C -0.141 4.141 12 C -0.050 4.050 13 C -0.147 4.147 14 C -0.146 4.146 15 C -0.150 4.150 16 C -0.137 4.137 17 C -0.079 4.079 18 C 0.087 3.913 19 H 0.064 0.936 20 C 0.018 3.982 21 N -0.343 5.343 22 C 0.307 3.693 23 O -0.420 6.420 24 C 0.014 3.986 25 H 0.107 0.893 26 C -0.182 4.182 27 C -0.159 4.159 28 C -0.194 4.194 29 C -0.019 4.019 30 O -0.272 6.272 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.245 0.755 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.113 0.887 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.742 -1.383 -4.602 9.976 hybrid contribution 0.358 1.805 0.128 1.844 sum 9.100 0.421 -4.475 10.149 Atomic orbital electron populations 1.70025 1.06244 1.27008 1.48097 1.25583 0.94755 0.97412 0.97475 0.87430 0.81834 0.85858 0.78419 1.21341 1.22117 1.18270 1.18705 0.91637 0.95444 1.34399 0.89909 1.44266 1.08700 1.61942 1.17079 1.21311 0.99148 0.92683 0.84971 1.21037 0.97273 0.97194 0.98627 1.19598 0.96184 0.96773 0.92475 1.21179 0.97550 0.96876 0.99137 1.20947 0.99005 0.98962 0.95672 1.20952 1.00529 1.00068 0.93419 1.21154 0.96682 0.96234 0.99597 1.20084 0.96622 0.96808 0.94388 1.19643 0.90047 0.91719 0.89940 0.93579 1.21255 0.96353 0.93171 0.87392 1.45771 1.53885 1.11096 1.23508 1.19868 0.78991 0.88337 0.82145 1.90653 1.60238 1.14431 1.76674 1.21891 0.94419 0.92122 0.90167 0.89302 1.22123 0.98277 0.99291 0.98539 1.21590 0.99682 0.97772 0.96875 1.22207 0.99433 0.99103 0.98658 1.22621 0.93512 0.96220 0.89525 1.88039 1.66160 1.32123 1.40884 0.92552 0.91059 0.95043 0.90381 0.92037 0.86721 0.86804 0.86639 0.86219 0.92380 0.90930 0.75505 0.90242 0.90696 0.91300 0.91384 0.91079 0.90994 0.88747 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.22 13.97 55.49 0.78 -23.44 16 2 C 0.05 1.29 4.94 -17.43 -0.09 1.21 16 3 Si 0.84 18.90 27.00 -169.99 -4.59 14.31 16 4 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -5.58 5.31 56.52 0.30 -5.28 16 7 C -0.27 -6.69 6.98 -15.06 -0.11 -6.79 16 8 H 0.08 2.30 6.48 -52.49 -0.34 1.96 16 9 N -0.60 -12.59 2.40 -166.34 -0.40 -12.99 16 10 C 0.14 2.84 4.46 -3.76 -0.02 2.83 16 11 C -0.10 -1.76 5.87 -28.05 -0.16 -1.92 16 12 C -0.05 -0.84 5.76 -104.61 -0.60 -1.45 16 13 C -0.13 -1.88 9.59 -39.43 -0.38 -2.26 16 14 C -0.13 -1.70 10.04 -39.69 -0.40 -2.10 16 15 C -0.13 -1.77 10.05 -39.67 -0.40 -2.17 16 16 C -0.12 -1.77 9.06 -39.46 -0.36 -2.13 16 17 C -0.08 -1.32 5.44 -104.55 -0.57 -1.89 16 18 C 0.19 3.55 3.04 -68.93 -0.21 3.34 16 19 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 20 C 0.14 2.66 4.15 -4.04 -0.02 2.64 16 21 N -0.69 -13.08 3.58 -60.30 -0.22 -13.29 16 22 C 0.52 10.52 7.18 -10.99 -0.08 10.44 16 23 O -0.54 -12.82 16.50 -14.30 -0.24 -13.05 16 24 C 0.08 1.30 3.05 -27.84 -0.09 1.22 16 25 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 26 C -0.14 -1.97 5.37 -26.59 -0.14 -2.11 16 27 C -0.12 -1.39 6.03 -26.55 -0.16 -1.55 16 28 C -0.16 -1.70 6.14 -26.59 -0.16 -1.86 16 29 C 0.06 0.76 6.84 37.21 0.25 1.02 16 30 O -0.35 -6.33 9.94 -55.09 -0.55 -6.87 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.07 1.51 6.40 -51.93 -0.33 1.18 16 33 H 0.03 0.61 7.25 -51.93 -0.38 0.23 16 34 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 36 H 0.11 1.44 8.05 -52.48 -0.42 1.01 16 37 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.61 6.66 -52.49 -0.35 1.26 16 40 H 0.06 0.98 6.59 -51.93 -0.34 0.64 16 41 H 0.07 1.58 7.75 -51.93 -0.40 1.18 16 42 H 0.41 7.61 7.25 -40.82 -0.30 7.32 16 43 H 0.08 1.02 7.99 -51.93 -0.41 0.61 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 385.28 15.07 5.81 5.81 Total: -1.00 -30.44 385.28 -11.09 -41.53 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -8.01 Total: 11.53 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -3.68 Total: -3.53 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.16 Total: -49.73 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.78 Total: -19.93 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.59 Total: 14.31 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.44 -11.09 -41.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948910144.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.143 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds