Wall clock time and date at job start Wed Apr 1 2020 02:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 119.99644 * 2 1 4 4 H 1.48499 * 109.46900 * 269.99842 * 3 2 1 5 5 H 1.48500 * 109.46982 * 29.99595 * 3 2 1 6 6 H 1.48499 * 109.47320 * 149.99650 * 3 2 1 7 7 C 1.38807 * 120.00733 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99464 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00349 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00076 * 179.97438 * 9 7 2 11 11 C 1.53040 * 109.46179 * 154.99635 * 10 9 7 12 12 C 1.53192 * 109.31268 * 181.38681 * 11 10 9 13 13 N 1.46925 * 108.77491 * 305.36379 * 12 11 10 14 14 C 1.34773 * 120.63092 * 233.58473 * 13 12 11 15 15 O 1.21282 * 119.99926 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00133 * 180.02562 * 14 13 12 17 17 C 1.52996 * 109.47450 * 185.92093 * 16 14 13 18 18 H 1.08997 * 109.43507 * 305.94422 * 17 16 14 19 19 C 1.53078 * 109.39767 * 65.83118 * 17 16 14 20 20 C 1.53399 * 108.31267 * 168.24392 * 19 17 16 21 21 O 1.42841 * 108.38095 * 295.32958 * 20 19 17 22 22 C 1.35845 * 117.84373 * 49.27453 * 21 20 19 23 23 C 1.39151 * 118.50220 * 162.79052 * 22 21 20 24 24 C 1.37964 * 120.21363 * 179.55378 * 23 22 21 25 25 C 1.38291 * 119.95772 * 359.97438 * 24 23 22 26 26 C 1.38103 * 119.98456 * 0.08537 * 25 24 23 27 27 C 1.38368 * 121.80162 * 342.51003 * 22 21 20 28 28 C 1.46929 * 118.73849 * 53.86179 * 13 12 11 29 29 C 1.53038 * 109.46120 * 275.06873 * 10 9 7 30 30 H 0.96998 * 120.00089 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99888 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.46159 * 35.02425 * 10 9 7 33 33 H 1.08999 * 109.49533 * 61.43007 * 11 10 9 34 34 H 1.09000 * 109.52216 * 301.35260 * 11 10 9 35 35 H 1.09003 * 109.58488 * 185.57928 * 12 11 10 36 36 H 1.09001 * 109.70410 * 65.22639 * 12 11 10 37 37 H 1.09005 * 109.47284 * 65.92090 * 16 14 13 38 38 H 1.09003 * 109.47097 * 305.92217 * 16 14 13 39 39 H 1.08996 * 109.69887 * 287.95394 * 19 17 16 40 40 H 1.08998 * 109.68947 * 48.54659 * 19 17 16 41 41 H 1.09009 * 109.68277 * 55.05790 * 20 19 17 42 42 H 1.09000 * 109.68641 * 175.60988 * 20 19 17 43 43 H 1.08002 * 119.89213 * 359.53359 * 23 22 21 44 44 H 1.08002 * 120.01620 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.00411 * 180.10316 * 25 24 23 46 46 H 1.08002 * 119.84264 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.58332 * 65.92643 * 28 13 12 48 48 H 1.09002 * 109.58717 * 186.35104 * 28 13 12 49 49 H 1.09005 * 109.49518 * 298.56609 * 29 10 9 50 50 H 1.08996 * 109.50070 * 58.65516 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0014 9 7 3.3797 -1.2019 0.0011 10 6 4.1123 -2.4706 0.0022 11 6 5.5000 -2.2586 -0.6073 12 6 6.2501 -3.5941 -0.6362 13 7 6.2667 -4.1566 0.7210 14 6 7.4286 -4.5177 1.3005 15 8 8.4739 -4.3791 0.7012 16 6 7.4291 -5.0938 2.6930 17 6 8.8717 -5.2792 3.1678 18 1 9.4204 -5.8733 2.4371 19 6 9.5386 -3.9092 3.3146 20 6 10.8641 -4.0962 4.0638 21 8 10.5737 -4.5535 5.3856 22 6 9.7201 -5.6015 5.5211 23 6 9.7010 -6.2903 6.7301 24 6 8.8413 -7.3543 6.9094 25 6 7.9948 -7.7383 5.8855 26 6 8.0119 -7.0578 4.6839 27 6 8.8748 -5.9906 4.4971 28 6 4.9918 -4.3236 1.4321 29 6 4.2564 -2.9749 1.4399 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3618 0.0007 32 1 3.5654 -3.2064 -0.5873 33 1 6.0567 -1.5416 -0.0039 34 1 5.3973 -1.8770 -1.6231 35 1 7.2727 -3.4315 -0.9769 36 1 5.7453 -4.2846 -1.3119 37 1 6.9217 -6.0585 2.6874 38 1 6.9091 -4.4137 3.3677 39 1 9.7305 -3.4864 2.3285 40 1 8.8878 -3.2426 3.8804 41 1 11.4774 -4.8340 3.5464 42 1 11.3955 -3.1458 4.1127 43 1 10.3616 -5.9912 7.5304 44 1 8.8294 -7.8869 7.8489 45 1 7.3203 -8.5701 6.0256 46 1 7.3495 -7.3594 3.8859 47 1 4.3843 -5.0713 0.9222 48 1 5.1839 -4.6427 2.4566 49 1 4.8248 -2.2512 2.0241 50 1 3.2680 -3.1033 1.8812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996880963.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:42 Heat of formation + Delta-G solvation = -40.288111 kcal Electronic energy + Delta-G solvation = -30324.475362 eV Core-core repulsion = 26316.618948 eV Total energy + Delta-G solvation = -4007.856414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.20278 -40.04875 -37.74208 -37.66121 -35.38082 -34.67505 -32.20511 -31.21310 -30.91038 -30.49441 -29.96816 -29.03086 -25.38800 -24.44965 -23.86613 -23.07431 -22.63924 -21.90811 -20.46168 -20.00368 -18.92905 -18.20967 -17.64064 -17.27128 -16.71887 -16.26313 -15.81369 -15.60476 -15.10109 -14.88948 -14.55970 -14.28415 -14.23717 -14.08902 -13.76627 -13.66124 -13.49903 -13.30907 -13.09487 -12.93601 -12.75343 -12.51347 -12.21301 -12.02458 -11.93607 -11.80413 -11.55873 -11.17384 -11.10389 -11.04871 -10.95426 -10.94261 -10.62751 -10.55947 -10.29412 -9.94957 -9.76695 -9.64218 -9.06631 -8.98438 -8.60754 -8.40667 -7.34224 -5.82850 -3.18983 1.03032 1.16516 2.57033 2.96714 3.05803 3.33506 3.36701 3.41804 3.48870 4.18595 4.30609 4.42752 4.53986 4.54363 4.65118 4.83087 4.90470 4.91829 4.97798 5.01243 5.04719 5.10139 5.16983 5.19564 5.24442 5.29107 5.38163 5.43898 5.49203 5.53569 5.55774 5.58466 5.71885 5.78841 5.84793 5.87652 5.93217 6.02875 6.04201 6.10349 6.19894 6.22262 6.26536 6.32230 6.47745 6.51604 6.73721 6.87485 7.19916 7.40636 7.92312 8.12889 8.36201 9.14211 9.87062 10.06613 11.35281 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.002339 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.845766 B =11968.519298 C =12213.636718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.748 5.748 10 C 0.184 3.816 11 C -0.142 4.142 12 C 0.116 3.884 13 N -0.606 5.606 14 C 0.516 3.484 15 O -0.550 6.550 16 C -0.133 4.133 17 C -0.027 4.027 18 H 0.093 0.907 19 C -0.158 4.158 20 C 0.063 3.937 21 O -0.319 6.319 22 C 0.136 3.864 23 C -0.151 4.151 24 C -0.089 4.089 25 C -0.153 4.153 26 C -0.085 4.085 27 C -0.154 4.154 28 C 0.105 3.895 29 C -0.151 4.151 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.058 0.942 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.538 -15.481 10.114 27.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.074 3.926 11 C -0.181 4.181 12 C -0.006 4.006 13 N -0.339 5.339 14 C 0.304 3.696 15 O -0.428 6.428 16 C -0.173 4.173 17 C -0.046 4.046 18 H 0.112 0.888 19 C -0.195 4.195 20 C -0.012 4.012 21 O -0.233 6.233 22 C 0.090 3.910 23 C -0.170 4.170 24 C -0.107 4.107 25 C -0.171 4.171 26 C -0.103 4.103 27 C -0.155 4.155 28 C -0.018 4.018 29 C -0.192 4.192 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.126 0.874 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.143 0.857 47 H 0.089 0.911 48 H 0.097 0.903 49 H 0.077 0.923 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 20.908 -15.334 9.913 27.758 hybrid contribution 0.182 1.279 -0.101 1.296 sum 21.090 -14.055 9.813 27.177 Atomic orbital electron populations 1.69696 1.05106 1.25896 1.57337 1.24676 0.95222 0.97232 1.01922 0.86561 0.79185 0.85013 0.77803 1.21063 1.21745 1.20383 1.19053 0.80520 0.94680 1.43248 0.89172 1.42802 1.04030 1.01972 1.90212 1.20136 0.90208 0.89422 0.92843 1.22241 0.97201 0.96508 1.02178 1.21586 1.01931 0.94654 0.82475 1.48206 1.06730 1.62045 1.16927 1.20541 0.83240 0.77793 0.88021 1.90640 1.31095 1.55712 1.65385 1.21820 0.98030 1.03036 0.94400 1.19749 0.95473 0.96143 0.93219 0.88847 1.22377 0.96864 0.97196 1.03092 1.23002 0.96883 1.00366 0.80925 1.85987 1.60930 1.45841 1.30514 1.18711 0.90249 0.87882 0.94118 1.20608 1.02661 0.97091 0.96647 1.20932 0.94905 0.95882 0.98995 1.21035 1.00937 1.01364 0.93762 1.20969 0.97514 0.94254 0.97552 1.19826 0.99585 0.99824 0.96225 1.21993 0.84023 0.99149 0.96646 1.22717 1.00527 0.94678 1.01310 0.93011 0.80649 0.92504 0.92001 0.90487 0.89317 0.91428 0.88359 0.88524 0.88110 0.90745 0.91706 0.87445 0.85362 0.85519 0.85844 0.85663 0.91111 0.90271 0.92291 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.70 13.97 55.49 0.78 -27.92 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 21.75 27.74 -169.99 -4.71 17.04 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 7 C -0.25 -6.63 10.41 -15.06 -0.16 -6.79 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 N -0.75 -16.85 4.92 -53.39 -0.26 -17.12 16 10 C 0.18 3.23 2.73 -67.89 -0.19 3.04 16 11 C -0.14 -2.11 5.55 -26.61 -0.15 -2.26 16 12 C 0.12 1.50 6.43 -3.71 -0.02 1.48 16 13 N -0.61 -7.50 2.97 -172.50 -0.51 -8.01 16 14 C 0.52 6.37 7.38 -10.99 -0.08 6.29 16 15 O -0.55 -8.18 13.70 5.56 0.08 -8.10 16 16 C -0.13 -1.27 3.27 -27.89 -0.09 -1.36 16 17 C -0.03 -0.27 2.02 -91.70 -0.19 -0.46 16 18 H 0.09 0.99 7.83 -51.93 -0.41 0.59 16 19 C -0.16 -1.58 5.08 -26.48 -0.13 -1.72 16 20 C 0.06 0.57 7.03 37.36 0.26 0.83 16 21 O -0.32 -3.50 10.27 -19.25 -0.20 -3.70 16 22 C 0.14 1.46 6.47 -39.19 -0.25 1.20 16 23 C -0.15 -1.42 9.94 -39.34 -0.39 -1.81 16 24 C -0.09 -0.71 10.04 -39.66 -0.40 -1.11 16 25 C -0.15 -1.22 10.04 -39.61 -0.40 -1.62 16 26 C -0.08 -0.74 9.09 -39.53 -0.36 -1.10 16 27 C -0.15 -1.54 5.43 -104.44 -0.57 -2.10 16 28 C 0.11 1.21 6.37 -3.49 -0.02 1.19 16 29 C -0.15 -2.32 5.67 -26.39 -0.15 -2.47 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.36 8.14 5.66 -40.82 -0.23 7.91 16 32 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.18 7.01 -51.93 -0.36 0.82 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.76 6.23 -51.93 -0.32 0.44 16 38 H 0.10 0.90 7.34 -51.93 -0.38 0.52 16 39 H 0.10 1.12 6.56 -51.93 -0.34 0.78 16 40 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 41 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 42 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 44 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 45 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 46 H 0.13 0.88 6.36 -52.49 -0.33 0.54 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 0.74 5.88 -51.93 -0.31 0.44 16 49 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -32.52 387.44 -10.14 -42.66 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.77 Total: 8.01 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -3.38 Total: -8.70 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.00 Total: -53.05 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.12 Total: -11.80 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.52 -10.14 -42.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996880963.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.371 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds