Wall clock time and date at job start Wed Apr 1 2020 02:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99798 * 2 1 4 4 H 1.48495 * 109.47110 * 270.00014 * 3 2 1 5 5 H 1.48503 * 109.47141 * 29.99801 * 3 2 1 6 6 H 1.48507 * 109.46930 * 149.99942 * 3 2 1 7 7 C 1.38810 * 120.00503 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00115 * 193.99818 * 7 2 1 9 9 N 1.36935 * 119.99479 * 13.99789 * 7 2 1 10 10 C 1.43471 * 118.93563 * 205.04638 * 9 7 2 11 11 C 1.53795 * 107.95897 * 273.63199 * 10 9 7 12 12 C 1.47607 * 111.84398 * 281.53968 * 11 10 9 13 13 N 1.48216 * 110.03723 * 58.44080 * 12 11 10 14 14 C 1.34777 * 119.97284 * 102.54248 * 13 12 11 15 15 O 1.21285 * 119.99794 * 359.73292 * 14 13 12 16 16 C 1.50700 * 119.99982 * 179.44927 * 14 13 12 17 17 C 1.53005 * 109.46833 * 174.65884 * 16 14 13 18 18 H 1.09000 * 109.43845 * 53.78231 * 17 16 14 19 19 C 1.53070 * 109.43368 * 293.86606 * 17 16 14 20 20 C 1.53417 * 108.29104 * 191.75045 * 19 17 16 21 21 O 1.42824 * 108.37220 * 64.74554 * 20 19 17 22 22 C 1.35850 * 117.86026 * 310.85456 * 21 20 19 23 23 C 1.39152 * 118.49558 * 197.02069 * 22 21 20 24 24 C 1.37968 * 120.21430 * 180.17943 * 23 22 21 25 25 C 1.38293 * 119.95811 * 0.02562 * 24 23 22 26 26 C 1.38105 * 119.98287 * 359.92331 * 25 24 23 27 27 C 1.38308 * 121.79595 * 17.10969 * 22 21 20 28 28 C 1.43619 * 120.05850 * 282.27348 * 13 12 11 29 29 C 1.48856 * 118.94327 * 25.07086 * 9 7 2 30 30 H 0.97003 * 120.00362 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.76542 * 33.25031 * 10 9 7 32 32 H 1.09005 * 109.76092 * 153.96808 * 10 9 7 33 33 H 1.08999 * 109.00685 * 42.27790 * 11 10 9 34 34 H 1.09002 * 109.00374 * 161.06255 * 11 10 9 35 35 H 1.08997 * 109.45431 * 298.28419 * 12 11 10 36 36 H 1.09000 * 109.50676 * 178.63025 * 12 11 10 37 37 H 1.09005 * 109.46982 * 294.65539 * 16 14 13 38 38 H 1.08990 * 109.47368 * 54.65900 * 16 14 13 39 39 H 1.09005 * 109.70191 * 311.44352 * 19 17 16 40 40 H 1.08998 * 109.70453 * 72.00633 * 19 17 16 41 41 H 1.08998 * 109.68039 * 184.46959 * 20 19 17 42 42 H 1.09000 * 109.67975 * 305.02616 * 20 19 17 43 43 H 1.07996 * 119.89151 * 0.16239 * 23 22 21 44 44 H 1.07994 * 120.02182 * 180.02562 * 24 23 22 45 45 H 1.07995 * 120.00942 * 179.90232 * 25 24 23 46 46 H 1.07998 * 119.83953 * 180.02562 * 26 25 24 47 47 H 1.09004 * 108.87392 * 211.69725 * 28 13 12 48 48 H 1.08999 * 108.87885 * 330.13333 * 28 13 12 49 49 H 1.08999 * 109.48108 * 20.63681 * 29 9 7 50 50 H 1.09003 * 109.47869 * 260.60348 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0662 -1.2158 0.2268 9 7 1.3561 -2.3705 -0.2858 10 6 1.8836 -3.6040 0.2227 11 6 2.9319 -4.1196 -0.7777 12 6 2.3040 -4.7641 -1.9478 13 7 1.4053 -3.8059 -2.6340 14 6 1.8052 -3.2040 -3.7716 15 8 2.9020 -3.4429 -4.2308 16 6 0.8870 -2.2391 -4.4765 17 6 1.6250 -1.6016 -5.6555 18 1 2.0335 -2.3848 -6.2940 19 6 2.7656 -0.7268 -5.1293 20 6 3.2954 0.1237 -6.2911 21 8 2.2582 1.0129 -6.7076 22 6 1.0253 0.4889 -6.9330 23 6 0.1106 1.2364 -7.6685 24 6 -1.1528 0.7401 -7.9154 25 6 -1.5129 -0.5040 -7.4305 26 6 -0.6073 -1.2491 -6.7011 27 6 0.6634 -0.7560 -6.4513 28 6 0.1063 -3.5226 -2.0908 29 6 0.1209 -2.3200 -1.1150 30 1 -0.4851 0.8400 -0.0004 31 1 2.3520 -3.4329 1.1920 32 1 1.0805 -4.3339 0.3251 33 1 3.5417 -3.2819 -1.1161 34 1 3.5736 -4.8447 -0.2771 35 1 1.7268 -5.6286 -1.6198 36 1 3.0781 -5.0926 -2.6413 37 1 0.0103 -2.7734 -4.8427 38 1 0.5738 -1.4611 -3.7804 39 1 2.3945 -0.0763 -4.3373 40 1 3.5646 -1.3587 -4.7415 41 1 4.1609 0.6980 -5.9607 42 1 3.5789 -0.5240 -7.1207 43 1 0.3905 2.2084 -8.0470 44 1 -1.8600 1.3226 -8.4869 45 1 -2.5021 -0.8927 -7.6219 46 1 -0.8908 -2.2205 -6.3239 47 1 -0.5784 -3.3036 -2.9102 48 1 -0.2535 -4.4036 -1.5592 49 1 0.1026 -1.3903 -1.6837 50 1 -0.7542 -2.3671 -0.4668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981744895.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:59 Heat of formation + Delta-G solvation = -21.562938 kcal Electronic energy + Delta-G solvation = -32208.712873 eV Core-core repulsion = 28201.668443 eV Total energy + Delta-G solvation = -4007.044430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.82894 -39.63888 -37.40865 -37.11696 -35.00547 -34.21218 -32.76709 -30.90435 -30.59395 -30.18660 -28.97866 -27.50388 -25.55120 -24.28477 -23.69169 -23.53557 -22.42203 -21.32969 -19.79566 -19.67651 -18.37571 -17.85420 -17.12895 -16.55587 -16.22175 -16.01150 -15.67948 -15.25275 -14.82720 -14.68850 -14.20079 -14.04253 -13.92917 -13.68947 -13.46332 -13.21023 -13.12053 -12.89011 -12.76835 -12.47449 -12.38972 -12.15215 -11.89280 -11.72979 -11.40707 -11.38025 -11.13445 -10.99043 -10.79582 -10.74523 -10.60154 -10.52446 -10.27711 -10.19348 -10.16385 -9.85781 -9.71956 -9.28830 -8.73399 -8.49728 -8.08545 -8.03602 -6.72551 -5.81637 -3.23695 1.35029 1.48377 3.08789 3.36324 3.39016 3.43964 3.44700 3.53214 3.81001 4.48210 4.62861 4.70574 4.85362 4.93387 5.05934 5.15953 5.26689 5.28599 5.32021 5.38978 5.41231 5.45420 5.52728 5.55595 5.58514 5.65376 5.78312 5.84778 5.90586 5.91183 6.03477 6.05853 6.08736 6.12649 6.27124 6.29400 6.36147 6.42940 6.43368 6.52124 6.52886 6.58368 6.79939 6.83750 6.91208 7.03066 7.35542 7.47782 7.53645 7.78032 7.97746 8.41486 8.66689 9.18634 9.86011 10.31045 11.26173 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009976 B = 0.004548 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.028798 B = 6155.715268 C = 7216.666757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.006 3.994 3 Si 0.896 3.104 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.163 3.837 11 C -0.169 4.169 12 C 0.129 3.871 13 N -0.584 5.584 14 C 0.523 3.477 15 O -0.559 6.559 16 C -0.132 4.132 17 C -0.025 4.025 18 H 0.089 0.911 19 C -0.158 4.158 20 C 0.064 3.936 21 O -0.319 6.319 22 C 0.138 3.862 23 C -0.153 4.153 24 C -0.091 4.091 25 C -0.155 4.155 26 C -0.084 4.084 27 C -0.149 4.149 28 C 0.078 3.922 29 C 0.164 3.836 30 H 0.253 0.747 31 H 0.045 0.955 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.065 0.935 48 H 0.060 0.940 49 H 0.077 0.923 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.825 -5.121 -12.949 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.192 4.192 3 Si 0.726 3.274 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.034 3.966 11 C -0.210 4.210 12 C 0.008 3.992 13 N -0.315 5.315 14 C 0.312 3.688 15 O -0.439 6.439 16 C -0.172 4.172 17 C -0.043 4.043 18 H 0.107 0.893 19 C -0.195 4.195 20 C -0.011 4.011 21 O -0.233 6.233 22 C 0.092 3.908 23 C -0.172 4.172 24 C -0.109 4.109 25 C -0.173 4.173 26 C -0.102 4.102 27 C -0.150 4.150 28 C -0.047 4.047 29 C 0.039 3.961 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.081 0.919 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.096 0.904 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.320 -4.932 -13.158 14.114 hybrid contribution 0.331 0.792 0.312 0.913 sum -0.989 -4.141 -12.847 13.534 Atomic orbital electron populations 1.69988 1.05052 1.25397 1.54897 1.24935 0.95293 0.98070 1.00927 0.86384 0.79183 0.83994 0.77847 1.21356 1.21722 1.20518 1.19168 0.91909 0.84746 1.42282 0.91834 1.43629 1.28408 1.02078 1.57054 1.20278 0.93691 0.88422 0.94181 1.21953 1.00700 1.00577 0.97745 1.20635 0.93523 0.90437 0.94625 1.47377 1.17261 1.43230 1.23591 1.20401 0.87370 0.80474 0.80556 1.90586 1.22361 1.64045 1.66901 1.21813 0.98411 0.99182 0.97781 1.19724 0.93434 0.96271 0.94895 0.89260 1.22370 0.99811 0.99226 0.98114 1.23004 0.88655 0.92646 0.96767 1.85965 1.16850 1.37562 1.82930 1.18703 0.85492 0.92052 0.94528 1.20571 0.93730 1.01158 1.01709 1.20873 0.95216 0.95776 0.99078 1.20984 0.99773 0.95535 1.01015 1.20964 0.92284 0.99671 0.97237 1.19879 0.96740 0.95710 1.02683 1.22224 0.83278 1.00983 0.98262 1.21925 0.88744 0.94542 0.90932 0.93653 0.93665 0.94899 0.91360 0.92831 0.92264 0.90551 0.89080 0.87882 0.90260 0.88127 0.87602 0.91943 0.85521 0.85722 0.86041 0.85764 0.91686 0.92132 0.90432 0.94074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.18 10.86 55.49 0.60 -24.58 16 2 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 3 Si 0.90 21.77 29.58 -169.99 -5.03 16.74 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.65 9.28 -15.06 -0.14 -6.79 16 8 H 0.06 1.71 7.87 -52.49 -0.41 1.30 16 9 N -0.59 -13.77 2.54 -171.99 -0.44 -14.20 16 10 C 0.16 3.21 5.63 -5.23 -0.03 3.18 16 11 C -0.17 -2.97 5.65 -28.92 -0.16 -3.14 16 12 C 0.13 2.09 5.74 -5.70 -0.03 2.06 16 13 N -0.58 -10.06 2.45 -176.40 -0.43 -10.49 16 14 C 0.52 9.30 7.36 -10.99 -0.08 9.22 16 15 O -0.56 -11.04 13.73 5.55 0.08 -10.97 16 16 C -0.13 -2.05 3.33 -27.88 -0.09 -2.14 16 17 C -0.02 -0.37 2.02 -91.70 -0.18 -0.56 16 18 H 0.09 1.34 7.83 -51.93 -0.41 0.93 16 19 C -0.16 -2.52 5.09 -26.48 -0.13 -2.66 16 20 C 0.06 0.88 7.03 37.37 0.26 1.14 16 21 O -0.32 -4.97 10.27 -19.27 -0.20 -5.17 16 22 C 0.14 2.08 6.47 -39.22 -0.25 1.82 16 23 C -0.15 -2.02 9.94 -39.34 -0.39 -2.41 16 24 C -0.09 -1.04 10.04 -39.66 -0.40 -1.44 16 25 C -0.15 -1.77 10.04 -39.61 -0.40 -2.17 16 26 C -0.08 -1.06 9.08 -39.51 -0.36 -1.42 16 27 C -0.15 -2.17 5.43 -104.44 -0.57 -2.74 16 28 C 0.08 1.30 4.97 -4.58 -0.02 1.28 16 29 C 0.16 3.55 5.12 -1.75 -0.01 3.54 16 30 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 32 H 0.03 0.60 7.59 -51.93 -0.39 0.20 16 33 H 0.07 1.43 7.91 -51.93 -0.41 1.02 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.82 8.05 -51.93 -0.42 0.41 16 36 H 0.08 1.26 7.13 -51.93 -0.37 0.89 16 37 H 0.09 1.17 5.74 -51.93 -0.30 0.87 16 38 H 0.10 1.82 6.92 -51.93 -0.36 1.46 16 39 H 0.08 1.46 8.06 -51.93 -0.42 1.04 16 40 H 0.10 1.72 6.57 -51.93 -0.34 1.38 16 41 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 46 H 0.12 1.35 6.37 -52.49 -0.33 1.02 16 47 H 0.06 0.94 6.52 -51.93 -0.34 0.60 16 48 H 0.06 0.92 7.73 -51.93 -0.40 0.51 16 49 H 0.08 1.88 5.58 -51.93 -0.29 1.60 16 50 H 0.04 0.96 8.00 -51.93 -0.42 0.54 16 LS Contribution 380.71 15.07 5.74 5.74 Total: -1.00 -30.49 380.71 -10.46 -40.94 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.70 Total: 5.11 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -3.08 Total: -3.13 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.27 Total: -49.27 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.12 Total: -16.13 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.49 -10.46 -40.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981744895.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.380 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds