Wall clock time and date at job start Wed Apr 1 2020 02:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00248 * 2 1 4 4 H 1.48501 * 109.46785 * 269.99915 * 3 2 1 5 5 H 1.48495 * 109.46937 * 30.00182 * 3 2 1 6 6 H 1.48493 * 109.46840 * 150.00214 * 3 2 1 7 7 C 1.38811 * 119.99381 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99609 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00474 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64704 * 359.95729 * 9 7 2 11 11 C 1.54329 * 107.27010 * 181.09811 * 10 9 7 12 12 H 1.08998 * 110.71697 * 263.82991 * 11 10 9 13 13 O 1.42899 * 110.72032 * 140.55789 * 11 10 9 14 14 C 1.55152 * 102.94400 * 22.19190 * 11 10 9 15 15 H 1.09001 * 111.04010 * 82.58571 * 14 11 10 16 16 C 1.52997 * 111.00513 * 206.42438 * 14 11 10 17 17 N 1.46501 * 109.47441 * 178.64952 * 16 14 11 18 18 C 1.34771 * 120.00550 * 179.97438 * 17 16 14 19 19 O 1.21555 * 119.99792 * 0.02562 * 18 17 16 20 20 C 1.47842 * 120.00528 * 179.97438 * 18 17 16 21 21 C 1.39599 * 120.14241 * 334.13202 * 20 18 17 22 22 C 1.37943 * 119.84948 * 180.29427 * 21 20 18 23 23 C 1.38381 * 120.14233 * 359.44303 * 22 21 20 24 24 C 1.38332 * 120.29642 * 0.30882 * 23 22 21 25 25 C 1.37977 * 120.14669 * 359.96681 * 24 23 22 26 26 C 1.50701 * 120.07715 * 179.97438 * 25 24 23 27 27 C 1.53782 * 113.61278 * 31.05568 * 26 25 24 28 28 C 1.53773 * 87.07969 * 220.02007 * 27 26 25 29 29 C 1.53780 * 87.08539 * 25.43425 * 28 27 26 30 30 C 1.47432 * 125.64829 * 180.02562 * 9 7 2 31 31 H 0.97003 * 119.99457 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.87920 * 300.50837 * 10 9 7 33 33 H 1.08997 * 109.88339 * 61.52181 * 10 9 7 34 34 H 0.96701 * 114.00140 * 66.47103 * 13 11 10 35 35 H 1.09005 * 109.47078 * 58.64968 * 16 14 11 36 36 H 1.08996 * 109.47333 * 298.65164 * 16 14 11 37 37 H 0.97001 * 119.99876 * 0.02562 * 17 16 14 38 38 H 1.07993 * 120.08003 * 0.04124 * 21 20 18 39 39 H 1.07995 * 119.92589 * 179.73116 * 22 21 20 40 40 H 1.08006 * 119.84857 * 180.27439 * 23 22 21 41 41 H 1.07998 * 119.92846 * 179.97438 * 24 23 22 42 42 H 1.08995 * 112.84828 * 162.36156 * 26 25 24 43 43 H 1.09001 * 113.61245 * 334.57076 * 27 26 25 44 44 H 1.08999 * 113.61013 * 105.47000 * 27 26 25 45 45 H 1.09005 * 113.61548 * 270.88570 * 28 27 26 46 46 H 1.09000 * 113.61551 * 139.98391 * 28 27 26 47 47 H 1.08997 * 113.61635 * 220.02262 * 29 28 27 48 48 H 1.08993 * 113.69205 * 89.12568 * 29 28 27 49 49 H 1.08999 * 110.36889 * 36.99569 * 30 9 7 50 50 H 1.08995 * 110.46104 * 274.71668 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3880 -0.0005 10 6 -0.1377 -2.5327 0.0009 11 6 -0.4486 -4.0441 0.0286 12 1 -0.6328 -4.4183 -0.9785 13 8 -1.5622 -4.3156 0.8819 14 6 0.8522 -4.6559 0.6122 15 1 0.8587 -4.5962 1.7006 16 6 1.0368 -6.1008 0.1441 17 7 2.2884 -6.6341 0.6873 18 6 2.6607 -7.8984 0.4059 19 8 1.9581 -8.5962 -0.2991 20 6 3.9242 -8.4364 0.9536 21 6 4.9704 -7.5722 1.2812 22 6 6.1488 -8.0813 1.7862 23 6 6.2909 -9.4442 1.9790 24 6 5.2561 -10.3055 1.6613 25 6 4.0742 -9.8099 1.1501 26 6 2.9482 -10.7498 0.8040 27 6 2.8970 -12.0036 1.6929 28 6 2.5480 -12.7947 0.4213 29 6 3.2697 -11.6906 -0.3692 30 6 1.9333 -3.7312 -0.0005 31 1 -0.4849 0.8401 0.0004 32 1 -0.5568 -2.0518 0.8848 33 1 -0.5556 -2.0822 -0.8994 34 1 -2.4002 -3.9543 0.5619 35 1 1.0725 -6.1281 -0.9450 36 1 0.2012 -6.7061 0.4954 37 1 2.8490 -6.0774 1.2502 38 1 4.8590 -6.5079 1.1358 39 1 6.9606 -7.4142 2.0360 40 1 7.2140 -9.8372 2.3788 41 1 5.3736 -11.3682 1.8137 42 1 1.9884 -10.2425 0.7066 43 1 3.8614 -12.2729 2.1238 44 1 2.0937 -11.9842 2.4293 45 1 1.4780 -12.8477 0.2199 46 1 3.0393 -13.7660 0.3626 47 1 2.7671 -11.4185 -1.2974 48 1 4.3358 -11.8732 -0.5029 49 1 2.8332 -3.7403 0.6144 50 1 2.1669 -4.0437 -1.0183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958636035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:16 Heat of formation + Delta-G solvation = -34.911364 kcal Electronic energy + Delta-G solvation = -30002.284607 eV Core-core repulsion = 25994.661346 eV Total energy + Delta-G solvation = -4007.623261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.66518 -40.27995 -39.50423 -38.52324 -36.67285 -36.12091 -34.08122 -32.52153 -32.05844 -31.10317 -29.30983 -27.39503 -26.49569 -26.46750 -25.39083 -24.26266 -22.75432 -22.24804 -21.64667 -21.15864 -20.02481 -19.13746 -18.69914 -18.19277 -17.37903 -17.15448 -16.82339 -16.58547 -16.27052 -15.94736 -15.78268 -15.47980 -15.34713 -15.19640 -14.74315 -14.44911 -14.34417 -14.09398 -13.96113 -13.63902 -13.43035 -13.31181 -13.22720 -13.11729 -12.81360 -12.73789 -12.70033 -12.48222 -12.30865 -12.24773 -11.93184 -11.80390 -11.62122 -11.46039 -11.31404 -11.13371 -10.88847 -10.74725 -10.63327 -10.16604 -9.86848 -9.59570 -8.95414 -7.87551 -5.24230 -0.05062 0.41608 1.46021 1.47724 1.56279 1.81679 2.11008 2.47130 2.83102 3.21366 3.33074 3.54843 3.60506 3.67735 3.72625 3.81614 3.87018 3.88151 4.01219 4.11838 4.12007 4.20272 4.23531 4.37494 4.42806 4.47161 4.53366 4.60038 4.71106 4.82132 4.83089 4.86049 4.90147 4.92958 4.94672 5.05942 5.11878 5.13985 5.24782 5.25435 5.36187 5.40662 5.41527 5.46857 5.53657 5.54002 5.69503 5.75286 5.98970 6.14927 6.48315 6.86588 7.05594 7.15595 7.72353 8.35857 9.22700 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015993 B = 0.002400 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.345402 B =11662.196821 C =13068.272620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.242 4.242 8 H 0.088 0.912 9 N -0.625 5.625 10 C 0.161 3.839 11 C 0.097 3.903 12 H 0.075 0.925 13 O -0.569 6.569 14 C -0.090 4.090 15 H 0.085 0.915 16 C 0.149 3.851 17 N -0.713 5.713 18 C 0.554 3.446 19 O -0.565 6.565 20 C -0.156 4.156 21 C -0.091 4.091 22 C -0.134 4.134 23 C -0.088 4.088 24 C -0.131 4.131 25 C -0.028 4.028 26 C -0.094 4.094 27 C -0.132 4.132 28 C -0.134 4.134 29 C -0.123 4.123 30 C 0.140 3.860 31 H 0.247 0.753 32 H 0.020 0.980 33 H 0.013 0.987 34 H 0.393 0.607 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.410 0.590 38 H 0.136 0.864 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.050 0.950 48 H 0.089 0.911 49 H 0.057 0.943 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.802 -24.031 4.528 26.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.371 4.371 8 H 0.106 0.894 9 N -0.352 5.352 10 C 0.035 3.965 11 C 0.037 3.963 12 H 0.093 0.907 13 O -0.377 6.377 14 C -0.110 4.110 15 H 0.103 0.897 16 C 0.025 3.975 17 N -0.364 5.364 18 C 0.343 3.657 19 O -0.446 6.446 20 C -0.160 4.160 21 C -0.109 4.109 22 C -0.152 4.152 23 C -0.105 4.105 24 C -0.149 4.149 25 C -0.029 4.029 26 C -0.112 4.112 27 C -0.169 4.169 28 C -0.172 4.172 29 C -0.161 4.161 30 C 0.015 3.985 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.032 0.968 34 H 0.243 0.757 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.247 0.753 38 H 0.154 0.846 39 H 0.169 0.831 40 H 0.175 0.825 41 H 0.167 0.833 42 H 0.110 0.890 43 H 0.119 0.881 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.069 0.931 48 H 0.107 0.893 49 H 0.076 0.924 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 10.696 -24.587 4.379 27.168 hybrid contribution -0.440 2.216 -0.376 2.291 sum 10.256 -22.370 4.003 24.932 Atomic orbital electron populations 1.70166 1.06365 1.25334 1.58262 1.25689 0.96656 1.01186 1.02547 0.85055 0.77734 0.78965 0.77444 1.21342 1.22276 1.19056 1.19493 0.91166 0.83406 1.42993 0.89405 1.44611 1.02067 1.01292 1.87210 1.21595 0.84734 0.91688 0.98463 1.22886 0.86223 0.94286 0.92952 0.90741 1.86392 1.19536 1.79936 1.51800 1.22405 0.94460 0.92995 1.01098 0.89662 1.21097 0.86090 0.91953 0.98387 1.45885 1.24313 1.13645 1.52565 1.18673 0.85786 0.81265 0.80000 1.90693 1.56063 1.58509 1.39356 1.19818 0.94655 0.94887 1.06590 1.21547 0.93162 0.99821 0.96411 1.21445 0.97615 0.96487 0.99669 1.21734 0.99328 0.93205 0.96276 1.21262 0.92135 1.01458 1.00015 1.19989 0.95916 0.91872 0.95080 1.21870 0.97441 0.93684 0.98246 1.23113 1.02808 0.94462 0.96501 1.22769 1.00590 0.97957 0.95837 1.22859 1.01027 0.95752 0.96454 1.21755 0.95109 0.83823 0.97775 0.94393 0.96225 0.96843 0.75732 0.91589 0.91348 0.75296 0.84576 0.83058 0.82535 0.83269 0.89041 0.88057 0.91639 0.90697 0.89577 0.93077 0.89292 0.92430 0.95263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.79 10.31 21.65 0.22 -56.57 16 2 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 3 Si 0.98 45.11 29.55 68.60 2.03 47.13 16 4 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.24 -13.24 10.28 84.03 0.86 -12.38 16 8 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 9 N -0.62 -31.33 3.39 -692.00 -2.35 -33.68 16 10 C 0.16 7.83 5.15 86.73 0.45 8.28 16 11 C 0.10 3.57 3.80 31.78 0.12 3.69 16 12 H 0.07 2.52 8.04 -2.39 -0.02 2.50 16 13 O -0.57 -19.40 13.39 -148.98 -1.99 -21.39 16 14 C -0.09 -3.02 2.83 -9.41 -0.03 -3.04 16 15 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 16 C 0.15 4.36 5.12 86.38 0.44 4.80 16 17 N -0.71 -18.69 5.32 -465.98 -2.48 -21.17 16 18 C 0.55 15.83 7.33 86.79 0.64 16.46 16 19 O -0.57 -19.48 13.85 -3.89 -0.05 -19.54 16 20 C -0.16 -3.72 5.85 -20.09 -0.12 -3.83 16 21 C -0.09 -1.71 9.37 22.53 0.21 -1.50 16 22 C -0.13 -1.93 10.03 22.23 0.22 -1.71 16 23 C -0.09 -1.10 10.04 22.33 0.22 -0.88 16 24 C -0.13 -2.00 8.94 22.23 0.20 -1.80 16 25 C -0.03 -0.59 5.30 -19.61 -0.10 -0.69 16 26 C -0.09 -2.08 3.13 -11.01 -0.03 -2.12 16 27 C -0.13 -2.10 7.44 31.12 0.23 -1.87 16 28 C -0.13 -2.08 8.08 31.12 0.25 -1.83 16 29 C -0.12 -2.41 7.57 31.12 0.24 -2.17 16 30 C 0.14 5.37 6.41 86.85 0.56 5.93 16 31 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 32 H 0.02 1.09 7.30 -2.39 -0.02 1.07 16 33 H 0.01 0.73 7.50 -2.39 -0.02 0.71 16 34 H 0.39 10.36 9.12 -74.06 -0.68 9.69 16 35 H 0.07 2.01 8.10 -2.38 -0.02 1.99 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.41 9.21 7.02 -92.71 -0.65 8.55 16 38 H 0.14 2.25 7.12 -2.91 -0.02 2.23 16 39 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 40 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 41 H 0.15 1.55 6.28 -2.91 -0.02 1.53 16 42 H 0.09 2.64 5.48 -2.39 -0.01 2.63 16 43 H 0.10 1.19 6.02 -2.39 -0.01 1.18 16 44 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.09 1.49 7.93 -2.39 -0.02 1.47 16 49 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 Total: -1.00 -72.73 396.46 -0.16 -72.90 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: -0.36 Total: 30.33 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 4.82 Total: 1.99 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -4.61 Total: -111.42 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -2.05 Total: -40.93 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -72.73 -0.16 -72.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958636035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.986 kcal (2) G-P(sol) polarization free energy of solvation -72.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds