Wall clock time and date at job start Wed Apr 1 2020 03:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00163 * 2 1 4 4 H 1.48496 * 109.47517 * 274.15624 * 3 2 1 5 5 H 1.48508 * 109.46949 * 34.15356 * 3 2 1 6 6 H 1.48501 * 109.47278 * 154.15427 * 3 2 1 7 7 C 1.38813 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99797 * 197.03023 * 7 2 1 9 9 N 1.36935 * 119.99944 * 17.03355 * 7 2 1 10 10 C 1.47153 * 120.98814 * 26.60141 * 9 7 2 11 11 C 1.53295 * 108.37642 * 129.38533 * 10 9 7 12 12 O 1.42966 * 109.22667 * 52.34942 * 11 10 9 13 13 C 1.42897 * 114.20802 * 297.50931 * 12 11 10 14 14 C 1.52989 * 109.56028 * 302.52233 * 13 12 11 15 15 C 1.53196 * 109.34589 * 300.96175 * 14 13 12 16 16 N 1.46926 * 108.77549 * 305.42292 * 15 14 13 17 17 C 1.34781 * 120.64556 * 233.64962 * 16 15 14 18 18 O 1.21283 * 119.99717 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99936 * 180.02562 * 17 16 15 20 20 C 1.50703 * 109.46667 * 180.02562 * 19 17 16 21 21 C 1.38239 * 119.99752 * 90.00628 * 20 19 17 22 22 C 1.38240 * 119.99514 * 180.25435 * 21 20 19 23 23 C 1.38230 * 120.00140 * 359.52645 * 22 21 20 24 24 C 1.38234 * 119.99793 * 0.42873 * 23 22 21 25 25 C 1.38233 * 120.00632 * 359.80377 * 24 23 22 26 26 C 1.46938 * 118.71411 * 53.93523 * 16 15 14 27 27 C 1.53002 * 109.54927 * 182.22514 * 13 12 11 28 28 C 1.47155 * 120.98638 * 206.57906 * 9 7 2 29 29 H 0.97007 * 119.99968 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.68325 * 249.10545 * 10 9 7 31 31 H 1.09004 * 109.68392 * 9.66147 * 10 9 7 32 32 H 1.08995 * 109.51691 * 172.27585 * 11 10 9 33 33 H 1.09003 * 109.51160 * 292.38272 * 11 10 9 34 34 H 1.08997 * 109.49300 * 180.99682 * 14 13 12 35 35 H 1.09000 * 109.50928 * 60.93370 * 14 13 12 36 36 H 1.09009 * 109.58308 * 185.64105 * 15 14 13 37 37 H 1.08995 * 109.70482 * 65.28626 * 15 14 13 38 38 H 1.09000 * 109.46835 * 60.00224 * 19 17 16 39 39 H 1.08993 * 109.47010 * 300.00530 * 19 17 16 40 40 H 1.07999 * 120.00108 * 359.97303 * 21 20 19 41 41 H 1.07998 * 119.99444 * 179.72143 * 22 21 20 42 42 H 1.07992 * 119.99858 * 180.21524 * 23 22 21 43 43 H 1.08008 * 119.99824 * 179.78553 * 24 23 22 44 44 H 1.07997 * 120.00311 * 179.97438 * 25 24 23 45 45 H 1.08997 * 109.59122 * 65.84493 * 26 16 15 46 46 H 1.08996 * 109.58685 * 186.27626 * 26 16 15 47 47 H 1.08991 * 109.49582 * 179.00008 * 27 13 12 48 48 H 1.09000 * 109.48880 * 299.04863 * 27 13 12 49 49 H 1.09001 * 109.67667 * 110.76586 * 28 9 7 50 50 H 1.09004 * 109.67662 * 350.22499 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4099 2.0972 -1.3963 5 1 1.4943 2.6258 0.7861 6 1 3.5889 1.4164 0.6104 7 6 2.0102 -1.2022 -0.0005 8 1 3.0547 -1.2227 0.2734 9 7 1.3706 -2.3619 -0.3484 10 6 0.2046 -2.3441 -1.2459 11 6 0.4395 -3.3665 -2.3637 12 8 0.7740 -4.6297 -1.7837 13 6 1.9826 -4.6227 -1.0212 14 6 3.1425 -4.1585 -1.9042 15 6 3.2769 -5.1025 -3.1032 16 7 3.4078 -6.4798 -2.6085 17 6 4.4402 -7.2541 -2.9971 18 8 5.2729 -6.8155 -3.7621 19 6 4.5599 -8.6650 -2.4811 20 6 5.7918 -9.3096 -3.0626 21 6 7.0014 -9.2110 -2.4006 22 6 8.1324 -9.7979 -2.9367 23 6 8.0519 -10.4916 -4.1296 24 6 6.8421 -10.5909 -4.7910 25 6 5.7120 -10.0000 -4.2575 26 6 2.3879 -6.9987 -1.6868 27 6 2.2665 -6.0324 -0.4987 28 6 1.8291 -3.6630 0.1637 29 1 -0.4850 0.8401 0.0004 30 1 -0.6928 -2.6105 -0.6874 31 1 0.0878 -1.3496 -1.6766 32 1 -0.4670 -3.4686 -2.9603 33 1 1.2579 -3.0291 -2.9997 34 1 4.0668 -4.1705 -1.3265 35 1 2.9480 -3.1462 -2.2583 36 1 4.1622 -4.8360 -3.6807 37 1 2.3916 -5.0234 -3.7342 38 1 3.6783 -9.2350 -2.7741 39 1 4.6374 -8.6488 -1.3940 40 1 7.0637 -8.6717 -1.4670 41 1 9.0783 -9.7170 -2.4218 42 1 8.9347 -10.9529 -4.5466 43 1 6.7798 -11.1300 -5.7249 44 1 4.7670 -10.0773 -4.7745 45 1 1.4306 -7.0694 -2.2032 46 1 2.6861 -7.9842 -1.3292 47 1 3.1976 -6.0297 0.0677 48 1 1.4488 -6.3523 0.1472 49 1 1.0957 -4.0604 0.8653 50 1 2.7895 -3.5423 0.6650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949395334.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:40 Heat of formation + Delta-G solvation = -42.692938 kcal Electronic energy + Delta-G solvation = -30926.374067 eV Core-core repulsion = 26918.413372 eV Total energy + Delta-G solvation = -4007.960695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.67060 -40.57840 -39.53876 -37.42250 -36.13076 -34.12497 -33.72227 -32.93590 -32.13012 -31.72611 -30.03710 -28.78186 -27.89658 -25.30732 -24.70726 -24.27673 -23.43700 -22.82118 -22.14054 -20.60825 -19.81184 -18.81950 -18.25328 -17.69139 -17.04076 -16.87169 -16.74017 -16.56597 -16.14651 -15.87810 -15.77314 -15.61187 -15.50204 -15.13006 -14.65597 -14.60414 -14.48840 -14.21069 -13.95995 -13.82322 -13.39457 -13.31640 -13.17336 -13.05662 -12.97378 -12.84434 -12.69977 -12.45777 -12.27188 -12.17892 -12.05652 -11.94082 -11.82919 -11.72066 -11.70046 -11.06541 -10.80098 -10.72586 -10.44613 -9.76022 -9.62144 -9.58194 -8.69534 -7.90719 -5.37044 0.45807 0.56220 1.43379 1.45426 1.53739 1.65797 2.05024 2.45827 2.88746 2.94208 3.23214 3.52340 3.64706 3.74216 3.90557 3.94656 3.95583 3.99371 4.16145 4.19902 4.31344 4.32558 4.41279 4.43246 4.46325 4.55706 4.58835 4.64096 4.68663 4.73969 4.77658 4.81222 4.83083 4.84787 4.94210 5.00724 5.06876 5.10918 5.17371 5.20296 5.29072 5.36041 5.55698 5.57163 5.61020 5.63154 5.66413 5.71085 6.16800 6.29615 6.42590 6.48645 7.07363 7.20465 7.76636 8.30025 9.14317 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021609 B = 0.002393 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.443933 B =11697.047812 C =12262.320917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.049 4.049 3 Si 0.964 3.036 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.066 0.934 9 N -0.608 5.608 10 C 0.148 3.852 11 C 0.051 3.949 12 O -0.376 6.376 13 C 0.110 3.890 14 C -0.138 4.138 15 C 0.127 3.873 16 N -0.606 5.606 17 C 0.513 3.487 18 O -0.585 6.585 19 C -0.095 4.095 20 C -0.080 4.080 21 C -0.123 4.123 22 C -0.132 4.132 23 C -0.132 4.132 24 C -0.131 4.131 25 C -0.122 4.122 26 C 0.114 3.886 27 C -0.115 4.115 28 C 0.122 3.878 29 H 0.251 0.749 30 H 0.000 1.000 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.129 0.871 45 H 0.079 0.921 46 H 0.123 0.877 47 H 0.090 0.910 48 H 0.095 0.905 49 H 0.019 0.981 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.992 -23.620 -5.570 25.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.793 3.207 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.333 5.333 10 C 0.022 3.978 11 C -0.027 4.027 12 O -0.295 6.295 13 C 0.069 3.931 14 C -0.177 4.177 15 C 0.004 3.996 16 N -0.339 5.339 17 C 0.303 3.697 18 O -0.465 6.465 19 C -0.134 4.134 20 C -0.081 4.081 21 C -0.141 4.141 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.149 4.149 25 C -0.140 4.140 26 C -0.007 4.007 27 C -0.153 4.153 28 C -0.003 4.003 29 H 0.060 0.940 30 H 0.018 0.982 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.154 0.846 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.147 0.853 45 H 0.098 0.902 46 H 0.141 0.859 47 H 0.108 0.892 48 H 0.114 0.886 49 H 0.036 0.964 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.215 -23.413 -5.961 25.858 hybrid contribution 0.142 2.098 0.210 2.113 sum 9.356 -21.315 -5.750 23.978 Atomic orbital electron populations 1.70178 1.06548 1.25867 1.55416 1.25743 0.96037 1.01332 1.01356 0.85295 0.78195 0.79822 0.77398 1.21312 1.22143 1.19425 1.19451 0.92710 0.85739 1.40873 0.91601 1.44268 1.34059 1.01928 1.52997 1.21237 0.88108 0.98000 0.90464 1.23100 1.00143 0.84425 0.95059 1.87780 1.41824 1.31262 1.68675 1.21840 0.84054 0.96281 0.90879 1.22188 0.98705 0.99297 0.97462 1.21287 1.01596 0.81131 0.95568 1.48237 1.25590 1.13089 1.46970 1.21165 0.79780 0.88472 0.80296 1.90692 1.42382 1.75632 1.37814 1.20786 0.98446 0.90693 1.03490 1.19553 0.94795 0.97899 0.95816 1.21255 0.92694 0.99473 1.00723 1.21412 0.98870 0.98005 0.96702 1.21457 0.98486 0.99438 0.95581 1.21418 0.92861 1.00051 1.00542 1.21255 0.99607 0.97901 0.95243 1.21991 0.91587 0.97946 0.89216 1.21984 1.03640 0.91438 0.98242 1.21710 0.97855 0.86304 0.94464 0.94034 0.98233 0.92037 0.87886 0.93630 0.91674 0.91824 0.91087 0.91489 0.85211 0.85341 0.85549 0.84552 0.84256 0.84364 0.85300 0.90237 0.85869 0.89183 0.88638 0.96356 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.71 11.17 21.65 0.24 -54.47 16 2 C -0.05 -2.72 4.94 84.86 0.42 -2.30 16 3 Si 0.96 44.72 29.59 68.60 2.03 46.75 16 4 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.26 -13.95 9.64 84.03 0.81 -13.14 16 8 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 9 N -0.61 -29.89 2.55 -697.60 -1.78 -31.67 16 10 C 0.15 7.03 5.44 86.35 0.47 7.50 16 11 C 0.05 1.86 6.60 72.08 0.48 2.34 16 12 O -0.38 -12.74 9.00 -148.98 -1.34 -14.08 16 13 C 0.11 3.48 0.68 -10.71 -0.01 3.47 16 14 C -0.14 -4.44 4.33 30.66 0.13 -4.31 16 15 C 0.13 3.67 6.19 86.36 0.53 4.21 16 16 N -0.61 -14.21 2.97 -818.01 -2.43 -16.64 16 17 C 0.51 12.52 7.69 87.66 0.67 13.19 16 18 O -0.59 -19.82 15.45 -3.04 -0.05 -19.86 16 19 C -0.10 -1.46 4.18 29.10 0.12 -1.34 16 20 C -0.08 -1.56 4.37 -19.86 -0.09 -1.65 16 21 C -0.12 -2.40 9.70 22.27 0.22 -2.18 16 22 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 23 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 24 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 25 C -0.12 -2.29 9.70 22.27 0.22 -2.08 16 26 C 0.11 1.99 6.13 86.51 0.53 2.52 16 27 C -0.11 -2.49 5.12 30.81 0.16 -2.34 16 28 C 0.12 4.89 5.39 86.34 0.47 5.35 16 29 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 30 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.06 3.29 6.17 -2.38 -0.01 3.27 16 32 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.05 1.68 6.29 -2.39 -0.02 1.67 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.06 2.43 6.16 -2.39 -0.01 2.42 16 36 H 0.07 2.28 7.01 -2.38 -0.02 2.26 16 37 H 0.07 1.95 7.83 -2.39 -0.02 1.93 16 38 H 0.13 1.28 7.88 -2.39 -0.02 1.26 16 39 H 0.13 1.32 7.65 -2.39 -0.02 1.30 16 40 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 41 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 42 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 43 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 44 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 45 H 0.08 1.46 7.82 -2.39 -0.02 1.44 16 46 H 0.12 1.15 5.93 -2.39 -0.01 1.14 16 47 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.06 2.32 7.95 -2.38 -0.02 2.30 16 Total: -1.00 -72.14 388.32 3.40 -68.73 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.92 Total: 18.10 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 5.80 Total: 3.15 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -3.96 Total: -102.78 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.39 Total: -33.95 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -72.14 3.40 -68.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949395334.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.040 kcal (2) G-P(sol) polarization free energy of solvation -72.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds