Wall clock time and date at job start Wed Apr 1 2020 02:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00264 * 2 1 4 4 H 1.48501 * 109.47402 * 268.48185 * 3 2 1 5 5 H 1.48503 * 109.46535 * 28.47671 * 3 2 1 6 6 H 1.48492 * 109.47129 * 148.47460 * 3 2 1 7 7 C 1.38818 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99710 * 30.96358 * 7 2 1 9 9 N 1.36936 * 119.99962 * 210.96079 * 7 2 1 10 10 C 1.47223 * 121.31458 * 42.14551 * 9 7 2 11 11 C 1.52781 * 107.93282 * 115.93104 * 10 9 7 12 12 C 1.50592 * 110.85339 * 47.53509 * 11 10 9 13 13 C 1.38976 * 117.63091 * 160.02280 * 12 11 10 14 14 C 1.37913 * 120.57758 * 178.80837 * 13 12 11 15 15 C 1.38264 * 119.82668 * 359.97438 * 14 13 12 16 16 C 1.37960 * 119.72082 * 0.28140 * 15 14 13 17 17 C 1.37662 * 122.84738 * 339.34967 * 12 11 10 18 18 C 1.46674 * 121.31689 * 222.16556 * 9 7 2 19 19 H 1.08999 * 109.43743 * 104.38405 * 18 9 7 20 20 C 1.52995 * 109.43724 * 344.50951 * 18 9 7 21 21 N 1.46501 * 109.47234 * 60.65669 * 20 18 9 22 22 C 1.34775 * 120.00142 * 185.80317 * 21 20 18 23 23 O 1.21279 * 120.00020 * 359.97438 * 22 21 20 24 24 C 1.50699 * 120.00091 * 180.02562 * 22 21 20 25 25 H 1.09004 * 109.48238 * 305.02470 * 24 22 21 26 26 C 1.53091 * 109.48129 * 65.05546 * 24 22 21 27 27 C 1.53176 * 109.16612 * 177.59422 * 26 24 22 28 28 C 1.53176 * 109.03469 * 303.01768 * 27 26 24 29 29 C 1.53094 * 109.16157 * 56.98158 * 28 27 26 30 30 O 1.42898 * 109.48202 * 185.00146 * 24 22 21 31 31 H 0.96995 * 120.00286 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.76724 * 356.32009 * 10 9 7 33 33 H 1.09000 * 109.76710 * 235.53842 * 10 9 7 34 34 H 1.08999 * 109.20307 * 287.17766 * 11 10 9 35 35 H 1.09000 * 109.16378 * 167.86545 * 11 10 9 36 36 H 1.08003 * 119.71418 * 358.78589 * 13 12 11 37 37 H 1.07999 * 120.08513 * 180.02562 * 14 13 12 38 38 H 1.07996 * 120.13605 * 180.25779 * 15 14 13 39 39 H 1.07993 * 119.74914 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.47487 * 180.65860 * 20 18 9 41 41 H 1.09001 * 109.47034 * 300.65776 * 20 18 9 42 42 H 0.97003 * 119.99554 * 5.80623 * 21 20 18 43 43 H 1.09007 * 109.52297 * 297.50333 * 26 24 22 44 44 H 1.08999 * 109.52326 * 57.68740 * 26 24 22 45 45 H 1.09005 * 109.54547 * 183.15424 * 27 26 24 46 46 H 1.08998 * 109.54224 * 62.88932 * 27 26 24 47 47 H 1.08999 * 109.52975 * 297.07792 * 28 27 26 48 48 H 1.08999 * 109.52628 * 176.88323 * 28 27 26 49 49 H 1.09004 * 109.48210 * 182.40694 * 29 28 27 50 50 H 1.08999 * 109.48978 * 62.37574 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5299 2.0279 -1.3996 5 1 1.4319 2.6617 0.6676 6 1 3.5312 1.4496 0.7320 7 6 2.0103 -1.2022 -0.0005 8 1 1.5857 -2.0706 -0.4821 9 7 3.2333 -1.2869 0.6095 10 6 3.4831 -0.6525 1.9143 11 6 3.7842 -1.7580 2.9250 12 6 4.7917 -2.7307 2.3713 13 6 5.4841 -3.5264 3.2762 14 6 6.4029 -4.4550 2.8341 15 6 6.6387 -4.5979 1.4792 16 6 5.9568 -3.8056 0.5790 17 6 5.0363 -2.8661 1.0234 18 6 4.3463 -2.0130 -0.0113 19 1 5.0581 -1.2996 -0.4265 20 6 3.8096 -2.9061 -1.1317 21 7 3.1573 -2.0762 -2.1476 22 6 2.5054 -2.6563 -3.1747 23 8 2.4593 -3.8654 -3.2583 24 6 1.8349 -1.8027 -4.2201 25 1 1.1414 -1.1143 -3.7371 26 6 2.8948 -1.0064 -4.9858 27 6 2.2116 -0.1876 -6.0853 28 6 1.4244 -1.1339 -6.9969 29 6 0.4213 -1.9252 -6.1536 30 8 1.1191 -2.6392 -5.1311 31 1 -0.4850 0.8400 0.0004 32 1 2.6002 -0.0959 2.2287 33 1 4.3369 0.0209 1.8393 34 1 2.8624 -2.2907 3.1588 35 1 4.1808 -1.3110 3.8366 36 1 5.3013 -3.4164 4.3350 37 1 6.9362 -5.0695 3.5443 38 1 7.3541 -5.3264 1.1273 39 1 6.1409 -3.9166 -0.4793 40 1 4.6348 -3.4548 -1.5858 41 1 3.0875 -3.6111 -0.7200 42 1 3.1946 -1.1092 -2.0810 43 1 3.4122 -0.3354 -4.3000 44 1 3.6120 -1.6931 -5.4354 45 1 2.9661 0.3385 -6.6703 46 1 1.5308 0.5336 -5.6331 47 1 2.1118 -1.8232 -7.4872 48 1 0.8901 -0.5541 -7.7496 49 1 -0.1122 -2.6310 -6.7904 50 1 -0.2908 -1.2384 -5.6960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948910144.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:15 Heat of formation + Delta-G solvation = -50.346215 kcal Electronic energy + Delta-G solvation = -31638.958923 eV Core-core repulsion = 27630.666357 eV Total energy + Delta-G solvation = -4008.292566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.42409 -40.80694 -39.40799 -37.91531 -35.80649 -34.65004 -34.33250 -33.62948 -32.30412 -31.99284 -30.22366 -28.34984 -26.98385 -25.72334 -24.84092 -24.28023 -23.47200 -22.33532 -21.65753 -21.18017 -20.71223 -18.82908 -18.08875 -17.75572 -17.30387 -17.25120 -16.65942 -16.47406 -16.38622 -16.07146 -15.77169 -15.51947 -15.35472 -15.23725 -14.83671 -14.71051 -14.56153 -14.25190 -13.99768 -13.84625 -13.66898 -13.61897 -13.49742 -13.39494 -12.81215 -12.60550 -12.59583 -12.49404 -12.38165 -12.20864 -12.10454 -11.96913 -11.66734 -11.53568 -11.41320 -11.38994 -10.72846 -10.55664 -10.45799 -9.90215 -9.60572 -9.37427 -8.64264 -8.18017 -5.53930 0.53757 0.56418 1.40218 1.49591 1.58004 1.61975 2.00623 2.50041 2.91814 2.93837 3.10014 3.33244 3.64119 3.75110 3.88255 3.91155 3.96572 4.01542 4.05325 4.10033 4.17385 4.20655 4.30023 4.37376 4.45513 4.48114 4.52445 4.59594 4.61723 4.74160 4.78642 4.82060 4.85707 4.87649 5.00044 5.00941 5.04188 5.09665 5.12441 5.18337 5.21621 5.33438 5.37974 5.53316 5.65269 5.68917 5.86184 5.96240 6.11856 6.21871 6.32993 6.65738 6.95501 7.30203 7.61745 8.15561 9.00062 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011465 B = 0.004118 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.570779 B = 6797.294009 C = 8446.960472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.309 1.309 6 H -0.240 1.240 7 C -0.250 4.250 8 H 0.038 0.962 9 N -0.606 5.606 10 C 0.141 3.859 11 C -0.094 4.094 12 C -0.075 4.075 13 C -0.132 4.132 14 C -0.123 4.123 15 C -0.128 4.128 16 C -0.126 4.126 17 C -0.101 4.101 18 C 0.198 3.802 19 H 0.061 0.939 20 C 0.149 3.851 21 N -0.683 5.683 22 C 0.514 3.486 23 O -0.585 6.585 24 C 0.079 3.921 25 H 0.074 0.926 26 C -0.138 4.138 27 C -0.120 4.120 28 C -0.149 4.149 29 C 0.046 3.954 30 O -0.387 6.387 31 H 0.262 0.738 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.135 0.865 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.410 0.590 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.100 0.900 49 H 0.111 0.889 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.228 0.172 -4.709 13.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.236 1.236 6 H -0.164 1.164 7 C -0.379 4.379 8 H 0.056 0.944 9 N -0.331 5.331 10 C 0.016 3.984 11 C -0.133 4.133 12 C -0.075 4.075 13 C -0.150 4.150 14 C -0.141 4.141 15 C -0.146 4.146 16 C -0.144 4.144 17 C -0.103 4.103 18 C 0.092 3.908 19 H 0.078 0.922 20 C 0.025 3.975 21 N -0.334 5.334 22 C 0.301 3.699 23 O -0.466 6.466 24 C 0.018 3.982 25 H 0.092 0.908 26 C -0.176 4.176 27 C -0.158 4.158 28 C -0.187 4.187 29 C -0.030 4.030 30 O -0.306 6.306 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.153 0.847 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.148 0.852 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.247 0.753 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.113 0.887 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.119 0.881 49 H 0.129 0.871 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.031 -0.782 -4.759 12.961 hybrid contribution -0.652 1.449 0.247 1.608 sum 11.378 0.667 -4.512 12.258 Atomic orbital electron populations 1.70143 1.08085 1.27519 1.51286 1.26014 0.94993 1.00380 0.97892 0.86424 0.80835 0.81145 0.78799 1.20308 1.23622 1.16370 1.18312 0.92584 0.93803 1.33191 0.94449 1.44311 1.08482 1.62377 1.17944 1.21338 0.98591 0.93615 0.84861 1.20891 0.96973 0.96426 0.99008 1.19679 0.97074 0.97882 0.92904 1.21417 0.97216 0.96489 0.99832 1.21368 0.98105 0.98276 0.96319 1.21347 1.00171 0.99671 0.93392 1.21318 0.96448 0.95974 1.00673 1.20035 0.97970 0.98067 0.94226 1.19685 0.89189 0.91744 0.90166 0.92196 1.21213 0.95764 0.92808 0.87712 1.45750 1.53408 1.11121 1.23129 1.20512 0.78537 0.88201 0.82697 1.90610 1.61925 1.16257 1.77784 1.21825 0.95024 0.91324 0.90026 0.90792 1.22114 0.97206 0.99167 0.99099 1.21638 1.00266 0.97532 0.96337 1.22175 0.98944 0.98965 0.98580 1.22949 0.94096 0.96893 0.89018 1.87989 1.66853 1.33809 1.41993 0.92860 0.93094 0.93812 0.92444 0.89145 0.84691 0.83515 0.83636 0.85181 0.90250 0.94888 0.75275 0.89481 0.90556 0.88660 0.91478 0.90896 0.88130 0.87129 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.90 13.97 21.65 0.30 -53.60 16 2 C 0.01 0.33 4.94 84.86 0.42 0.75 16 3 Si 0.90 39.70 27.00 68.60 1.85 41.56 16 4 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.31 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.24 -9.74 5.31 99.48 0.53 -9.21 16 7 C -0.25 -12.73 6.98 84.04 0.59 -12.15 16 8 H 0.04 2.25 6.48 -2.91 -0.02 2.23 16 9 N -0.61 -26.02 2.40 -680.17 -1.63 -27.65 16 10 C 0.14 5.50 4.46 86.17 0.38 5.88 16 11 C -0.09 -3.17 5.87 29.74 0.17 -3.00 16 12 C -0.08 -2.43 5.76 -19.86 -0.11 -2.54 16 13 C -0.13 -3.45 9.59 22.37 0.21 -3.24 16 14 C -0.12 -2.78 10.04 22.20 0.22 -2.56 16 15 C -0.13 -2.99 10.05 22.21 0.22 -2.76 16 16 C -0.13 -3.51 9.06 22.35 0.20 -3.31 16 17 C -0.10 -3.37 5.44 -19.82 -0.11 -3.48 16 18 C 0.20 7.26 3.04 44.25 0.13 7.40 16 19 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 20 C 0.15 5.76 4.15 86.38 0.36 6.12 16 21 N -0.68 -26.93 3.58 -463.07 -1.66 -28.58 16 22 C 0.51 21.79 7.18 87.66 0.63 22.42 16 23 O -0.58 -29.18 16.50 15.96 0.26 -28.91 16 24 C 0.08 2.84 3.05 29.88 0.09 2.93 16 25 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 26 C -0.14 -3.66 5.37 30.68 0.16 -3.49 16 27 C -0.12 -2.49 6.03 30.71 0.19 -2.30 16 28 C -0.15 -2.93 6.14 30.68 0.19 -2.74 16 29 C 0.05 1.20 6.84 72.01 0.49 1.69 16 30 O -0.39 -14.29 9.94 -130.00 -1.29 -15.58 16 31 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.05 2.17 6.40 -2.39 -0.02 2.16 16 33 H 0.04 1.61 7.25 -2.39 -0.02 1.59 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.09 2.46 8.10 -2.39 -0.02 2.44 16 36 H 0.14 2.92 8.05 -2.91 -0.02 2.89 16 37 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 39 H 0.13 3.25 6.66 -2.91 -0.02 3.23 16 40 H 0.08 2.70 6.59 -2.39 -0.02 2.69 16 41 H 0.03 1.53 7.75 -2.39 -0.02 1.51 16 42 H 0.41 15.69 7.25 -92.71 -0.67 15.01 16 43 H 0.09 2.14 7.99 -2.38 -0.02 2.12 16 44 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 45 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 50 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -70.44 385.28 2.38 -68.07 By element: Atomic # 1 Polarization: 38.98 SS G_CDS: 0.09 Total: 39.07 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 4.45 Total: 5.64 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -2.99 Total: -109.83 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -1.03 Total: -44.50 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 1.85 Total: 41.56 kcal Total: -70.44 2.38 -68.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948910144.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.719 kcal (2) G-P(sol) polarization free energy of solvation -70.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds