Wall clock time and date at job start Wed Apr 1 2020 02:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00248 * 2 1 4 4 H 1.48501 * 109.46785 * 269.99915 * 3 2 1 5 5 H 1.48495 * 109.46937 * 30.00182 * 3 2 1 6 6 H 1.48493 * 109.46840 * 150.00214 * 3 2 1 7 7 C 1.38811 * 119.99381 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99609 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00474 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64704 * 359.95729 * 9 7 2 11 11 C 1.54329 * 107.27010 * 181.09811 * 10 9 7 12 12 H 1.08998 * 110.71697 * 263.82991 * 11 10 9 13 13 O 1.42899 * 110.72032 * 140.55789 * 11 10 9 14 14 C 1.55152 * 102.94400 * 22.19190 * 11 10 9 15 15 H 1.09001 * 111.04010 * 82.58571 * 14 11 10 16 16 C 1.52997 * 111.00513 * 206.42438 * 14 11 10 17 17 N 1.46501 * 109.47441 * 178.64952 * 16 14 11 18 18 C 1.34771 * 120.00550 * 179.97438 * 17 16 14 19 19 O 1.21555 * 119.99792 * 0.02562 * 18 17 16 20 20 C 1.47842 * 120.00528 * 179.97438 * 18 17 16 21 21 C 1.39599 * 120.14241 * 334.13202 * 20 18 17 22 22 C 1.37943 * 119.84948 * 180.29427 * 21 20 18 23 23 C 1.38381 * 120.14233 * 359.44303 * 22 21 20 24 24 C 1.38332 * 120.29642 * 0.30882 * 23 22 21 25 25 C 1.37977 * 120.14669 * 359.96681 * 24 23 22 26 26 C 1.50701 * 120.07715 * 179.97438 * 25 24 23 27 27 C 1.53782 * 113.61278 * 31.05568 * 26 25 24 28 28 C 1.53773 * 87.07969 * 220.02007 * 27 26 25 29 29 C 1.53780 * 87.08539 * 25.43425 * 28 27 26 30 30 C 1.47432 * 125.64829 * 180.02562 * 9 7 2 31 31 H 0.97003 * 119.99457 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.87920 * 300.50837 * 10 9 7 33 33 H 1.08997 * 109.88339 * 61.52181 * 10 9 7 34 34 H 0.96701 * 114.00140 * 66.47103 * 13 11 10 35 35 H 1.09005 * 109.47078 * 58.64968 * 16 14 11 36 36 H 1.08996 * 109.47333 * 298.65164 * 16 14 11 37 37 H 0.97001 * 119.99876 * 0.02562 * 17 16 14 38 38 H 1.07993 * 120.08003 * 0.04124 * 21 20 18 39 39 H 1.07995 * 119.92589 * 179.73116 * 22 21 20 40 40 H 1.08006 * 119.84857 * 180.27439 * 23 22 21 41 41 H 1.07998 * 119.92846 * 179.97438 * 24 23 22 42 42 H 1.08995 * 112.84828 * 162.36156 * 26 25 24 43 43 H 1.09001 * 113.61245 * 334.57076 * 27 26 25 44 44 H 1.08999 * 113.61013 * 105.47000 * 27 26 25 45 45 H 1.09005 * 113.61548 * 270.88570 * 28 27 26 46 46 H 1.09000 * 113.61551 * 139.98391 * 28 27 26 47 47 H 1.08997 * 113.61635 * 220.02262 * 29 28 27 48 48 H 1.08993 * 113.69205 * 89.12568 * 29 28 27 49 49 H 1.08999 * 110.36889 * 36.99569 * 30 9 7 50 50 H 1.08995 * 110.46104 * 274.71668 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3880 -0.0005 10 6 -0.1377 -2.5327 0.0009 11 6 -0.4486 -4.0441 0.0286 12 1 -0.6328 -4.4183 -0.9785 13 8 -1.5622 -4.3156 0.8819 14 6 0.8522 -4.6559 0.6122 15 1 0.8587 -4.5962 1.7006 16 6 1.0368 -6.1008 0.1441 17 7 2.2884 -6.6341 0.6873 18 6 2.6607 -7.8984 0.4059 19 8 1.9581 -8.5962 -0.2991 20 6 3.9242 -8.4364 0.9536 21 6 4.9704 -7.5722 1.2812 22 6 6.1488 -8.0813 1.7862 23 6 6.2909 -9.4442 1.9790 24 6 5.2561 -10.3055 1.6613 25 6 4.0742 -9.8099 1.1501 26 6 2.9482 -10.7498 0.8040 27 6 2.8970 -12.0036 1.6929 28 6 2.5480 -12.7947 0.4213 29 6 3.2697 -11.6906 -0.3692 30 6 1.9333 -3.7312 -0.0005 31 1 -0.4849 0.8401 0.0004 32 1 -0.5568 -2.0518 0.8848 33 1 -0.5556 -2.0822 -0.8994 34 1 -2.4002 -3.9543 0.5619 35 1 1.0725 -6.1281 -0.9450 36 1 0.2012 -6.7061 0.4954 37 1 2.8490 -6.0774 1.2502 38 1 4.8590 -6.5079 1.1358 39 1 6.9606 -7.4142 2.0360 40 1 7.2140 -9.8372 2.3788 41 1 5.3736 -11.3682 1.8137 42 1 1.9884 -10.2425 0.7066 43 1 3.8614 -12.2729 2.1238 44 1 2.0937 -11.9842 2.4293 45 1 1.4780 -12.8477 0.2199 46 1 3.0393 -13.7660 0.3626 47 1 2.7671 -11.4185 -1.2974 48 1 4.3358 -11.8732 -0.5029 49 1 2.8332 -3.7403 0.6144 50 1 2.1669 -4.0437 -1.0183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958636035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:17 Heat of formation + Delta-G solvation = -13.764953 kcal Electronic energy + Delta-G solvation = -30001.367630 eV Core-core repulsion = 25994.661346 eV Total energy + Delta-G solvation = -4006.706284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.77517 -39.11147 -38.16157 -37.75678 -35.19543 -34.66435 -32.40242 -31.53558 -31.26943 -29.57554 -27.60921 -26.01299 -25.76284 -25.37675 -24.08420 -23.16958 -21.90256 -20.78114 -20.22734 -19.83616 -19.27513 -17.99363 -16.98564 -16.73237 -16.51058 -15.92790 -15.72480 -15.31053 -15.09629 -14.75425 -14.69099 -14.49695 -14.11978 -13.88682 -13.50418 -13.38258 -12.97754 -12.69061 -12.67781 -12.60016 -12.45057 -12.11387 -12.05056 -11.93312 -11.65242 -11.47857 -11.25382 -11.00960 -10.84205 -10.78096 -10.62450 -10.58155 -10.39878 -10.08518 -9.94626 -9.85232 -9.62146 -9.23221 -9.20842 -8.99059 -8.80574 -8.68814 -6.93538 -5.78793 -3.13403 0.73679 1.12050 2.78706 3.18760 3.35805 3.40642 3.42768 3.60713 4.39191 4.40858 4.45175 4.58271 4.60670 4.69125 4.71621 4.79214 4.87448 4.94282 5.01008 5.14799 5.18284 5.25707 5.41577 5.47344 5.50923 5.53025 5.61103 5.65748 5.66404 5.71770 5.81415 5.84241 5.91832 5.95564 6.00999 6.02336 6.09128 6.18262 6.21531 6.23666 6.33118 6.40575 6.51083 6.57402 6.66473 6.79145 7.36428 7.46205 7.53429 7.71704 8.15951 8.17464 8.22164 9.12635 9.73243 10.37421 11.32810 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015993 B = 0.002400 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.345402 B =11662.196821 C =13068.272620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.151 3.849 11 C 0.083 3.917 12 H 0.057 0.943 13 O -0.566 6.566 14 C -0.108 4.108 15 H 0.089 0.911 16 C 0.134 3.866 17 N -0.718 5.718 18 C 0.556 3.444 19 O -0.533 6.533 20 C -0.130 4.130 21 C -0.084 4.084 22 C -0.132 4.132 23 C -0.096 4.096 24 C -0.130 4.130 25 C -0.013 4.013 26 C -0.084 4.084 27 C -0.141 4.141 28 C -0.141 4.141 29 C -0.123 4.123 30 C 0.142 3.858 31 H 0.253 0.747 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.376 0.624 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.402 0.598 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.041 0.959 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.034 -22.227 3.531 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.026 3.974 11 C 0.023 3.977 12 H 0.075 0.925 13 O -0.371 6.371 14 C -0.128 4.128 15 H 0.108 0.892 16 C 0.011 3.989 17 N -0.369 5.369 18 C 0.343 3.657 19 O -0.412 6.412 20 C -0.133 4.133 21 C -0.103 4.103 22 C -0.150 4.150 23 C -0.114 4.114 24 C -0.147 4.147 25 C -0.014 4.014 26 C -0.102 4.102 27 C -0.178 4.178 28 C -0.178 4.178 29 C -0.160 4.160 30 C 0.015 3.985 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.223 0.777 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.237 0.763 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.095 0.905 49 H 0.060 0.940 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 7.908 -22.761 3.371 24.331 hybrid contribution 0.394 1.688 -0.071 1.734 sum 8.302 -21.074 3.300 22.889 Atomic orbital electron populations 1.69942 1.04944 1.25183 1.56880 1.24824 0.95764 0.97801 1.02019 0.86088 0.78572 0.83305 0.77600 1.21539 1.21620 1.20641 1.19057 0.90448 0.82230 1.44142 0.90263 1.44303 1.01336 0.99926 1.87363 1.21833 0.85177 0.88530 1.01845 1.23113 0.85100 0.97888 0.91582 0.92529 1.86422 1.18894 1.80117 1.51690 1.22609 0.96188 0.92336 1.01672 0.89241 1.21386 0.85262 0.93630 0.98670 1.45994 1.24801 1.13538 1.52540 1.18263 0.85248 0.81595 0.80582 1.90706 1.54843 1.57780 1.37876 1.19859 0.95051 0.93967 1.04460 1.21387 0.92966 0.99599 0.96331 1.21103 0.97741 0.95583 1.00552 1.21317 0.98593 0.93563 0.97927 1.21002 0.92905 1.00100 1.00744 1.19823 0.94988 0.92218 0.94403 1.21954 0.98697 0.92867 0.96681 1.23116 1.01849 0.96098 0.96734 1.22798 1.00896 0.97519 0.96628 1.22841 1.00374 0.95232 0.97553 1.21598 0.94038 0.85813 0.97027 0.93654 0.92422 0.93594 0.77708 0.91275 0.91099 0.76336 0.85245 0.85419 0.85736 0.85432 0.85785 0.90033 0.91429 0.90082 0.91597 0.90970 0.90489 0.94041 0.95888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 10.31 55.49 0.57 -26.03 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.23 -6.28 10.28 -15.06 -0.15 -6.43 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.60 -14.93 3.39 -170.08 -0.58 -15.51 16 10 C 0.15 3.57 5.15 -3.06 -0.02 3.55 16 11 C 0.08 1.54 3.80 -24.90 -0.09 1.44 16 12 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 13 O -0.57 -9.77 13.39 -35.23 -0.47 -10.24 16 14 C -0.11 -1.85 2.83 -88.48 -0.25 -2.10 16 15 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 16 C 0.13 2.00 5.12 -4.04 -0.02 1.98 16 17 N -0.72 -9.58 5.32 -61.25 -0.33 -9.90 16 18 C 0.56 7.88 7.33 -12.33 -0.09 7.79 16 19 O -0.53 -8.89 13.85 5.32 0.07 -8.82 16 20 C -0.13 -1.59 5.85 -104.97 -0.61 -2.20 16 21 C -0.08 -0.86 9.37 -39.18 -0.37 -1.23 16 22 C -0.13 -1.15 10.03 -39.64 -0.40 -1.55 16 23 C -0.10 -0.78 10.04 -39.49 -0.40 -1.18 16 24 C -0.13 -1.18 8.94 -39.64 -0.35 -1.53 16 25 C -0.01 -0.15 5.30 -104.22 -0.55 -0.70 16 26 C -0.08 -0.94 3.13 -90.96 -0.29 -1.22 16 27 C -0.14 -1.23 7.44 -25.92 -0.19 -1.42 16 28 C -0.14 -1.18 8.08 -25.92 -0.21 -1.39 16 29 C -0.12 -1.22 7.57 -25.92 -0.20 -1.42 16 30 C 0.14 2.76 6.41 -2.53 -0.02 2.74 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.06 1.53 7.30 -51.93 -0.38 1.15 16 33 H 0.05 1.19 7.50 -51.93 -0.39 0.80 16 34 H 0.38 5.03 9.12 45.56 0.42 5.44 16 35 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.40 4.69 7.02 -40.82 -0.29 4.41 16 38 H 0.13 1.17 7.12 -52.49 -0.37 0.79 16 39 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 41 H 0.13 0.91 6.28 -52.49 -0.33 0.58 16 42 H 0.12 1.70 5.48 -51.93 -0.28 1.41 16 43 H 0.08 0.61 6.02 -51.93 -0.31 0.29 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16 49 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.02 0.45 8.00 -51.93 -0.42 0.04 16 LS Contribution 396.46 15.07 5.97 5.97 Total: -1.00 -32.49 396.46 -11.04 -43.53 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.96 Total: 9.47 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -4.30 Total: -5.18 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.33 Total: -51.44 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.40 Total: -19.06 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.49 -11.04 -43.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958636035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.761 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds