Wall clock time and date at job start Wed Apr 1 2020 02:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48495 * 109.47189 * 274.42868 * 3 2 1 5 5 H 1.48504 * 109.47092 * 34.42997 * 3 2 1 6 6 H 1.48504 * 109.47237 * 154.43014 * 3 2 1 7 7 C 1.38810 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00025 * 160.94422 * 7 2 1 9 9 N 1.36934 * 120.00588 * 340.95074 * 7 2 1 10 10 C 1.47237 * 121.33509 * 333.89244 * 9 7 2 11 11 C 1.52793 * 107.89911 * 115.70961 * 10 9 7 12 12 C 1.50604 * 110.84835 * 47.47999 * 11 10 9 13 13 C 1.38977 * 117.61353 * 160.55168 * 12 11 10 14 14 C 1.37913 * 120.58638 * 179.51650 * 13 12 11 15 15 C 1.38266 * 119.82220 * 359.59913 * 14 13 12 16 16 C 1.37961 * 119.71567 * 0.46639 * 15 14 13 17 17 C 1.37668 * 122.86784 * 339.97199 * 12 11 10 18 18 C 1.46683 * 121.34444 * 153.86749 * 9 7 2 19 19 H 1.09001 * 109.43501 * 344.43725 * 18 9 7 20 20 C 1.53003 * 109.40048 * 104.32919 * 18 9 7 21 21 N 1.46500 * 109.47305 * 305.19309 * 20 18 9 22 22 C 1.34774 * 119.99667 * 179.97438 * 21 20 18 23 23 O 1.21276 * 120.00286 * 359.97438 * 22 21 20 24 24 C 1.50707 * 119.99562 * 180.02562 * 22 21 20 25 25 H 1.08997 * 109.48196 * 54.97261 * 24 22 21 26 26 C 1.53092 * 109.47645 * 294.94061 * 24 22 21 27 27 C 1.53184 * 109.16128 * 182.40760 * 26 24 22 28 28 C 1.53178 * 109.03107 * 56.98188 * 27 26 24 29 29 C 1.53090 * 109.16770 * 303.01770 * 28 27 26 30 30 O 1.42901 * 109.47731 * 174.99906 * 24 22 21 31 31 H 0.97007 * 120.00195 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.77631 * 235.31054 * 10 9 7 33 33 H 1.09000 * 109.77648 * 356.05863 * 10 9 7 34 34 H 1.08998 * 109.20163 * 167.82979 * 11 10 9 35 35 H 1.09000 * 109.20390 * 287.17337 * 11 10 9 36 36 H 1.08006 * 119.70816 * 359.29922 * 13 12 11 37 37 H 1.07998 * 120.08839 * 179.88593 * 14 13 12 38 38 H 1.07994 * 120.14092 * 180.47962 * 15 14 13 39 39 H 1.07995 * 119.74514 * 179.82102 * 16 15 14 40 40 H 1.08994 * 109.46903 * 65.19424 * 20 18 9 41 41 H 1.09002 * 109.46958 * 185.19149 * 20 18 9 42 42 H 0.96998 * 119.99902 * 0.02562 * 21 20 18 43 43 H 1.08995 * 109.52545 * 302.31080 * 26 24 22 44 44 H 1.08995 * 109.52532 * 62.51032 * 26 24 22 45 45 H 1.08995 * 109.54759 * 297.11969 * 27 26 24 46 46 H 1.08990 * 109.61546 * 176.89011 * 27 26 24 47 47 H 1.09007 * 109.52004 * 183.11084 * 28 27 26 48 48 H 1.09001 * 109.57801 * 62.95535 * 28 27 26 49 49 H 1.09002 * 109.47913 * 297.63264 * 29 28 27 50 50 H 1.08997 * 109.48340 * 177.59407 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4040 2.1005 -1.3958 5 1 1.4975 2.6239 0.7916 6 1 3.5914 1.4150 0.6043 7 6 2.0101 -1.2021 0.0005 8 1 3.0458 -1.2279 -0.3048 9 7 1.3818 -2.3554 0.3881 10 6 0.2356 -2.3297 1.3119 11 6 -0.9880 -2.8465 0.5567 12 6 -0.6631 -4.1163 -0.1850 13 6 -1.7244 -4.9267 -0.5703 14 6 -1.4977 -6.0985 -1.2613 15 6 -0.2046 -6.4686 -1.5818 16 6 0.8509 -5.6669 -1.1993 17 6 0.6242 -4.4897 -0.4991 18 6 1.8231 -3.6661 -0.1008 19 1 2.4734 -3.5307 -0.9650 20 6 2.5923 -4.3890 1.0068 21 7 3.6873 -3.5370 1.4771 22 6 4.5045 -3.9699 2.4575 23 8 4.3331 -5.0646 2.9507 24 6 5.6306 -3.0932 2.9417 25 1 5.2323 -2.1261 3.2485 26 6 6.6439 -2.8931 1.8117 27 6 7.8145 -2.0514 2.3292 28 6 8.4309 -2.7480 3.5462 29 6 7.3487 -2.9537 4.6093 30 8 6.2760 -3.7172 4.0536 31 1 -0.4851 0.8401 0.0004 32 1 0.4383 -2.9718 2.1690 33 1 0.0573 -1.3089 1.6500 34 1 -1.7915 -3.0416 1.2668 35 1 -1.3154 -2.0896 -0.1560 36 1 -2.7355 -4.6379 -0.3235 37 1 -2.3283 -6.7231 -1.5552 38 1 -0.0218 -7.3813 -2.1295 39 1 1.8613 -5.9569 -1.4469 40 1 1.9183 -4.6051 1.8356 41 1 2.9995 -5.3220 0.6169 42 1 3.8237 -2.6611 1.0834 43 1 7.0124 -3.8627 1.4770 44 1 6.1645 -2.3775 0.9796 45 1 7.4541 -1.0641 2.6179 46 1 8.5667 -1.9507 1.5469 47 1 9.2296 -2.1286 3.9546 48 1 8.8363 -3.7146 3.2473 49 1 6.9729 -1.9847 4.9378 50 1 7.7718 -3.4873 5.4603 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948910145.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:20 Heat of formation + Delta-G solvation = -43.294537 kcal Electronic energy + Delta-G solvation = -31295.647999 eV Core-core repulsion = 27287.661216 eV Total energy + Delta-G solvation = -4007.986783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.08212 -39.40794 -38.15051 -36.26736 -34.23526 -33.62833 -32.38350 -32.17944 -31.22127 -29.90815 -28.64786 -27.15038 -25.54261 -24.11856 -23.75960 -22.61622 -22.04404 -21.25396 -20.55261 -19.95837 -18.69480 -17.39779 -16.65588 -16.49579 -15.88076 -15.63104 -15.43929 -15.03460 -14.83181 -14.55735 -14.45473 -14.32888 -14.17779 -13.83514 -13.51631 -13.35409 -12.85106 -12.73769 -12.59251 -12.56367 -12.32923 -12.14418 -11.72587 -11.53691 -11.32722 -11.26654 -11.16960 -11.14441 -11.08967 -10.86744 -10.72219 -10.54468 -10.47802 -10.13843 -9.89310 -9.59461 -9.56260 -9.25922 -8.64575 -8.50964 -8.25508 -7.92209 -6.88262 -5.97137 -3.40133 1.86879 1.94200 2.98580 3.17947 3.25450 3.32435 3.34588 4.17102 4.29516 4.32077 4.66781 4.69084 4.73383 4.86141 5.07854 5.15941 5.19761 5.23026 5.34676 5.37447 5.41470 5.45144 5.46731 5.57283 5.60107 5.66940 5.77843 5.80989 5.86706 5.89319 5.92485 5.97286 6.08093 6.13826 6.23243 6.36807 6.43901 6.54071 6.58544 6.70582 6.75917 6.91803 6.96289 7.01696 7.12930 7.32364 7.35558 7.50723 7.59575 7.64901 8.04426 8.23122 8.66927 8.99859 9.62497 10.21745 11.10055 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009286 B = 0.004097 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.717363 B = 6832.959611 C = 9079.294053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.011 3.989 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.068 0.932 9 N -0.579 5.579 10 C 0.164 3.836 11 C -0.096 4.096 12 C -0.040 4.040 13 C -0.134 4.134 14 C -0.128 4.128 15 C -0.139 4.139 16 C -0.119 4.119 17 C -0.080 4.080 18 C 0.194 3.806 19 H 0.077 0.923 20 C 0.116 3.884 21 N -0.703 5.703 22 C 0.516 3.484 23 O -0.537 6.537 24 C 0.075 3.925 25 H 0.084 0.916 26 C -0.145 4.145 27 C -0.121 4.121 28 C -0.157 4.157 29 C 0.059 3.941 30 O -0.355 6.355 31 H 0.255 0.745 32 H 0.007 0.993 33 H 0.095 0.905 34 H 0.048 0.952 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.410 0.590 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.051 0.949 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.332 -4.915 2.118 9.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.189 4.189 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.086 0.914 9 N -0.300 5.300 10 C 0.039 3.961 11 C -0.135 4.135 12 C -0.040 4.040 13 C -0.152 4.152 14 C -0.146 4.146 15 C -0.157 4.157 16 C -0.137 4.137 17 C -0.082 4.082 18 C 0.085 3.915 19 H 0.095 0.905 20 C -0.010 4.010 21 N -0.356 5.356 22 C 0.300 3.700 23 O -0.414 6.414 24 C 0.013 3.987 25 H 0.102 0.898 26 C -0.183 4.183 27 C -0.159 4.159 28 C -0.195 4.195 29 C -0.018 4.018 30 O -0.273 6.273 31 H 0.066 0.934 32 H 0.025 0.975 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.248 0.752 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.090 0.910 49 H 0.069 0.931 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.037 -5.683 2.541 10.166 hybrid contribution 0.353 1.524 -0.506 1.645 sum 8.390 -4.159 2.035 9.583 Atomic orbital electron populations 1.69973 1.05270 1.25660 1.52272 1.24980 0.95226 0.98362 1.00337 0.86330 0.79241 0.83773 0.77642 1.21478 1.21531 1.20372 1.19008 0.93112 0.84636 1.42156 0.91447 1.44140 1.36011 0.99856 1.50006 1.20808 0.85127 1.00846 0.89328 1.20992 0.99453 0.93617 0.99392 1.19870 0.91923 0.95941 0.96257 1.21197 0.98575 0.95275 1.00179 1.20917 0.96582 0.97161 0.99950 1.20881 0.93021 0.99862 1.01962 1.21096 0.98662 0.94698 0.99258 1.20071 0.95258 0.94869 0.97953 1.19610 0.91545 0.86412 0.93959 0.90511 1.21896 0.88013 0.92665 0.98426 1.45811 1.30319 1.21700 1.37752 1.20028 0.82769 0.87122 0.80077 1.90674 1.72403 1.21579 1.56717 1.21902 0.92358 0.96052 0.88341 0.89796 1.22132 0.96548 1.01741 0.97917 1.21587 0.97583 0.98871 0.97854 1.22215 0.98717 1.01711 0.96878 1.22635 0.87263 0.96336 0.95598 1.88052 1.47842 1.45250 1.46143 0.93447 0.97472 0.88666 0.93332 0.88125 0.86903 0.87059 0.86955 0.86761 0.92100 0.92403 0.75245 0.90553 0.89858 0.91385 0.91073 0.90888 0.90977 0.93052 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.87 10.15 55.49 0.56 -22.31 16 2 C 0.01 0.27 4.93 -17.43 -0.09 0.19 16 3 Si 0.90 19.53 29.59 -169.99 -5.03 14.50 16 4 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.26 -6.11 8.71 -15.06 -0.13 -6.24 16 8 H 0.07 1.50 7.32 -52.48 -0.38 1.12 16 9 N -0.58 -12.67 2.30 -166.31 -0.38 -13.05 16 10 C 0.16 3.61 5.46 -3.75 -0.02 3.59 16 11 C -0.10 -1.98 5.77 -28.04 -0.16 -2.14 16 12 C -0.04 -0.77 5.76 -104.60 -0.60 -1.37 16 13 C -0.13 -2.28 9.59 -39.43 -0.38 -2.66 16 14 C -0.13 -1.95 10.05 -39.69 -0.40 -2.34 16 15 C -0.14 -2.09 10.05 -39.67 -0.40 -2.49 16 16 C -0.12 -1.95 9.34 -39.46 -0.37 -2.32 16 17 C -0.08 -1.50 5.17 -104.56 -0.54 -2.04 16 18 C 0.19 3.71 2.51 -68.93 -0.17 3.54 16 19 H 0.08 1.47 7.98 -51.93 -0.41 1.06 16 20 C 0.12 2.11 5.00 -4.04 -0.02 2.09 16 21 N -0.70 -12.19 5.35 -60.29 -0.32 -12.51 16 22 C 0.52 9.26 7.18 -10.98 -0.08 9.18 16 23 O -0.54 -11.66 16.51 -14.30 -0.24 -11.90 16 24 C 0.07 1.10 3.05 -27.83 -0.09 1.01 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 26 C -0.15 -1.73 5.37 -26.59 -0.14 -1.87 16 27 C -0.12 -1.18 6.03 -26.54 -0.16 -1.34 16 28 C -0.16 -1.45 6.14 -26.59 -0.16 -1.61 16 29 C 0.06 0.64 6.84 37.20 0.25 0.89 16 30 O -0.35 -5.48 9.94 -55.09 -0.55 -6.03 16 31 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 32 H 0.01 0.16 7.48 -51.93 -0.39 -0.23 16 33 H 0.10 2.32 5.91 -51.93 -0.31 2.02 16 34 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 35 H 0.10 2.35 7.15 -51.93 -0.37 1.98 16 36 H 0.11 1.72 8.05 -52.48 -0.42 1.29 16 37 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.11 1.65 8.05 -52.49 -0.42 1.22 16 40 H 0.06 1.23 7.54 -51.93 -0.39 0.83 16 41 H 0.06 1.00 8.03 -51.93 -0.42 0.59 16 42 H 0.41 6.96 6.54 -40.82 -0.27 6.69 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.08 0.94 7.99 -51.93 -0.42 0.53 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 391.84 15.07 5.90 5.90 Total: -1.00 -28.89 391.84 -11.69 -40.58 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -7.99 Total: 10.73 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -3.65 Total: -5.93 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.14 Total: -47.87 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.78 Total: -17.92 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.89 -11.69 -40.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948910145.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.712 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds