Wall clock time and date at job start Wed Apr 1 2020 02:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99870 * 2 1 4 4 H 1.48496 * 109.46990 * 274.98568 * 3 2 1 5 5 H 1.48495 * 109.47009 * 34.98455 * 3 2 1 6 6 H 1.48501 * 109.46951 * 154.98402 * 3 2 1 7 7 C 1.38818 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99775 * 167.23943 * 7 2 1 9 9 N 1.36931 * 119.99886 * 347.24682 * 7 2 1 10 10 C 1.47248 * 121.34607 * 328.89575 * 9 7 2 11 11 C 1.52789 * 107.87819 * 115.67402 * 10 9 7 12 12 C 1.50608 * 110.84963 * 47.48285 * 11 10 9 13 13 C 1.38977 * 117.60971 * 160.41264 * 12 11 10 14 14 C 1.37909 * 120.58288 * 179.38078 * 13 12 11 15 15 C 1.38265 * 119.82127 * 0.02562 * 14 13 12 16 16 C 1.37949 * 119.72171 * 0.20056 * 15 14 13 17 17 C 1.37671 * 122.86553 * 340.16797 * 12 11 10 18 18 C 1.46692 * 121.34149 * 148.90083 * 9 7 2 19 19 H 1.08999 * 109.40001 * 104.24075 * 18 9 7 20 20 C 1.52990 * 109.43596 * 344.34439 * 18 9 7 21 21 N 1.46499 * 109.47650 * 303.45037 * 20 18 9 22 22 C 1.34774 * 120.00668 * 183.54508 * 21 20 18 23 23 O 1.21283 * 119.99731 * 5.19737 * 22 21 20 24 24 C 1.50694 * 120.00263 * 184.92270 * 22 21 20 25 25 H 1.08996 * 109.48504 * 57.46264 * 24 22 21 26 26 C 1.53092 * 109.48144 * 297.43642 * 24 22 21 27 27 C 1.53180 * 109.16752 * 182.40950 * 26 24 22 28 28 C 1.53172 * 109.03486 * 56.97924 * 27 26 24 29 29 C 1.53099 * 109.16540 * 303.02183 * 28 27 26 30 30 O 1.42901 * 109.41104 * 57.60793 * 29 28 27 31 31 H 0.97001 * 120.00336 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.77222 * 356.08701 * 10 9 7 33 33 H 1.08992 * 109.77853 * 235.27283 * 10 9 7 34 34 H 1.08995 * 109.20723 * 287.13003 * 11 10 9 35 35 H 1.09003 * 109.19783 * 167.82761 * 11 10 9 36 36 H 1.08000 * 119.70813 * 359.40306 * 13 12 11 37 37 H 1.08002 * 120.08531 * 179.97438 * 14 13 12 38 38 H 1.08001 * 120.13745 * 180.22451 * 15 14 13 39 39 H 1.08004 * 119.74867 * 179.97438 * 16 15 14 40 40 H 1.08997 * 109.47532 * 183.44847 * 20 18 9 41 41 H 1.09007 * 109.47361 * 63.44863 * 20 18 9 42 42 H 0.97004 * 120.00011 * 3.54357 * 21 20 18 43 43 H 1.09004 * 109.52244 * 302.31695 * 26 24 22 44 44 H 1.09000 * 109.52008 * 62.50497 * 26 24 22 45 45 H 1.08993 * 109.54810 * 176.85179 * 27 26 24 46 46 H 1.09003 * 109.54229 * 297.02700 * 27 26 24 47 47 H 1.09001 * 109.52684 * 62.92805 * 28 27 26 48 48 H 1.08998 * 109.52475 * 183.05502 * 28 27 26 49 49 H 1.09003 * 109.48036 * 177.58872 * 29 28 27 50 50 H 1.08998 * 109.48016 * 297.62532 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1072 -1.3947 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0103 -1.2022 0.0005 8 1 3.0703 -1.2138 -0.2060 9 7 1.3510 -2.3733 0.2628 10 6 0.1853 -2.4114 1.1618 11 6 -1.0310 -2.8261 0.3353 12 6 -0.7150 -4.0255 -0.5189 13 6 -1.7832 -4.7732 -0.9999 14 6 -1.5646 -5.8762 -1.7982 15 6 -0.2721 -6.2439 -2.1240 16 6 0.7903 -5.5064 -1.6442 17 6 0.5716 -4.3973 -0.8381 18 6 1.7775 -3.6406 -0.3403 19 1 2.2988 -4.2396 0.4064 20 6 2.7189 -3.3554 -1.5120 21 7 2.0478 -2.4797 -2.4758 22 6 2.6624 -2.1506 -3.6292 23 8 3.7293 -2.6531 -3.9127 24 6 2.0212 -1.1630 -4.5696 25 1 1.8483 -0.2225 -4.0465 26 6 0.6861 -1.7238 -5.0664 27 6 0.0695 -0.7419 -6.0675 28 6 1.0616 -0.5045 -7.2101 29 6 2.3822 0.0093 -6.6305 30 8 2.8856 -0.9363 -5.6847 31 1 -0.4851 0.8400 -0.0004 32 1 0.0194 -1.4239 1.5923 33 1 0.3561 -3.1372 1.9567 34 1 -1.3279 -1.9969 -0.3068 35 1 -1.8539 -3.0711 1.0068 36 1 -2.7935 -4.4876 -0.7465 37 1 -2.4007 -6.4517 -2.1673 38 1 -0.0952 -7.1047 -2.7518 39 1 1.8001 -5.7935 -1.8980 40 1 2.9877 -4.2929 -1.9988 41 1 3.6204 -2.8661 -1.1431 42 1 1.1609 -2.1367 -2.2839 43 1 0.8534 -2.6842 -5.5541 44 1 0.0097 -1.8559 -4.2220 45 1 -0.8539 -1.1607 -6.4674 46 1 -0.1451 0.2024 -5.5671 47 1 1.2365 -1.4402 -7.7411 48 1 0.6533 0.2346 -7.8994 49 1 3.1061 0.1394 -7.4350 50 1 2.2140 0.9652 -6.1345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948910146.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:23 Heat of formation + Delta-G solvation = -39.513923 kcal Electronic energy + Delta-G solvation = -32481.217356 eV Core-core repulsion = 28473.394513 eV Total energy + Delta-G solvation = -4007.822843 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.98194 -39.39064 -37.93396 -36.25425 -34.14576 -33.49648 -32.32536 -32.08051 -30.98424 -29.92795 -28.74866 -26.70810 -25.48461 -24.39148 -23.74546 -22.49916 -22.05429 -20.84034 -20.34793 -19.74768 -18.88332 -17.22631 -16.69676 -16.18096 -15.94719 -15.53780 -15.37081 -15.05788 -14.64387 -14.45737 -14.23194 -14.19661 -13.94435 -13.74622 -13.39918 -13.11508 -12.93770 -12.88866 -12.57978 -12.43033 -12.32526 -11.96876 -11.66360 -11.39104 -11.24426 -11.16224 -11.14220 -11.06955 -11.00541 -10.86993 -10.70151 -10.44336 -10.37013 -10.13855 -9.83098 -9.58294 -9.38986 -9.05185 -8.62487 -8.28563 -8.19776 -7.94461 -6.78638 -5.95401 -3.43700 1.85033 1.91448 3.21743 3.27376 3.35801 3.39596 3.41697 4.25545 4.33321 4.41628 4.83979 4.85382 4.90546 5.04593 5.16758 5.19827 5.27219 5.35014 5.36186 5.41688 5.44666 5.53609 5.55061 5.64667 5.72862 5.77036 5.84340 5.88266 5.93777 6.01488 6.04306 6.10593 6.24911 6.30077 6.30871 6.33609 6.44817 6.45927 6.58838 6.65770 6.72631 6.94210 6.98949 7.17886 7.30384 7.31799 7.34263 7.52727 7.57888 7.71687 8.26893 8.33080 8.92561 9.04128 9.62699 10.23016 11.10941 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008161 B = 0.005817 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3430.029095 B = 4811.950626 C = 6616.756118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.011 3.989 3 Si 0.896 3.104 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.067 0.933 9 N -0.586 5.586 10 C 0.167 3.833 11 C -0.096 4.096 12 C -0.044 4.044 13 C -0.135 4.135 14 C -0.129 4.129 15 C -0.138 4.138 16 C -0.116 4.116 17 C -0.087 4.087 18 C 0.192 3.808 19 H 0.054 0.946 20 C 0.139 3.861 21 N -0.684 5.684 22 C 0.518 3.482 23 O -0.547 6.547 24 C 0.076 3.924 25 H 0.085 0.915 26 C -0.142 4.142 27 C -0.120 4.120 28 C -0.156 4.156 29 C 0.059 3.941 30 O -0.356 6.356 31 H 0.254 0.746 32 H 0.095 0.905 33 H 0.005 0.995 34 H 0.103 0.897 35 H 0.047 0.953 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.415 0.585 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.094 0.906 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.215 -4.566 -7.193 9.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.188 4.188 3 Si 0.726 3.274 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.042 3.958 11 C -0.134 4.134 12 C -0.044 4.044 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.157 4.157 16 C -0.135 4.135 17 C -0.088 4.088 18 C 0.085 3.915 19 H 0.071 0.929 20 C 0.015 3.985 21 N -0.337 5.337 22 C 0.303 3.697 23 O -0.425 6.425 24 C 0.014 3.986 25 H 0.103 0.897 26 C -0.180 4.180 27 C -0.158 4.158 28 C -0.194 4.194 29 C -0.018 4.018 30 O -0.274 6.274 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.023 0.977 34 H 0.121 0.879 35 H 0.065 0.935 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.252 0.748 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.112 0.888 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.354 -4.834 -7.367 9.428 hybrid contribution -0.495 1.205 -0.025 1.303 sum -3.849 -3.629 -7.392 9.090 Atomic orbital electron populations 1.69892 1.04985 1.25488 1.53783 1.25031 0.95286 0.98025 1.00423 0.86374 0.79484 0.83882 0.77674 1.21502 1.21566 1.20373 1.19026 0.91411 0.83390 1.43462 0.91540 1.44148 1.34348 1.02350 1.50077 1.20769 0.84887 1.00273 0.89882 1.21010 0.99252 0.94837 0.98327 1.19883 0.91817 0.95950 0.96745 1.21191 0.98525 0.96178 0.99397 1.20900 0.96525 0.97723 0.99545 1.20880 0.92978 1.00239 1.01557 1.21121 0.98673 0.95460 0.98241 1.20356 0.95638 0.95413 0.97428 1.19842 0.90492 0.88845 0.92279 0.92909 1.21343 0.95600 0.93046 0.88507 1.45603 1.21515 1.49412 1.17123 1.19908 0.85416 0.82341 0.82071 1.90642 1.22450 1.53956 1.75437 1.21895 0.90015 0.98650 0.88003 0.89740 1.22095 0.95913 0.99745 1.00289 1.21574 0.98284 0.99789 0.96148 1.22205 0.96480 1.02278 0.98440 1.22614 0.95521 0.91618 0.92097 1.88031 1.43676 1.62517 1.33131 0.93539 0.88708 0.97699 0.87942 0.93478 0.87026 0.87205 0.87112 0.86738 0.92270 0.91395 0.74793 0.90820 0.89983 0.91253 0.91426 0.91069 0.91008 0.88769 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.81 9.94 55.49 0.55 -21.25 16 2 C 0.01 0.28 5.04 -17.43 -0.09 0.19 16 3 Si 0.90 20.18 29.57 -169.99 -5.03 15.16 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.24 -5.76 7.27 -15.06 -0.11 -5.87 16 8 H 0.07 1.65 6.62 -52.49 -0.35 1.30 16 9 N -0.59 -12.62 2.67 -166.31 -0.44 -13.06 16 10 C 0.17 3.51 5.57 -3.74 -0.02 3.49 16 11 C -0.10 -1.83 5.75 -28.04 -0.16 -1.99 16 12 C -0.04 -0.79 5.76 -104.60 -0.60 -1.39 16 13 C -0.13 -2.14 9.59 -39.43 -0.38 -2.52 16 14 C -0.13 -1.87 10.04 -39.69 -0.40 -2.26 16 15 C -0.14 -2.03 10.05 -39.68 -0.40 -2.43 16 16 C -0.12 -1.87 9.03 -39.46 -0.36 -2.23 16 17 C -0.09 -1.54 4.93 -104.55 -0.52 -2.06 16 18 C 0.19 3.65 3.17 -68.93 -0.22 3.43 16 19 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 20 C 0.14 2.64 4.38 -4.05 -0.02 2.63 16 21 N -0.68 -13.35 4.21 -60.30 -0.25 -13.61 16 22 C 0.52 10.49 7.20 -10.99 -0.08 10.41 16 23 O -0.55 -12.72 16.50 -14.33 -0.24 -12.96 16 24 C 0.08 1.32 3.06 -27.84 -0.09 1.24 16 25 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 26 C -0.14 -2.09 5.32 -26.59 -0.14 -2.24 16 27 C -0.12 -1.45 6.03 -26.55 -0.16 -1.61 16 28 C -0.16 -1.74 6.14 -26.59 -0.16 -1.91 16 29 C 0.06 0.76 6.84 37.21 0.25 1.01 16 30 O -0.36 -6.29 9.94 -55.12 -0.55 -6.84 16 31 H 0.25 6.17 8.31 -40.82 -0.34 5.83 16 32 H 0.09 2.22 6.09 -51.93 -0.32 1.90 16 33 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 34 H 0.10 2.20 6.96 -51.93 -0.36 1.84 16 35 H 0.05 0.82 8.11 -51.93 -0.42 0.40 16 36 H 0.11 1.59 8.05 -52.49 -0.42 1.17 16 37 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.11 1.72 6.68 -52.48 -0.35 1.37 16 40 H 0.06 1.06 6.49 -51.93 -0.34 0.72 16 41 H 0.07 1.38 7.01 -51.92 -0.36 1.02 16 42 H 0.41 8.49 6.97 -40.82 -0.28 8.20 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.08 1.24 7.68 -51.93 -0.40 0.84 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 385.85 15.07 5.81 5.81 Total: -1.00 -27.11 385.85 -11.60 -38.70 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -7.81 Total: 12.15 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -3.64 Total: -4.11 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.15 Total: -47.92 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.78 Total: -19.80 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -27.11 -11.60 -38.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948910146.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.809 kcal (2) G-P(sol) polarization free energy of solvation -27.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds