Wall clock time and date at job start Wed Apr 1 2020 02:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 119.99644 * 2 1 4 4 H 1.48499 * 109.46900 * 269.99842 * 3 2 1 5 5 H 1.48500 * 109.46982 * 29.99595 * 3 2 1 6 6 H 1.48499 * 109.47320 * 149.99650 * 3 2 1 7 7 C 1.38807 * 120.00733 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99464 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00349 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00076 * 179.97438 * 9 7 2 11 11 C 1.53040 * 109.46179 * 154.99635 * 10 9 7 12 12 C 1.53192 * 109.31268 * 181.38681 * 11 10 9 13 13 N 1.46925 * 108.77491 * 305.36379 * 12 11 10 14 14 C 1.34773 * 120.63092 * 233.58473 * 13 12 11 15 15 O 1.21282 * 119.99926 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00133 * 180.02562 * 14 13 12 17 17 C 1.52996 * 109.47450 * 185.92093 * 16 14 13 18 18 H 1.08997 * 109.43507 * 305.94422 * 17 16 14 19 19 C 1.53078 * 109.39767 * 65.83118 * 17 16 14 20 20 C 1.53399 * 108.31267 * 168.24392 * 19 17 16 21 21 O 1.42841 * 108.38095 * 295.32958 * 20 19 17 22 22 C 1.35845 * 117.84373 * 49.27453 * 21 20 19 23 23 C 1.39151 * 118.50220 * 162.79052 * 22 21 20 24 24 C 1.37964 * 120.21363 * 179.55378 * 23 22 21 25 25 C 1.38291 * 119.95772 * 359.97438 * 24 23 22 26 26 C 1.38103 * 119.98456 * 0.08537 * 25 24 23 27 27 C 1.38368 * 121.80162 * 342.51003 * 22 21 20 28 28 C 1.46929 * 118.73849 * 53.86179 * 13 12 11 29 29 C 1.53038 * 109.46120 * 275.06873 * 10 9 7 30 30 H 0.96998 * 120.00089 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99888 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.46159 * 35.02425 * 10 9 7 33 33 H 1.08999 * 109.49533 * 61.43007 * 11 10 9 34 34 H 1.09000 * 109.52216 * 301.35260 * 11 10 9 35 35 H 1.09003 * 109.58488 * 185.57928 * 12 11 10 36 36 H 1.09001 * 109.70410 * 65.22639 * 12 11 10 37 37 H 1.09005 * 109.47284 * 65.92090 * 16 14 13 38 38 H 1.09003 * 109.47097 * 305.92217 * 16 14 13 39 39 H 1.08996 * 109.69887 * 287.95394 * 19 17 16 40 40 H 1.08998 * 109.68947 * 48.54659 * 19 17 16 41 41 H 1.09009 * 109.68277 * 55.05790 * 20 19 17 42 42 H 1.09000 * 109.68641 * 175.60988 * 20 19 17 43 43 H 1.08002 * 119.89213 * 359.53359 * 23 22 21 44 44 H 1.08002 * 120.01620 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.00411 * 180.10316 * 25 24 23 46 46 H 1.08002 * 119.84264 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.58332 * 65.92643 * 28 13 12 48 48 H 1.09002 * 109.58717 * 186.35104 * 28 13 12 49 49 H 1.09005 * 109.49518 * 298.56609 * 29 10 9 50 50 H 1.08996 * 109.50070 * 58.65516 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0014 9 7 3.3797 -1.2019 0.0011 10 6 4.1123 -2.4706 0.0022 11 6 5.5000 -2.2586 -0.6073 12 6 6.2501 -3.5941 -0.6362 13 7 6.2667 -4.1566 0.7210 14 6 7.4286 -4.5177 1.3005 15 8 8.4739 -4.3791 0.7012 16 6 7.4291 -5.0938 2.6930 17 6 8.8717 -5.2792 3.1678 18 1 9.4204 -5.8733 2.4371 19 6 9.5386 -3.9092 3.3146 20 6 10.8641 -4.0962 4.0638 21 8 10.5737 -4.5535 5.3856 22 6 9.7201 -5.6015 5.5211 23 6 9.7010 -6.2903 6.7301 24 6 8.8413 -7.3543 6.9094 25 6 7.9948 -7.7383 5.8855 26 6 8.0119 -7.0578 4.6839 27 6 8.8748 -5.9906 4.4971 28 6 4.9918 -4.3236 1.4321 29 6 4.2564 -2.9749 1.4399 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3618 0.0007 32 1 3.5654 -3.2064 -0.5873 33 1 6.0567 -1.5416 -0.0039 34 1 5.3973 -1.8770 -1.6231 35 1 7.2727 -3.4315 -0.9769 36 1 5.7453 -4.2846 -1.3119 37 1 6.9217 -6.0585 2.6874 38 1 6.9091 -4.4137 3.3677 39 1 9.7305 -3.4864 2.3285 40 1 8.8878 -3.2426 3.8804 41 1 11.4774 -4.8340 3.5464 42 1 11.3955 -3.1458 4.1127 43 1 10.3616 -5.9912 7.5304 44 1 8.8294 -7.8869 7.8489 45 1 7.3203 -8.5701 6.0256 46 1 7.3495 -7.3594 3.8859 47 1 4.3843 -5.0713 0.9222 48 1 5.1839 -4.6427 2.4566 49 1 4.8248 -2.2512 2.0241 50 1 3.2680 -3.1033 1.8812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996880963.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:41 Heat of formation + Delta-G solvation = -59.214033 kcal Electronic energy + Delta-G solvation = -30325.296052 eV Core-core repulsion = 26316.618948 eV Total energy + Delta-G solvation = -4008.677104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.96159 -41.01397 -38.88158 -38.40158 -36.35578 -36.05575 -33.95999 -32.40135 -31.64207 -31.47432 -31.15425 -29.94555 -26.69560 -25.40840 -24.65467 -24.30975 -23.78892 -22.94008 -21.69457 -20.83005 -20.11425 -19.39285 -18.91028 -18.22982 -17.46375 -17.15238 -16.72182 -16.70457 -16.41123 -15.91160 -15.82401 -15.34922 -15.15783 -15.05409 -14.91551 -14.80419 -14.58799 -14.30165 -14.13601 -14.05303 -13.85601 -13.56510 -13.39328 -13.23767 -12.94561 -12.79096 -12.65175 -12.46589 -12.30550 -12.14002 -12.13464 -11.96253 -11.91197 -11.78366 -11.65048 -11.34323 -11.26264 -10.97966 -10.72532 -9.72371 -9.65905 -9.30745 -9.09412 -8.01853 -5.34631 0.38450 0.50524 1.37456 1.39344 1.46587 1.61721 2.01188 2.37299 2.48003 2.83599 3.29272 3.37355 3.53286 3.59121 3.68572 3.81914 3.86917 3.95375 4.07067 4.16443 4.19180 4.27059 4.28098 4.30942 4.33923 4.40270 4.44523 4.53415 4.59416 4.62102 4.65472 4.78625 4.80590 4.81894 4.83033 4.86093 5.00928 5.05122 5.07999 5.11363 5.17522 5.28014 5.39938 5.47065 5.55629 5.61902 5.64053 5.78540 5.91229 6.22533 6.43215 6.49789 7.08406 7.16327 7.85370 8.03062 9.19504 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.002339 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.845766 B =11968.519298 C =12213.636718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.951 3.049 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.256 1.256 7 C -0.223 4.223 8 H 0.062 0.938 9 N -0.754 5.754 10 C 0.175 3.825 11 C -0.131 4.131 12 C 0.121 3.879 13 N -0.608 5.608 14 C 0.515 3.485 15 O -0.576 6.576 16 C -0.127 4.127 17 C -0.023 4.023 18 H 0.084 0.916 19 C -0.154 4.154 20 C 0.062 3.938 21 O -0.334 6.334 22 C 0.110 3.890 23 C -0.166 4.166 24 C -0.089 4.089 25 C -0.154 4.154 26 C -0.091 4.091 27 C -0.164 4.164 28 C 0.114 3.886 29 C -0.143 4.143 30 H 0.256 0.744 31 H 0.362 0.638 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.123 0.877 43 H 0.134 0.866 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.144 0.856 47 H 0.085 0.915 48 H 0.109 0.891 49 H 0.052 0.948 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.013 -16.876 11.033 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.779 3.221 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.181 1.181 7 C -0.354 4.354 8 H 0.080 0.920 9 N -0.396 5.396 10 C 0.067 3.933 11 C -0.170 4.170 12 C -0.002 4.002 13 N -0.340 5.340 14 C 0.305 3.695 15 O -0.457 6.457 16 C -0.166 4.166 17 C -0.041 4.041 18 H 0.102 0.898 19 C -0.192 4.192 20 C -0.013 4.013 21 O -0.248 6.248 22 C 0.065 3.935 23 C -0.184 4.184 24 C -0.107 4.107 25 C -0.172 4.172 26 C -0.108 4.108 27 C -0.165 4.165 28 C -0.009 4.009 29 C -0.184 4.184 30 H 0.065 0.935 31 H 0.195 0.805 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.141 0.859 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.141 0.859 43 H 0.152 0.848 44 H 0.169 0.831 45 H 0.165 0.835 46 H 0.162 0.838 47 H 0.103 0.897 48 H 0.127 0.873 49 H 0.071 0.929 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 22.439 -16.772 10.841 30.039 hybrid contribution -0.256 1.580 -0.376 1.644 sum 22.184 -15.192 10.464 28.852 Atomic orbital electron populations 1.69868 1.07006 1.26498 1.60068 1.25440 0.96020 1.00995 1.03121 0.85473 0.78526 0.80195 0.77917 1.20672 1.22576 1.18062 1.19026 0.82492 0.93403 1.40455 0.91996 1.42866 1.02527 1.03968 1.90253 1.20411 0.91090 0.87233 0.94529 1.22105 0.95358 0.97727 1.01813 1.21498 1.01549 0.93805 0.83315 1.48257 1.07103 1.61973 1.16713 1.20992 0.82586 0.77181 0.88736 1.90637 1.32014 1.56768 1.66255 1.21836 0.98171 1.04191 0.92413 1.19663 0.95550 0.95739 0.93168 0.89825 1.22296 0.97361 0.97267 1.02227 1.23104 0.96567 1.01221 0.80398 1.85960 1.61320 1.46294 1.31269 1.19023 0.90960 0.88429 0.95074 1.20857 1.03364 0.97656 0.96531 1.21278 0.94070 0.95261 1.00106 1.21389 1.00890 1.01644 0.93314 1.21239 0.97377 0.93745 0.98472 1.19876 1.00191 1.00549 0.95905 1.21986 0.83364 0.96916 0.98609 1.22516 1.00122 0.96841 0.98943 0.93472 0.80489 0.93204 0.92473 0.90381 0.89497 0.90097 0.85873 0.87860 0.89395 0.91463 0.91374 0.85928 0.84811 0.83106 0.83489 0.83847 0.89683 0.87316 0.92889 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.07 13.97 21.65 0.30 -61.77 16 2 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 3 Si 0.95 45.11 27.74 68.60 1.90 47.01 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.26 -11.05 6.52 99.48 0.65 -10.40 16 7 C -0.22 -12.17 10.41 84.03 0.87 -11.30 16 8 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 9 N -0.75 -33.44 4.92 -322.82 -1.59 -35.03 16 10 C 0.18 5.97 2.73 45.02 0.12 6.09 16 11 C -0.13 -3.68 5.55 30.67 0.17 -3.51 16 12 C 0.12 2.88 6.43 86.36 0.56 3.43 16 13 N -0.61 -13.51 2.97 -818.06 -2.43 -15.94 16 14 C 0.52 11.60 7.38 87.66 0.65 12.24 16 15 O -0.58 -16.38 13.70 -3.04 -0.04 -16.42 16 16 C -0.13 -2.08 3.27 29.85 0.10 -1.99 16 17 C -0.02 -0.42 2.02 -11.49 -0.02 -0.44 16 18 H 0.08 1.70 7.83 -2.39 -0.02 1.68 16 19 C -0.15 -3.00 5.08 30.75 0.16 -2.84 16 20 C 0.06 1.08 7.03 72.12 0.51 1.59 16 21 O -0.33 -7.22 10.27 -91.81 -0.94 -8.16 16 22 C 0.11 2.27 6.47 22.52 0.15 2.41 16 23 C -0.17 -2.90 9.94 22.42 0.22 -2.68 16 24 C -0.09 -1.21 10.04 22.22 0.22 -0.99 16 25 C -0.15 -1.99 10.04 22.25 0.22 -1.77 16 26 C -0.09 -1.32 9.09 22.30 0.20 -1.12 16 27 C -0.16 -3.02 5.43 -19.75 -0.11 -3.13 16 28 C 0.11 2.30 6.37 86.51 0.55 2.85 16 29 C -0.14 -4.18 5.67 30.82 0.17 -4.00 16 30 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 31 H 0.36 15.80 5.66 -92.71 -0.52 15.28 16 32 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.09 2.16 7.01 -2.39 -0.02 2.14 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.12 1.42 6.23 -2.38 -0.01 1.40 16 38 H 0.10 1.62 7.34 -2.39 -0.02 1.60 16 39 H 0.09 1.94 6.56 -2.39 -0.02 1.92 16 40 H 0.07 1.38 8.06 -2.39 -0.02 1.36 16 41 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 44 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 45 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 46 H 0.14 1.47 6.36 -2.91 -0.02 1.45 16 47 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.11 1.60 5.88 -2.39 -0.01 1.59 16 49 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 50 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -71.62 387.44 2.78 -68.84 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.36 Total: 29.84 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 5.21 Total: -8.38 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -3.71 Total: -112.74 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.98 Total: -24.58 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.90 Total: 47.01 kcal Total: -71.62 2.78 -68.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996880963.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.629 kcal (2) G-P(sol) polarization free energy of solvation -71.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds