Wall clock time and date at job start Wed Apr 1 2020 03:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00550 * 2 1 4 4 H 1.48501 * 109.47010 * 275.46764 * 3 2 1 5 5 H 1.48504 * 109.46743 * 35.46394 * 3 2 1 6 6 H 1.48494 * 109.47435 * 155.46650 * 3 2 1 7 7 C 1.38815 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00009 * 341.21809 * 7 2 1 9 9 N 1.36934 * 120.00169 * 161.22328 * 7 2 1 10 10 C 1.43470 * 118.94189 * 324.56208 * 9 7 2 11 11 C 1.53799 * 107.96306 * 273.65618 * 10 9 7 12 12 C 1.47144 * 111.83823 * 281.66643 * 11 10 9 13 13 N 1.48216 * 110.20004 * 58.38322 * 12 11 10 14 14 C 1.34777 * 119.97161 * 102.37905 * 13 12 11 15 15 O 1.21283 * 119.99914 * 174.38840 * 14 13 12 16 16 C 1.50694 * 119.99936 * 354.39074 * 14 13 12 17 17 C 1.50697 * 109.82591 * 79.79079 * 16 14 13 18 18 C 1.38238 * 119.99811 * 47.37991 * 17 16 14 19 19 C 1.38238 * 120.00208 * 179.76551 * 18 17 16 20 20 C 1.38230 * 119.99682 * 0.50799 * 19 18 17 21 21 C 1.38237 * 120.00155 * 359.74408 * 20 19 18 22 22 C 1.38230 * 120.00617 * 227.65223 * 17 16 14 23 23 C 1.54378 * 109.83379 * 200.67897 * 16 14 13 24 24 C 1.55312 * 102.25397 * 98.15413 * 23 16 14 25 25 C 1.54940 * 100.93911 * 34.13648 * 24 23 16 26 26 O 1.43239 * 109.83083 * 318.81208 * 16 14 13 27 27 C 1.43739 * 119.98254 * 282.18013 * 13 12 11 28 28 C 1.48861 * 118.94313 * 144.58268 * 9 7 2 29 29 H 0.97011 * 119.99866 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.76503 * 154.03272 * 10 9 7 31 31 H 1.09000 * 109.80446 * 33.28995 * 10 9 7 32 32 H 1.08989 * 109.00764 * 161.05850 * 11 10 9 33 33 H 1.08999 * 108.94255 * 42.22839 * 11 10 9 34 34 H 1.08991 * 109.32540 * 178.56119 * 12 11 10 35 35 H 1.08999 * 109.32152 * 298.20444 * 12 11 10 36 36 H 1.08006 * 119.99725 * 359.97438 * 18 17 16 37 37 H 1.08004 * 120.00090 * 180.22612 * 19 18 17 38 38 H 1.07998 * 119.99898 * 179.72270 * 20 19 18 39 39 H 1.08000 * 120.00131 * 179.97438 * 21 20 19 40 40 H 1.08006 * 119.99812 * 359.97438 * 22 17 16 41 41 H 1.08999 * 110.85342 * 216.34674 * 23 16 14 42 42 H 1.09000 * 110.84521 * 339.97032 * 23 16 14 43 43 H 1.08997 * 111.12533 * 152.05637 * 24 23 16 44 44 H 1.09000 * 111.12877 * 276.17462 * 24 23 16 45 45 H 1.09002 * 110.31077 * 82.47109 * 25 24 23 46 46 H 1.08999 * 110.31224 * 204.53708 * 25 24 23 47 47 H 1.09007 * 108.97550 * 330.20596 * 27 13 12 48 48 H 1.08994 * 108.85945 * 211.61925 * 27 13 12 49 49 H 1.08996 * 109.48008 * 260.58037 * 28 9 7 50 50 H 1.08998 * 109.47865 * 20.61769 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3823 2.1130 -1.3937 5 1 1.5102 2.6165 0.8124 6 1 3.6007 1.4094 0.5813 7 6 2.0101 -1.2022 -0.0005 8 1 1.5132 -2.1128 0.3002 9 7 3.3248 -1.2337 -0.3823 10 6 3.7649 -0.3571 -1.4293 11 6 3.5118 -1.0596 -2.7738 12 6 4.5377 -2.0740 -3.0631 13 7 4.5731 -3.0886 -1.9832 14 6 3.9990 -4.2933 -2.1720 15 8 4.1149 -5.1588 -1.3304 16 6 3.2133 -4.5647 -3.4289 17 6 4.1551 -4.8782 -4.5628 18 6 5.1835 -5.7831 -4.3770 19 6 6.0445 -6.0743 -5.4185 20 6 5.8835 -5.4528 -6.6427 21 6 4.8583 -4.5441 -6.8270 22 6 3.9941 -4.2568 -5.7870 23 6 2.2544 -5.7530 -3.2008 24 6 0.9108 -5.0378 -2.8921 25 6 1.0270 -3.7885 -3.8013 26 8 2.4153 -3.4221 -3.7595 27 6 5.2233 -2.7886 -0.7368 28 6 4.2513 -2.1767 0.3021 29 1 -0.4850 0.8402 -0.0004 30 1 4.8293 -0.1520 -1.3152 31 1 3.2035 0.5763 -1.3898 32 1 3.5146 -0.3149 -3.5695 33 1 2.5347 -1.5418 -2.7427 34 1 4.3053 -2.5624 -4.0093 35 1 5.5120 -1.5909 -3.1363 36 1 5.3122 -6.2651 -3.4191 37 1 6.8458 -6.7841 -5.2744 38 1 6.5589 -5.6770 -7.4551 39 1 4.7327 -4.0582 -7.7833 40 1 3.1930 -3.5468 -5.9310 41 1 2.1715 -6.3629 -4.1004 42 1 2.5776 -6.3546 -2.3513 43 1 0.0611 -5.6563 -3.1811 44 1 0.8484 -4.7553 -1.8413 45 1 0.7311 -4.0340 -4.8212 46 1 0.4087 -2.9792 -3.4131 47 1 6.0333 -2.0826 -0.9205 48 1 5.6431 -3.7078 -0.3283 49 1 4.8209 -1.6402 1.0608 50 1 3.6759 -2.9728 0.7746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989568143.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:10 Heat of formation + Delta-G solvation = -0.309741 kcal Electronic energy + Delta-G solvation = -33441.017111 eV Core-core repulsion = 29434.894289 eV Total energy + Delta-G solvation = -4006.122822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.07210 -38.91573 -38.19835 -37.11845 -34.48300 -32.49391 -32.14051 -31.78508 -31.37183 -30.88938 -28.58187 -27.52447 -25.64118 -24.19658 -23.25852 -22.74343 -22.41061 -21.49232 -20.95021 -19.86993 -18.59649 -17.62627 -16.98112 -16.57022 -16.33550 -15.70374 -15.56826 -15.23554 -14.84550 -14.70175 -14.54978 -14.10101 -13.83006 -13.56658 -13.49046 -13.21361 -13.11077 -12.94576 -12.81498 -12.53868 -12.26884 -12.06244 -11.86967 -11.73419 -11.50469 -11.23111 -11.13030 -11.03863 -11.01922 -10.83008 -10.74351 -10.54963 -10.36628 -10.14206 -9.87898 -9.66953 -9.40582 -9.24783 -8.98305 -8.62716 -8.47110 -8.11133 -6.75460 -5.91163 -3.30927 1.22066 1.33401 2.88668 3.32731 3.45058 3.49135 3.53024 3.61419 3.89167 4.53850 4.56024 4.64066 4.72762 4.90170 4.93974 5.06951 5.10380 5.16339 5.22706 5.36426 5.43216 5.46694 5.48942 5.54046 5.61396 5.71659 5.75060 5.85278 5.90118 5.93769 5.96371 5.98449 6.01580 6.12011 6.15219 6.24066 6.34612 6.39309 6.40574 6.43300 6.48812 6.55113 6.67726 6.72049 6.75157 6.90251 7.00463 7.14591 7.40286 7.81795 8.16148 8.40995 8.55839 9.09682 9.79824 10.15996 11.24974 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.004459 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.356940 B = 6277.624451 C = 6526.785203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.030 3.970 3 Si 0.890 3.110 4 H -0.288 1.288 5 H -0.307 1.307 6 H -0.275 1.275 7 C -0.256 4.256 8 H 0.075 0.925 9 N -0.603 5.603 10 C 0.152 3.848 11 C -0.165 4.165 12 C 0.129 3.871 13 N -0.569 5.569 14 C 0.530 3.470 15 O -0.548 6.548 16 C 0.136 3.864 17 C -0.086 4.086 18 C -0.108 4.108 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.096 4.096 23 C -0.132 4.132 24 C -0.152 4.152 25 C 0.048 3.952 26 O -0.343 6.343 27 C 0.098 3.902 28 C 0.132 3.868 29 H 0.261 0.739 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.132 0.868 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.057 0.943 46 H 0.098 0.902 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.032 0.968 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.514 -10.142 -13.787 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.169 4.169 3 Si 0.723 3.277 4 H -0.217 1.217 5 H -0.236 1.236 6 H -0.200 1.200 7 C -0.385 4.385 8 H 0.093 0.907 9 N -0.326 5.326 10 C 0.025 3.975 11 C -0.205 4.205 12 C 0.008 3.992 13 N -0.299 5.299 14 C 0.317 3.683 15 O -0.427 6.427 16 C 0.093 3.907 17 C -0.086 4.086 18 C -0.126 4.126 19 C -0.138 4.138 20 C -0.139 4.139 21 C -0.141 4.141 22 C -0.114 4.114 23 C -0.170 4.170 24 C -0.190 4.190 25 C -0.028 4.028 26 O -0.261 6.261 27 C -0.028 4.028 28 C 0.006 3.994 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.150 0.850 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.075 0.925 46 H 0.116 0.884 47 H 0.081 0.919 48 H 0.094 0.906 49 H 0.049 0.951 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.543 -10.274 -13.350 19.361 hybrid contribution 0.272 1.050 -0.014 1.085 sum 9.815 -9.224 -13.365 18.974 Atomic orbital electron populations 1.69819 1.05791 1.26343 1.53135 1.25355 0.95117 0.97511 0.98922 0.86746 0.80076 0.84546 0.76371 1.21701 1.23573 1.20028 1.18793 0.84499 0.93855 1.41341 0.90711 1.43874 1.07013 1.43888 1.37823 1.20647 0.96119 0.93068 0.87624 1.21786 1.02048 0.97909 0.98797 1.20831 0.98672 0.89960 0.89743 1.47264 1.54225 1.13338 1.15032 1.20219 0.78867 0.82125 0.87097 1.90631 1.61486 1.45325 1.45258 1.20835 0.91355 0.88108 0.90430 1.19851 0.96421 0.97721 0.94633 1.21043 0.94450 0.97546 0.99528 1.21074 0.99336 1.00215 0.93179 1.21159 0.98254 0.97227 0.97302 1.21147 0.95560 0.98439 0.98922 1.21050 0.99448 0.98961 0.91964 1.23084 0.93734 0.96528 1.03629 1.23245 0.97066 0.96595 1.02047 1.23464 0.82997 0.97975 0.98413 1.88626 1.17028 1.30120 1.90372 1.21690 0.95304 1.00327 0.85441 1.22066 0.91857 0.92952 0.92502 0.92948 0.94836 0.93858 0.93062 0.88475 0.89634 0.92819 0.85736 0.86073 0.86259 0.86010 0.84974 0.90246 0.88013 0.89934 0.89504 0.92458 0.88429 0.91868 0.90571 0.95055 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.54 13.97 55.49 0.78 -26.77 16 2 C 0.03 0.86 5.36 -17.43 -0.09 0.77 16 3 Si 0.89 22.66 24.73 -169.99 -4.20 18.46 16 4 H -0.29 -7.12 6.78 56.52 0.38 -6.74 16 5 H -0.31 -7.99 7.11 56.52 0.40 -7.59 16 6 H -0.27 -6.89 7.04 56.52 0.40 -6.49 16 7 C -0.26 -7.13 9.62 -15.06 -0.14 -7.28 16 8 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 9 N -0.60 -14.28 2.19 -171.99 -0.38 -14.66 16 10 C 0.15 3.30 4.49 -5.23 -0.02 3.28 16 11 C -0.16 -3.15 5.33 -29.13 -0.16 -3.30 16 12 C 0.13 2.13 4.99 -5.91 -0.03 2.10 16 13 N -0.57 -10.13 2.44 -176.57 -0.43 -10.56 16 14 C 0.53 9.60 5.79 -10.99 -0.06 9.54 16 15 O -0.55 -11.04 14.81 5.56 0.08 -10.96 16 16 C 0.14 2.07 0.61 -92.21 -0.06 2.01 16 17 C -0.09 -1.14 3.70 -104.63 -0.39 -1.53 16 18 C -0.11 -1.37 9.12 -39.58 -0.36 -1.73 16 19 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 20 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 21 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 22 C -0.10 -1.15 8.34 -39.59 -0.33 -1.48 16 23 C -0.13 -1.85 5.95 -24.78 -0.15 -1.99 16 24 C -0.15 -2.14 7.16 -24.48 -0.18 -2.31 16 25 C 0.05 0.68 7.78 38.18 0.30 0.98 16 26 O -0.34 -5.44 4.67 -35.23 -0.16 -5.60 16 27 C 0.10 1.71 5.31 -4.52 -0.02 1.69 16 28 C 0.13 2.73 6.85 -1.75 -0.01 2.72 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.03 0.66 7.59 -51.93 -0.39 0.26 16 31 H 0.04 1.04 2.41 -51.93 -0.12 0.92 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 2.14 6.01 -51.93 -0.31 1.83 16 34 H 0.09 1.32 3.85 -51.93 -0.20 1.12 16 35 H 0.05 0.80 8.05 -51.93 -0.42 0.38 16 36 H 0.12 1.69 7.52 -52.48 -0.39 1.29 16 37 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.13 1.56 7.10 -52.48 -0.37 1.18 16 41 H 0.08 0.96 7.84 -51.93 -0.41 0.55 16 42 H 0.10 1.56 6.71 -51.93 -0.35 1.21 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 47 H 0.06 0.98 7.73 -51.93 -0.40 0.58 16 48 H 0.08 1.30 7.30 -51.93 -0.38 0.92 16 49 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.06 1.35 7.97 -51.93 -0.41 0.93 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -32.07 373.74 -9.14 -41.21 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.55 Total: 4.70 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -2.90 Total: -1.45 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.03 Total: -51.99 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.08 Total: -16.56 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.20 Total: 18.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.07 -9.14 -41.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989568143.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.901 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds