Wall clock time and date at job start Wed Apr 1 2020 02:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99870 * 2 1 4 4 H 1.48496 * 109.46990 * 274.98568 * 3 2 1 5 5 H 1.48495 * 109.47009 * 34.98455 * 3 2 1 6 6 H 1.48501 * 109.46951 * 154.98402 * 3 2 1 7 7 C 1.38818 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99775 * 167.23943 * 7 2 1 9 9 N 1.36931 * 119.99886 * 347.24682 * 7 2 1 10 10 C 1.47248 * 121.34607 * 328.89575 * 9 7 2 11 11 C 1.52789 * 107.87819 * 115.67402 * 10 9 7 12 12 C 1.50608 * 110.84963 * 47.48285 * 11 10 9 13 13 C 1.38977 * 117.60971 * 160.41264 * 12 11 10 14 14 C 1.37909 * 120.58288 * 179.38078 * 13 12 11 15 15 C 1.38265 * 119.82127 * 0.02562 * 14 13 12 16 16 C 1.37949 * 119.72171 * 0.20056 * 15 14 13 17 17 C 1.37671 * 122.86553 * 340.16797 * 12 11 10 18 18 C 1.46692 * 121.34149 * 148.90083 * 9 7 2 19 19 H 1.08999 * 109.40001 * 104.24075 * 18 9 7 20 20 C 1.52990 * 109.43596 * 344.34439 * 18 9 7 21 21 N 1.46499 * 109.47650 * 303.45037 * 20 18 9 22 22 C 1.34774 * 120.00668 * 183.54508 * 21 20 18 23 23 O 1.21283 * 119.99731 * 5.19737 * 22 21 20 24 24 C 1.50694 * 120.00263 * 184.92270 * 22 21 20 25 25 H 1.08996 * 109.48504 * 57.46264 * 24 22 21 26 26 C 1.53092 * 109.48144 * 297.43642 * 24 22 21 27 27 C 1.53180 * 109.16752 * 182.40950 * 26 24 22 28 28 C 1.53172 * 109.03486 * 56.97924 * 27 26 24 29 29 C 1.53099 * 109.16540 * 303.02183 * 28 27 26 30 30 O 1.42901 * 109.41104 * 57.60793 * 29 28 27 31 31 H 0.97001 * 120.00336 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.77222 * 356.08701 * 10 9 7 33 33 H 1.08992 * 109.77853 * 235.27283 * 10 9 7 34 34 H 1.08995 * 109.20723 * 287.13003 * 11 10 9 35 35 H 1.09003 * 109.19783 * 167.82761 * 11 10 9 36 36 H 1.08000 * 119.70813 * 359.40306 * 13 12 11 37 37 H 1.08002 * 120.08531 * 179.97438 * 14 13 12 38 38 H 1.08001 * 120.13745 * 180.22451 * 15 14 13 39 39 H 1.08004 * 119.74867 * 179.97438 * 16 15 14 40 40 H 1.08997 * 109.47532 * 183.44847 * 20 18 9 41 41 H 1.09007 * 109.47361 * 63.44863 * 20 18 9 42 42 H 0.97004 * 120.00011 * 3.54357 * 21 20 18 43 43 H 1.09004 * 109.52244 * 302.31695 * 26 24 22 44 44 H 1.09000 * 109.52008 * 62.50497 * 26 24 22 45 45 H 1.08993 * 109.54810 * 176.85179 * 27 26 24 46 46 H 1.09003 * 109.54229 * 297.02700 * 27 26 24 47 47 H 1.09001 * 109.52684 * 62.92805 * 28 27 26 48 48 H 1.08998 * 109.52475 * 183.05502 * 28 27 26 49 49 H 1.09003 * 109.48036 * 177.58872 * 29 28 27 50 50 H 1.08998 * 109.48016 * 297.62532 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1072 -1.3947 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0103 -1.2022 0.0005 8 1 3.0703 -1.2138 -0.2060 9 7 1.3510 -2.3733 0.2628 10 6 0.1853 -2.4114 1.1618 11 6 -1.0310 -2.8261 0.3353 12 6 -0.7150 -4.0255 -0.5189 13 6 -1.7832 -4.7732 -0.9999 14 6 -1.5646 -5.8762 -1.7982 15 6 -0.2721 -6.2439 -2.1240 16 6 0.7903 -5.5064 -1.6442 17 6 0.5716 -4.3973 -0.8381 18 6 1.7775 -3.6406 -0.3403 19 1 2.2988 -4.2396 0.4064 20 6 2.7189 -3.3554 -1.5120 21 7 2.0478 -2.4797 -2.4758 22 6 2.6624 -2.1506 -3.6292 23 8 3.7293 -2.6531 -3.9127 24 6 2.0212 -1.1630 -4.5696 25 1 1.8483 -0.2225 -4.0465 26 6 0.6861 -1.7238 -5.0664 27 6 0.0695 -0.7419 -6.0675 28 6 1.0616 -0.5045 -7.2101 29 6 2.3822 0.0093 -6.6305 30 8 2.8856 -0.9363 -5.6847 31 1 -0.4851 0.8400 -0.0004 32 1 0.0194 -1.4239 1.5923 33 1 0.3561 -3.1372 1.9567 34 1 -1.3279 -1.9969 -0.3068 35 1 -1.8539 -3.0711 1.0068 36 1 -2.7935 -4.4876 -0.7465 37 1 -2.4007 -6.4517 -2.1673 38 1 -0.0952 -7.1047 -2.7518 39 1 1.8001 -5.7935 -1.8980 40 1 2.9877 -4.2929 -1.9988 41 1 3.6204 -2.8661 -1.1431 42 1 1.1609 -2.1367 -2.2839 43 1 0.8534 -2.6842 -5.5541 44 1 0.0097 -1.8559 -4.2220 45 1 -0.8539 -1.1607 -6.4674 46 1 -0.1451 0.2024 -5.5671 47 1 1.2365 -1.4402 -7.7411 48 1 0.6533 0.2346 -7.8994 49 1 3.1061 0.1394 -7.4350 50 1 2.2140 0.9652 -6.1345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948910146.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:22 Heat of formation + Delta-G solvation = -52.061739 kcal Electronic energy + Delta-G solvation = -32481.761470 eV Core-core repulsion = 28473.394513 eV Total energy + Delta-G solvation = -4008.366957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.42231 -40.71166 -39.33862 -37.78321 -35.72997 -34.66261 -33.98973 -33.49229 -32.22117 -31.46885 -30.13659 -28.21052 -26.94564 -25.85474 -24.87185 -23.92231 -23.55437 -22.21835 -21.58289 -21.14432 -20.39083 -18.75621 -18.26771 -17.60381 -17.40300 -16.92021 -16.69873 -16.51141 -16.01325 -15.90803 -15.59687 -15.48642 -15.32974 -15.16870 -14.87630 -14.53638 -14.39853 -14.29650 -13.79423 -13.72028 -13.64370 -13.48129 -13.17193 -12.97961 -12.80602 -12.67042 -12.52834 -12.50004 -12.23094 -12.21613 -12.08489 -11.98344 -11.78970 -11.46010 -11.41967 -11.16742 -10.72814 -10.48341 -10.44768 -9.83929 -9.52552 -9.26041 -8.55115 -7.81942 -5.30095 0.61507 0.66147 1.41971 1.48703 1.54187 1.63069 2.00995 2.50067 2.99943 3.09624 3.34558 3.54363 3.66549 3.74761 3.86513 3.98738 4.00155 4.01518 4.06436 4.18275 4.21929 4.28438 4.34648 4.46412 4.58055 4.59547 4.65483 4.74622 4.76203 4.80683 4.84086 4.86224 4.97075 4.98997 5.02792 5.04348 5.08688 5.09912 5.29261 5.31483 5.31845 5.59297 5.61094 5.68407 5.74658 5.75720 5.92568 6.04826 6.10264 6.29338 6.44879 6.70958 7.20241 7.30905 7.82552 8.41215 9.21525 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008161 B = 0.005817 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3430.029095 B = 4811.950626 C = 6616.756118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.017 4.017 3 Si 0.934 3.066 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.050 0.950 9 N -0.595 5.595 10 C 0.169 3.831 11 C -0.082 4.082 12 C -0.066 4.066 13 C -0.137 4.137 14 C -0.122 4.122 15 C -0.133 4.133 16 C -0.124 4.124 17 C -0.100 4.100 18 C 0.195 3.805 19 H 0.056 0.944 20 C 0.144 3.856 21 N -0.678 5.678 22 C 0.512 3.488 23 O -0.582 6.582 24 C 0.080 3.920 25 H 0.076 0.924 26 C -0.134 4.134 27 C -0.118 4.118 28 C -0.149 4.149 29 C 0.047 3.953 30 O -0.385 6.385 31 H 0.250 0.750 32 H 0.068 0.932 33 H 0.010 0.990 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.127 0.873 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.121 0.879 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.411 0.589 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.101 0.899 49 H 0.113 0.887 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 -5.859 -8.956 12.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.215 4.215 3 Si 0.765 3.235 4 H -0.219 1.219 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.370 4.370 8 H 0.068 0.932 9 N -0.319 5.319 10 C 0.044 3.956 11 C -0.121 4.121 12 C -0.066 4.066 13 C -0.155 4.155 14 C -0.140 4.140 15 C -0.151 4.151 16 C -0.142 4.142 17 C -0.101 4.101 18 C 0.089 3.911 19 H 0.074 0.926 20 C 0.019 3.981 21 N -0.328 5.328 22 C 0.298 3.702 23 O -0.463 6.463 24 C 0.019 3.981 25 H 0.094 0.906 26 C -0.172 4.172 27 C -0.156 4.156 28 C -0.187 4.187 29 C -0.029 4.029 30 O -0.304 6.304 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.028 0.972 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.145 0.855 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.139 0.861 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.248 0.752 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.120 0.880 49 H 0.131 0.869 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.095 -6.133 -9.123 12.116 hybrid contribution 0.080 1.546 0.535 1.638 sum -5.015 -4.587 -8.588 10.952 Atomic orbital electron populations 1.69982 1.05178 1.25254 1.54408 1.25341 0.95789 0.99258 1.01120 0.85791 0.78353 0.82305 0.77062 1.21932 1.21756 1.21185 1.18905 0.90778 0.84454 1.42818 0.93194 1.44182 1.34413 1.02613 1.50655 1.20676 0.85765 0.98904 0.90285 1.20746 0.98543 0.94764 0.98005 1.19841 0.92651 0.96246 0.97847 1.21379 0.98588 0.96271 0.99253 1.21275 0.97545 0.96983 0.98156 1.21242 0.92576 1.00448 1.00832 1.21239 0.99775 0.95157 0.98043 1.20177 0.94849 0.96343 0.98778 1.19817 0.91330 0.87869 0.92108 0.92631 1.21298 0.94836 0.93238 0.88685 1.45596 1.21142 1.49095 1.16982 1.20485 0.84973 0.82388 0.82346 1.90607 1.23943 1.55549 1.76234 1.21797 0.91077 0.97389 0.87850 0.90588 1.22030 0.94163 1.00291 1.00727 1.21608 0.99165 0.99054 0.95760 1.22176 0.95053 1.03106 0.98331 1.22957 0.97258 0.90938 0.91746 1.87989 1.44788 1.63896 1.33679 0.93994 0.91405 0.97154 0.90566 0.91988 0.85462 0.83913 0.84248 0.86080 0.90997 0.93435 0.75208 0.91093 0.90709 0.89167 0.91411 0.91034 0.88033 0.86855 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.84 9.94 21.65 0.22 -44.62 16 2 C -0.02 -0.85 5.04 84.86 0.43 -0.42 16 3 Si 0.93 42.33 29.57 68.60 2.03 44.36 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.24 -11.67 7.27 84.04 0.61 -11.06 16 8 H 0.05 2.59 6.62 -2.91 -0.02 2.57 16 9 N -0.59 -26.22 2.67 -680.08 -1.82 -28.04 16 10 C 0.17 7.21 5.57 86.17 0.48 7.69 16 11 C -0.08 -3.13 5.75 29.75 0.17 -2.96 16 12 C -0.07 -2.29 5.76 -19.85 -0.11 -2.40 16 13 C -0.14 -3.98 9.59 22.37 0.21 -3.77 16 14 C -0.12 -3.04 10.04 22.20 0.22 -2.82 16 15 C -0.13 -3.42 10.05 22.21 0.22 -3.20 16 16 C -0.12 -3.74 9.03 22.35 0.20 -3.53 16 17 C -0.10 -3.48 4.93 -19.82 -0.10 -3.58 16 18 C 0.20 7.49 3.17 44.24 0.14 7.63 16 19 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 20 C 0.14 5.58 4.38 86.38 0.38 5.96 16 21 N -0.68 -27.07 4.21 -463.08 -1.95 -29.02 16 22 C 0.51 21.22 7.20 87.66 0.63 21.85 16 23 O -0.58 -27.79 16.50 15.98 0.26 -27.53 16 24 C 0.08 2.83 3.06 29.88 0.09 2.92 16 25 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 26 C -0.13 -3.84 5.32 30.69 0.16 -3.67 16 27 C -0.12 -2.60 6.03 30.71 0.19 -2.41 16 28 C -0.15 -2.92 6.14 30.68 0.19 -2.74 16 29 C 0.05 1.15 6.84 72.02 0.49 1.64 16 30 O -0.38 -13.56 9.94 -129.96 -1.29 -14.85 16 31 H 0.25 12.35 8.31 -92.71 -0.77 11.58 16 32 H 0.07 3.26 6.09 -2.39 -0.01 3.25 16 33 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.08 3.32 6.96 -2.39 -0.02 3.30 16 35 H 0.06 2.11 8.11 -2.39 -0.02 2.09 16 36 H 0.13 3.25 8.05 -2.91 -0.02 3.22 16 37 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 38 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 39 H 0.12 3.43 6.68 -2.91 -0.02 3.41 16 40 H 0.07 2.60 6.49 -2.39 -0.02 2.58 16 41 H 0.05 2.03 7.01 -2.38 -0.02 2.01 16 42 H 0.41 17.22 6.97 -92.71 -0.65 16.57 16 43 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.07 2.23 7.68 -2.39 -0.02 2.21 16 45 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 50 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -59.65 385.85 2.36 -57.29 By element: Atomic # 1 Polarization: 36.98 SS G_CDS: 0.30 Total: 37.28 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 4.61 Total: 5.13 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -3.55 Total: -101.69 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -1.03 Total: -42.38 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -59.65 2.36 -57.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948910146.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.230 kcal (2) G-P(sol) polarization free energy of solvation -59.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds