Wall clock time and date at job start Wed Apr 1 2020 03:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00163 * 2 1 4 4 H 1.48496 * 109.47517 * 274.15624 * 3 2 1 5 5 H 1.48508 * 109.46949 * 34.15356 * 3 2 1 6 6 H 1.48501 * 109.47278 * 154.15427 * 3 2 1 7 7 C 1.38813 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99797 * 197.03023 * 7 2 1 9 9 N 1.36935 * 119.99944 * 17.03355 * 7 2 1 10 10 C 1.47153 * 120.98814 * 26.60141 * 9 7 2 11 11 C 1.53295 * 108.37642 * 129.38533 * 10 9 7 12 12 O 1.42966 * 109.22667 * 52.34942 * 11 10 9 13 13 C 1.42897 * 114.20802 * 297.50931 * 12 11 10 14 14 C 1.52989 * 109.56028 * 302.52233 * 13 12 11 15 15 C 1.53196 * 109.34589 * 300.96175 * 14 13 12 16 16 N 1.46926 * 108.77549 * 305.42292 * 15 14 13 17 17 C 1.34781 * 120.64556 * 233.64962 * 16 15 14 18 18 O 1.21283 * 119.99717 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99936 * 180.02562 * 17 16 15 20 20 C 1.50703 * 109.46667 * 180.02562 * 19 17 16 21 21 C 1.38239 * 119.99752 * 90.00628 * 20 19 17 22 22 C 1.38240 * 119.99514 * 180.25435 * 21 20 19 23 23 C 1.38230 * 120.00140 * 359.52645 * 22 21 20 24 24 C 1.38234 * 119.99793 * 0.42873 * 23 22 21 25 25 C 1.38233 * 120.00632 * 359.80377 * 24 23 22 26 26 C 1.46938 * 118.71411 * 53.93523 * 16 15 14 27 27 C 1.53002 * 109.54927 * 182.22514 * 13 12 11 28 28 C 1.47155 * 120.98638 * 206.57906 * 9 7 2 29 29 H 0.97007 * 119.99968 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.68325 * 249.10545 * 10 9 7 31 31 H 1.09004 * 109.68392 * 9.66147 * 10 9 7 32 32 H 1.08995 * 109.51691 * 172.27585 * 11 10 9 33 33 H 1.09003 * 109.51160 * 292.38272 * 11 10 9 34 34 H 1.08997 * 109.49300 * 180.99682 * 14 13 12 35 35 H 1.09000 * 109.50928 * 60.93370 * 14 13 12 36 36 H 1.09009 * 109.58308 * 185.64105 * 15 14 13 37 37 H 1.08995 * 109.70482 * 65.28626 * 15 14 13 38 38 H 1.09000 * 109.46835 * 60.00224 * 19 17 16 39 39 H 1.08993 * 109.47010 * 300.00530 * 19 17 16 40 40 H 1.07999 * 120.00108 * 359.97303 * 21 20 19 41 41 H 1.07998 * 119.99444 * 179.72143 * 22 21 20 42 42 H 1.07992 * 119.99858 * 180.21524 * 23 22 21 43 43 H 1.08008 * 119.99824 * 179.78553 * 24 23 22 44 44 H 1.07997 * 120.00311 * 179.97438 * 25 24 23 45 45 H 1.08997 * 109.59122 * 65.84493 * 26 16 15 46 46 H 1.08996 * 109.58685 * 186.27626 * 26 16 15 47 47 H 1.08991 * 109.49582 * 179.00008 * 27 13 12 48 48 H 1.09000 * 109.48880 * 299.04863 * 27 13 12 49 49 H 1.09001 * 109.67667 * 110.76586 * 28 9 7 50 50 H 1.09004 * 109.67662 * 350.22499 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4099 2.0972 -1.3963 5 1 1.4943 2.6258 0.7861 6 1 3.5889 1.4164 0.6104 7 6 2.0102 -1.2022 -0.0005 8 1 3.0547 -1.2227 0.2734 9 7 1.3706 -2.3619 -0.3484 10 6 0.2046 -2.3441 -1.2459 11 6 0.4395 -3.3665 -2.3637 12 8 0.7740 -4.6297 -1.7837 13 6 1.9826 -4.6227 -1.0212 14 6 3.1425 -4.1585 -1.9042 15 6 3.2769 -5.1025 -3.1032 16 7 3.4078 -6.4798 -2.6085 17 6 4.4402 -7.2541 -2.9971 18 8 5.2729 -6.8155 -3.7621 19 6 4.5599 -8.6650 -2.4811 20 6 5.7918 -9.3096 -3.0626 21 6 7.0014 -9.2110 -2.4006 22 6 8.1324 -9.7979 -2.9367 23 6 8.0519 -10.4916 -4.1296 24 6 6.8421 -10.5909 -4.7910 25 6 5.7120 -10.0000 -4.2575 26 6 2.3879 -6.9987 -1.6868 27 6 2.2665 -6.0324 -0.4987 28 6 1.8291 -3.6630 0.1637 29 1 -0.4850 0.8401 0.0004 30 1 -0.6928 -2.6105 -0.6874 31 1 0.0878 -1.3496 -1.6766 32 1 -0.4670 -3.4686 -2.9603 33 1 1.2579 -3.0291 -2.9997 34 1 4.0668 -4.1705 -1.3265 35 1 2.9480 -3.1462 -2.2583 36 1 4.1622 -4.8360 -3.6807 37 1 2.3916 -5.0234 -3.7342 38 1 3.6783 -9.2350 -2.7741 39 1 4.6374 -8.6488 -1.3940 40 1 7.0637 -8.6717 -1.4670 41 1 9.0783 -9.7170 -2.4218 42 1 8.9347 -10.9529 -4.5466 43 1 6.7798 -11.1300 -5.7249 44 1 4.7670 -10.0773 -4.7745 45 1 1.4306 -7.0694 -2.2032 46 1 2.6861 -7.9842 -1.3292 47 1 3.1976 -6.0297 0.0677 48 1 1.4488 -6.3523 0.1472 49 1 1.0957 -4.0604 0.8653 50 1 2.7895 -3.5423 0.6650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949395334.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:41 Heat of formation + Delta-G solvation = -25.025799 kcal Electronic energy + Delta-G solvation = -30925.607962 eV Core-core repulsion = 26918.413372 eV Total energy + Delta-G solvation = -4007.194591 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.54647 -39.50348 -38.55241 -36.12542 -34.38643 -33.21165 -32.44720 -31.16496 -31.04544 -30.92932 -28.60005 -27.72531 -26.35194 -23.74382 -23.41966 -22.89111 -22.74655 -21.79623 -20.88944 -19.33981 -18.55687 -17.24825 -16.98327 -16.85775 -15.87708 -15.84643 -15.32020 -15.14435 -15.11311 -14.75304 -14.46929 -14.37574 -13.82068 -13.64794 -13.59891 -13.51672 -13.28390 -13.17247 -12.83800 -12.68364 -12.48967 -12.18306 -11.98719 -11.90535 -11.52091 -11.29400 -11.17418 -11.12530 -11.05326 -10.93430 -10.73904 -10.58981 -10.25435 -10.19484 -9.97074 -9.83942 -9.43544 -9.05659 -9.02886 -8.85720 -8.57806 -8.46179 -6.73802 -5.85562 -3.29057 1.17163 1.26694 2.64399 3.02944 3.33134 3.40812 3.41670 3.66427 4.27396 4.41447 4.45327 4.59038 4.63456 4.82285 4.87417 4.93551 5.02379 5.05630 5.22643 5.24368 5.30807 5.32448 5.34601 5.39996 5.47092 5.50681 5.55729 5.71634 5.82472 5.85565 5.87660 5.98707 6.03947 6.10490 6.13627 6.20688 6.28620 6.34894 6.37670 6.40328 6.42537 6.47392 6.54468 6.70204 6.79950 6.84213 7.11541 7.46564 7.50489 7.70372 7.92049 8.20688 8.32409 9.10527 9.73455 10.30633 11.22150 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021609 B = 0.002393 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.443933 B =11697.047812 C =12262.320917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.141 3.859 11 C 0.036 3.964 12 O -0.381 6.381 13 C 0.106 3.894 14 C -0.148 4.148 15 C 0.118 3.882 16 N -0.607 5.607 17 C 0.514 3.486 18 O -0.539 6.539 19 C -0.103 4.103 20 C -0.063 4.063 21 C -0.105 4.105 22 C -0.120 4.120 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.106 4.106 26 C 0.112 3.888 27 C -0.118 4.118 28 C 0.126 3.874 29 H 0.254 0.746 30 H 0.026 0.974 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.025 0.975 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.148 -21.026 -5.509 23.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.085 0.915 9 N -0.315 5.315 10 C 0.016 3.984 11 C -0.042 4.042 12 O -0.301 6.301 13 C 0.065 3.935 14 C -0.187 4.187 15 C -0.004 4.004 16 N -0.341 5.341 17 C 0.302 3.698 18 O -0.416 6.416 19 C -0.143 4.143 20 C -0.063 4.063 21 C -0.123 4.123 22 C -0.138 4.138 23 C -0.141 4.141 24 C -0.138 4.138 25 C -0.124 4.124 26 C -0.011 4.011 27 C -0.157 4.157 28 C 0.000 4.000 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.043 0.957 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.370 -20.775 -5.917 23.166 hybrid contribution 0.359 1.319 0.165 1.377 sum 8.730 -19.456 -5.751 22.087 Atomic orbital electron populations 1.70035 1.05246 1.25583 1.53799 1.25037 0.95316 0.98431 1.00832 0.86263 0.79149 0.83635 0.77663 1.21410 1.21729 1.20375 1.19182 0.92574 0.84521 1.41913 0.91485 1.44042 1.34061 1.01039 1.52374 1.21406 0.89194 0.98173 0.89662 1.23324 0.98895 0.85244 0.96731 1.87763 1.41203 1.32349 1.68782 1.21794 0.84577 0.94517 0.92629 1.22346 0.98928 1.00429 0.96960 1.21566 1.02381 0.79895 0.96557 1.48172 1.25015 1.14079 1.46790 1.20457 0.80848 0.87233 0.81249 1.90708 1.40747 1.74459 1.35673 1.20727 0.97759 0.93565 1.02212 1.19323 0.94162 0.97458 0.95381 1.21000 0.92240 0.98990 1.00094 1.21101 0.98249 0.98124 0.96297 1.21124 0.97679 0.99660 0.95686 1.21089 0.92879 1.00090 0.99778 1.20978 0.98757 0.97621 0.95042 1.21807 0.92008 0.96693 0.90588 1.21945 1.02454 0.94067 0.97211 1.21517 0.98345 0.87284 0.92887 0.93555 0.95575 0.89015 0.90345 0.93798 0.91428 0.88869 0.89611 0.91362 0.88017 0.87922 0.86228 0.86140 0.86288 0.86185 0.86306 0.90302 0.90222 0.90512 0.89999 0.95702 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.62 11.17 55.49 0.62 -25.00 16 2 C 0.00 0.07 4.94 -17.43 -0.09 -0.02 16 3 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.25 -6.70 9.64 -15.06 -0.15 -6.85 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.24 2.55 -171.85 -0.44 -14.68 16 10 C 0.14 3.27 5.44 -3.53 -0.02 3.25 16 11 C 0.04 0.67 6.60 37.31 0.25 0.91 16 12 O -0.38 -6.75 9.00 -35.23 -0.32 -7.07 16 13 C 0.11 1.74 0.68 -90.49 -0.06 1.68 16 14 C -0.15 -2.43 4.33 -26.64 -0.12 -2.54 16 15 C 0.12 1.76 6.19 -3.71 -0.02 1.74 16 16 N -0.61 -7.90 2.97 -172.49 -0.51 -8.41 16 17 C 0.51 6.88 7.69 -10.98 -0.08 6.79 16 18 O -0.54 -9.34 15.45 5.56 0.09 -9.26 16 19 C -0.10 -0.97 4.18 -29.03 -0.12 -1.10 16 20 C -0.06 -0.68 4.37 -104.62 -0.46 -1.14 16 21 C -0.11 -1.11 9.70 -39.58 -0.38 -1.49 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.12 -1.13 10.05 -39.59 -0.40 -1.53 16 24 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 25 C -0.11 -1.09 9.70 -39.58 -0.38 -1.48 16 26 C 0.11 1.21 6.13 -3.48 -0.02 1.19 16 27 C -0.12 -1.48 5.12 -26.40 -0.14 -1.62 16 28 C 0.13 2.54 5.39 -3.55 -0.02 2.52 16 29 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 2.35 6.17 -51.93 -0.32 2.03 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.04 0.81 6.29 -51.93 -0.33 0.48 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 1.75 6.16 -51.93 -0.32 1.43 16 36 H 0.09 1.37 7.01 -51.92 -0.36 1.00 16 37 H 0.07 1.03 7.83 -51.93 -0.41 0.62 16 38 H 0.10 0.74 7.88 -51.93 -0.41 0.34 16 39 H 0.10 0.77 7.65 -51.93 -0.40 0.37 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 45 H 0.08 0.90 7.82 -51.93 -0.41 0.49 16 46 H 0.08 0.61 5.93 -51.93 -0.31 0.30 16 47 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 LS Contribution 388.32 15.07 5.85 5.85 Total: -1.00 -32.03 388.32 -10.61 -42.64 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.87 Total: 2.37 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -3.00 Total: -2.76 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.33 Total: -48.09 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.23 Total: -16.33 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.03 -10.61 -42.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949395334.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.615 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds