Wall clock time and date at job start Wed Apr 1 2020 02:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 119.99771 * 2 1 4 4 H 1.48501 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47205 * 300.00136 * 3 2 1 6 6 H 1.48498 * 109.46994 * 60.00249 * 3 2 1 7 7 C 1.38818 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99833 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00187 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.46370 * 154.99630 * 10 9 7 12 12 C 1.53186 * 109.31424 * 181.38685 * 11 10 9 13 13 N 1.46931 * 108.77547 * 305.36982 * 12 11 10 14 14 C 1.34784 * 120.62757 * 233.58511 * 13 12 11 15 15 O 1.21274 * 119.99897 * 359.72693 * 14 13 12 16 16 C 1.50695 * 119.99635 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.47004 * 179.97438 * 16 14 13 18 18 H 1.09008 * 109.33480 * 54.67752 * 17 16 14 19 19 O 1.42720 * 109.33955 * 295.00348 * 17 16 14 20 20 C 1.43225 * 113.11645 * 187.98477 * 19 17 16 21 21 C 1.52969 * 108.47242 * 70.72270 * 20 19 17 22 22 C 1.50746 * 109.76801 * 310.84045 * 21 20 19 23 23 C 1.38599 * 118.76882 * 196.78287 * 22 21 20 24 24 C 1.38066 * 120.27894 * 180.19101 * 23 22 21 25 25 C 1.38258 * 119.86299 * 359.97438 * 24 23 22 26 26 C 1.38056 * 119.89592 * 359.92741 * 25 24 23 27 27 C 1.37909 * 121.35250 * 16.83544 * 22 21 20 28 28 C 1.46918 * 118.74146 * 53.86010 * 13 12 11 29 29 C 1.53042 * 109.46085 * 275.07136 * 10 9 7 30 30 H 0.97003 * 120.00460 * 359.97438 * 1 2 3 31 31 H 0.96997 * 119.99833 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.46066 * 35.02474 * 10 9 7 33 33 H 1.08998 * 109.49049 * 61.43408 * 11 10 9 34 34 H 1.08996 * 109.49700 * 301.34122 * 11 10 9 35 35 H 1.08994 * 109.58817 * 185.58198 * 12 11 10 36 36 H 1.09001 * 109.70649 * 65.22344 * 12 11 10 37 37 H 1.09005 * 109.47403 * 300.00056 * 16 14 13 38 38 H 1.09002 * 109.47422 * 60.00295 * 16 14 13 39 39 H 1.08997 * 109.63655 * 190.41954 * 20 19 17 40 40 H 1.09004 * 109.63157 * 310.82246 * 20 19 17 41 41 H 1.08998 * 109.42448 * 70.92633 * 21 20 19 42 42 H 1.08999 * 109.42319 * 190.81096 * 21 20 19 43 43 H 1.08001 * 119.86043 * 0.15758 * 23 22 21 44 44 H 1.07995 * 120.06861 * 179.97438 * 24 23 22 45 45 H 1.08006 * 120.05308 * 179.97438 * 25 24 23 46 46 H 1.08004 * 119.84529 * 180.02562 * 26 25 24 47 47 H 1.08995 * 109.59003 * 65.92626 * 28 13 12 48 48 H 1.08997 * 109.58851 * 186.35824 * 28 13 12 49 49 H 1.09001 * 109.49569 * 298.55966 * 29 10 9 50 50 H 1.09002 * 109.49913 * 58.65581 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.1806 -4.7528 0.6062 12 6 1.9621 -6.0700 0.6351 13 7 2.4417 -6.3652 -0.7220 14 6 2.1738 -7.5520 -1.3019 15 8 1.5355 -8.3901 -0.7011 16 6 2.6721 -7.8396 -2.6947 17 6 2.2349 -9.2449 -3.1128 18 1 1.1538 -9.3336 -3.0049 19 8 2.8741 -10.2076 -2.2752 20 6 2.6660 -11.5566 -2.7088 21 6 3.4600 -11.7795 -3.9972 22 6 3.1798 -10.6614 -4.9687 23 6 3.5071 -10.8398 -6.3036 24 6 3.2677 -9.8348 -7.2194 25 6 2.6985 -8.6455 -6.8033 26 6 2.3702 -8.4677 -5.4742 27 6 2.6098 -9.4762 -4.5535 28 6 3.2240 -5.3445 -1.4325 29 6 2.4235 -4.0333 -1.4404 30 1 -0.4851 0.8400 0.0004 31 1 0.3557 -2.3881 -0.0016 32 1 2.9686 -3.5510 0.5872 33 1 0.2816 -4.8763 0.0024 34 1 0.9015 -4.4730 1.6220 35 1 1.3101 -6.8744 0.9753 36 1 2.8123 -5.9782 1.3111 37 1 2.2564 -7.1080 -3.3877 38 1 3.7603 -7.7781 -2.7112 39 1 3.0142 -12.2463 -1.9400 40 1 1.6049 -11.7218 -2.8956 41 1 4.5252 -11.8013 -3.7674 42 1 3.1661 -12.7291 -4.4444 43 1 3.9519 -11.7688 -6.6286 44 1 3.5245 -9.9773 -8.2587 45 1 2.5102 -7.8570 -7.5171 46 1 1.9252 -7.5385 -5.1501 47 1 4.1750 -5.1922 -0.9222 48 1 3.4046 -5.6701 -2.4569 49 1 1.5128 -4.1637 -2.0250 50 1 3.0291 -3.2413 -1.8812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997195788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:02 Heat of formation + Delta-G solvation = -46.554143 kcal Electronic energy + Delta-G solvation = -30186.278530 eV Core-core repulsion = 26178.150401 eV Total energy + Delta-G solvation = -4008.128130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.84653 -39.77410 -37.82710 -37.18276 -34.45387 -34.04425 -32.55518 -32.01777 -30.98137 -30.12129 -29.32201 -28.48213 -25.21521 -24.34464 -24.02671 -22.97582 -22.67627 -21.80965 -20.35505 -20.13578 -18.74787 -17.69875 -17.06710 -16.99678 -16.46561 -16.21210 -15.70712 -15.43380 -15.01055 -14.84094 -14.63713 -14.28447 -13.94491 -13.76334 -13.70122 -13.52641 -13.41821 -13.32824 -13.14666 -12.69005 -12.51982 -12.50882 -12.18271 -11.95581 -11.92334 -11.58585 -11.53919 -11.19977 -10.97012 -10.87408 -10.86020 -10.82356 -10.47540 -10.21254 -9.83601 -9.82063 -9.69241 -9.58759 -9.07173 -8.93007 -8.89922 -8.42347 -6.99484 -5.79503 -3.08663 0.99770 1.05313 2.78161 3.11671 3.39693 3.40780 3.46422 3.48750 3.58390 4.25268 4.31670 4.47693 4.55855 4.58973 4.71123 4.80126 4.81052 4.95027 5.03211 5.07901 5.12730 5.19586 5.24677 5.32868 5.35730 5.37922 5.44598 5.50653 5.53823 5.57859 5.65504 5.67715 5.69336 5.74616 5.76877 5.96706 6.04048 6.12767 6.20518 6.24053 6.26045 6.37304 6.40836 6.51758 6.64999 6.66718 6.90366 6.97740 7.03611 7.58214 7.67203 8.33533 8.38767 9.50072 10.07874 10.42465 11.43110 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017114 B = 0.002263 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.702613 B =12367.913689 C =13555.679715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.179 3.821 11 C -0.138 4.138 12 C 0.117 3.883 13 N -0.608 5.608 14 C 0.517 3.483 15 O -0.537 6.537 16 C -0.132 4.132 17 C 0.149 3.851 18 H 0.080 0.920 19 O -0.356 6.356 20 C 0.060 3.940 21 C -0.116 4.116 22 C -0.071 4.071 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.110 4.110 27 C -0.113 4.113 28 C 0.106 3.894 29 C -0.150 4.150 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.059 0.941 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.626 -24.072 -12.059 27.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.177 4.177 12 C -0.006 4.006 13 N -0.342 5.342 14 C 0.305 3.695 15 O -0.414 6.414 16 C -0.172 4.172 17 C 0.091 3.909 18 H 0.097 0.903 19 O -0.274 6.274 20 C -0.017 4.017 21 C -0.154 4.154 22 C -0.071 4.071 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.128 4.128 27 C -0.114 4.114 28 C -0.017 4.017 29 C -0.192 4.192 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.086 0.914 48 H 0.094 0.906 49 H 0.078 0.922 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.517 -24.302 -11.539 27.933 hybrid contribution 0.093 1.092 -0.535 1.220 sum 7.610 -23.209 -12.074 27.247 Atomic orbital electron populations 1.69669 1.05126 1.25563 1.57680 1.24755 0.95501 0.97717 1.03027 0.86140 0.78779 0.84211 0.77193 1.20551 1.21901 1.21885 1.19276 0.90988 0.84083 1.42630 0.91118 1.42450 1.05818 0.99735 1.88481 1.20164 0.94462 0.86068 0.92454 1.22199 0.99177 0.94192 1.02163 1.21581 0.98656 0.97936 0.82382 1.48163 1.54116 1.14950 1.16995 1.20336 0.79836 0.81370 0.87944 1.90681 1.40367 1.45480 1.64921 1.21829 1.03982 0.95846 0.95541 1.20525 0.97169 0.88370 0.84886 0.90285 1.88167 1.74338 1.14435 1.50477 1.22575 0.99057 0.84468 0.95588 1.21171 1.02101 0.96769 0.95312 1.19513 0.98443 0.94818 0.94368 1.21064 1.00772 0.99423 0.92534 1.21131 0.99191 0.93741 0.99519 1.21136 0.99194 0.97693 0.95841 1.21132 0.99899 0.98625 0.93125 1.20248 1.00296 0.94472 0.96358 1.21955 0.94533 0.88815 0.96393 1.22751 0.99940 0.94719 1.01753 0.93545 0.78278 0.93435 0.91893 0.90631 0.89424 0.91730 0.87293 0.87943 0.88328 0.92657 0.89656 0.89820 0.86050 0.85990 0.85737 0.85512 0.91436 0.90598 0.92188 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.61 5.12 -53.38 -0.27 -17.89 16 10 C 0.18 3.37 2.73 -67.89 -0.19 3.18 16 11 C -0.14 -2.29 5.55 -26.61 -0.15 -2.43 16 12 C 0.12 1.71 6.43 -3.71 -0.02 1.69 16 13 N -0.61 -8.53 2.97 -172.51 -0.51 -9.05 16 14 C 0.52 7.48 7.58 -10.98 -0.08 7.39 16 15 O -0.54 -9.49 14.82 -9.09 -0.13 -9.62 16 16 C -0.13 -1.46 3.46 -27.88 -0.10 -1.56 16 17 C 0.15 1.72 2.28 -27.90 -0.06 1.65 16 18 H 0.08 0.99 7.94 -51.92 -0.41 0.57 16 19 O -0.36 -4.52 9.65 -49.88 -0.48 -5.00 16 20 C 0.06 0.55 6.85 37.14 0.25 0.81 16 21 C -0.12 -0.90 6.00 -27.88 -0.17 -1.07 16 22 C -0.07 -0.67 5.78 -104.59 -0.60 -1.27 16 23 C -0.12 -0.97 9.67 -39.51 -0.38 -1.36 16 24 C -0.12 -0.92 10.05 -39.64 -0.40 -1.32 16 25 C -0.12 -1.00 10.05 -39.64 -0.40 -1.39 16 26 C -0.11 -1.01 9.08 -39.50 -0.36 -1.37 16 27 C -0.11 -1.16 5.46 -104.62 -0.57 -1.73 16 28 C 0.11 1.34 6.37 -3.49 -0.02 1.32 16 29 C -0.15 -2.44 5.67 -26.38 -0.15 -2.59 16 30 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 32 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.09 1.33 7.01 -51.93 -0.36 0.97 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.11 1.00 5.86 -51.93 -0.30 0.69 16 38 H 0.10 1.05 7.93 -51.93 -0.41 0.63 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 45 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 46 H 0.13 1.00 6.45 -52.48 -0.34 0.66 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.08 0.77 5.93 -51.93 -0.31 0.46 16 49 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -33.08 393.58 -11.33 -44.41 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -7.92 Total: 8.45 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -3.64 Total: -7.10 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.06 Total: -54.05 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.62 Total: -14.62 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.08 -11.33 -44.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997195788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.145 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds