Wall clock time and date at job start Wed Apr 1 2020 02:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 119.99771 * 2 1 4 4 H 1.48501 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47205 * 300.00136 * 3 2 1 6 6 H 1.48498 * 109.46994 * 60.00249 * 3 2 1 7 7 C 1.38818 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99833 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00187 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.46370 * 154.99630 * 10 9 7 12 12 C 1.53186 * 109.31424 * 181.38685 * 11 10 9 13 13 N 1.46931 * 108.77547 * 305.36982 * 12 11 10 14 14 C 1.34784 * 120.62757 * 233.58511 * 13 12 11 15 15 O 1.21274 * 119.99897 * 359.72693 * 14 13 12 16 16 C 1.50695 * 119.99635 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.47004 * 179.97438 * 16 14 13 18 18 H 1.09008 * 109.33480 * 54.67752 * 17 16 14 19 19 O 1.42720 * 109.33955 * 295.00348 * 17 16 14 20 20 C 1.43225 * 113.11645 * 187.98477 * 19 17 16 21 21 C 1.52969 * 108.47242 * 70.72270 * 20 19 17 22 22 C 1.50746 * 109.76801 * 310.84045 * 21 20 19 23 23 C 1.38599 * 118.76882 * 196.78287 * 22 21 20 24 24 C 1.38066 * 120.27894 * 180.19101 * 23 22 21 25 25 C 1.38258 * 119.86299 * 359.97438 * 24 23 22 26 26 C 1.38056 * 119.89592 * 359.92741 * 25 24 23 27 27 C 1.37909 * 121.35250 * 16.83544 * 22 21 20 28 28 C 1.46918 * 118.74146 * 53.86010 * 13 12 11 29 29 C 1.53042 * 109.46085 * 275.07136 * 10 9 7 30 30 H 0.97003 * 120.00460 * 359.97438 * 1 2 3 31 31 H 0.96997 * 119.99833 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.46066 * 35.02474 * 10 9 7 33 33 H 1.08998 * 109.49049 * 61.43408 * 11 10 9 34 34 H 1.08996 * 109.49700 * 301.34122 * 11 10 9 35 35 H 1.08994 * 109.58817 * 185.58198 * 12 11 10 36 36 H 1.09001 * 109.70649 * 65.22344 * 12 11 10 37 37 H 1.09005 * 109.47403 * 300.00056 * 16 14 13 38 38 H 1.09002 * 109.47422 * 60.00295 * 16 14 13 39 39 H 1.08997 * 109.63655 * 190.41954 * 20 19 17 40 40 H 1.09004 * 109.63157 * 310.82246 * 20 19 17 41 41 H 1.08998 * 109.42448 * 70.92633 * 21 20 19 42 42 H 1.08999 * 109.42319 * 190.81096 * 21 20 19 43 43 H 1.08001 * 119.86043 * 0.15758 * 23 22 21 44 44 H 1.07995 * 120.06861 * 179.97438 * 24 23 22 45 45 H 1.08006 * 120.05308 * 179.97438 * 25 24 23 46 46 H 1.08004 * 119.84529 * 180.02562 * 26 25 24 47 47 H 1.08995 * 109.59003 * 65.92626 * 28 13 12 48 48 H 1.08997 * 109.58851 * 186.35824 * 28 13 12 49 49 H 1.09001 * 109.49569 * 298.55966 * 29 10 9 50 50 H 1.09002 * 109.49913 * 58.65581 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.1806 -4.7528 0.6062 12 6 1.9621 -6.0700 0.6351 13 7 2.4417 -6.3652 -0.7220 14 6 2.1738 -7.5520 -1.3019 15 8 1.5355 -8.3901 -0.7011 16 6 2.6721 -7.8396 -2.6947 17 6 2.2349 -9.2449 -3.1128 18 1 1.1538 -9.3336 -3.0049 19 8 2.8741 -10.2076 -2.2752 20 6 2.6660 -11.5566 -2.7088 21 6 3.4600 -11.7795 -3.9972 22 6 3.1798 -10.6614 -4.9687 23 6 3.5071 -10.8398 -6.3036 24 6 3.2677 -9.8348 -7.2194 25 6 2.6985 -8.6455 -6.8033 26 6 2.3702 -8.4677 -5.4742 27 6 2.6098 -9.4762 -4.5535 28 6 3.2240 -5.3445 -1.4325 29 6 2.4235 -4.0333 -1.4404 30 1 -0.4851 0.8400 0.0004 31 1 0.3557 -2.3881 -0.0016 32 1 2.9686 -3.5510 0.5872 33 1 0.2816 -4.8763 0.0024 34 1 0.9015 -4.4730 1.6220 35 1 1.3101 -6.8744 0.9753 36 1 2.8123 -5.9782 1.3111 37 1 2.2564 -7.1080 -3.3877 38 1 3.7603 -7.7781 -2.7112 39 1 3.0142 -12.2463 -1.9400 40 1 1.6049 -11.7218 -2.8956 41 1 4.5252 -11.8013 -3.7674 42 1 3.1661 -12.7291 -4.4444 43 1 3.9519 -11.7688 -6.6286 44 1 3.5245 -9.9773 -8.2587 45 1 2.5102 -7.8570 -7.5171 46 1 1.9252 -7.5385 -5.1501 47 1 4.1750 -5.1922 -0.9222 48 1 3.4046 -5.6701 -2.4569 49 1 1.5128 -4.1637 -2.0250 50 1 3.0291 -3.2413 -1.8812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997195788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:01 Heat of formation + Delta-G solvation = -65.227401 kcal Electronic energy + Delta-G solvation = -30187.088264 eV Core-core repulsion = 26178.150401 eV Total energy + Delta-G solvation = -4008.937863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.67588 -40.81464 -38.81875 -38.28241 -36.10834 -34.82241 -33.82475 -33.19095 -32.18260 -31.10232 -30.71550 -29.36834 -26.65542 -25.43357 -24.73800 -24.37692 -23.90018 -22.71340 -21.51539 -20.99127 -19.97295 -19.04961 -18.53409 -17.94074 -17.22910 -17.18630 -16.66732 -16.49918 -16.34409 -15.97209 -15.46840 -15.45007 -15.29794 -15.10615 -14.87698 -14.62000 -14.57134 -14.17596 -14.14455 -13.83807 -13.45666 -13.36117 -13.22341 -13.09083 -13.00186 -12.86133 -12.64473 -12.60090 -12.36606 -12.17632 -12.09607 -11.98722 -11.84793 -11.68636 -11.53802 -11.28928 -10.96179 -10.76169 -10.54433 -9.70778 -9.62834 -9.53973 -8.99505 -7.92297 -5.20889 0.35929 0.44399 1.48951 1.49489 1.59266 1.66446 2.02353 2.57651 2.72270 2.86193 3.38903 3.41866 3.65573 3.77145 3.81768 3.84109 3.91913 3.99607 4.09921 4.14304 4.18250 4.23309 4.28373 4.31601 4.38781 4.41997 4.43702 4.61069 4.61993 4.65720 4.68221 4.78472 4.83192 4.86068 4.87942 4.90166 4.98386 5.05315 5.08488 5.10013 5.17739 5.33083 5.51389 5.51974 5.56196 5.61044 5.62777 5.66068 6.07751 6.19601 6.29506 6.46068 7.20523 7.35490 8.11506 8.34358 9.31619 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017114 B = 0.002263 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.702613 B =12367.913689 C =13555.679715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.298 1.298 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.739 5.739 10 C 0.172 3.828 11 C -0.126 4.126 12 C 0.124 3.876 13 N -0.610 5.610 14 C 0.514 3.486 15 O -0.574 6.574 16 C -0.125 4.125 17 C 0.152 3.848 18 H 0.058 0.942 19 O -0.383 6.383 20 C 0.052 3.948 21 C -0.110 4.110 22 C -0.086 4.086 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.128 4.128 26 C -0.120 4.120 27 C -0.130 4.130 28 C 0.114 3.886 29 C -0.140 4.140 30 H 0.249 0.751 31 H 0.370 0.630 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.051 0.949 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.134 0.866 47 H 0.084 0.916 48 H 0.109 0.891 49 H 0.048 0.952 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.038 -25.160 -13.830 30.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.225 1.225 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.378 5.378 10 C 0.064 3.936 11 C -0.165 4.165 12 C 0.000 4.000 13 N -0.343 5.343 14 C 0.304 3.696 15 O -0.454 6.454 16 C -0.165 4.165 17 C 0.093 3.907 18 H 0.076 0.924 19 O -0.302 6.302 20 C -0.024 4.024 21 C -0.147 4.147 22 C -0.087 4.087 23 C -0.142 4.142 24 C -0.138 4.138 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.131 4.131 28 C -0.008 4.008 29 C -0.181 4.181 30 H 0.058 0.942 31 H 0.201 0.799 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.148 0.852 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.123 0.877 43 H 0.161 0.839 44 H 0.163 0.837 45 H 0.160 0.840 46 H 0.152 0.848 47 H 0.103 0.897 48 H 0.127 0.873 49 H 0.067 0.933 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.987 -25.427 -13.325 30.394 hybrid contribution -0.663 1.320 0.017 1.477 sum 9.324 -24.106 -13.307 29.071 Atomic orbital electron populations 1.69829 1.06705 1.25807 1.60043 1.25554 0.96305 1.01095 1.04219 0.85110 0.78437 0.80051 0.76410 1.18696 1.22304 1.22517 1.19667 0.91496 0.85012 1.40146 0.90231 1.42683 1.05388 1.01088 1.88634 1.20423 0.94200 0.84560 0.94391 1.22045 0.98559 0.94605 1.01341 1.21457 0.98872 0.96207 0.83424 1.48247 1.54043 1.15268 1.16723 1.20931 0.78995 0.80813 0.88901 1.90665 1.42017 1.46671 1.66052 1.21869 1.04769 0.96330 0.93499 1.20422 0.95950 0.88421 0.85887 0.92441 1.88113 1.74556 1.15899 1.51585 1.22777 0.99296 0.83360 0.96965 1.21156 1.01999 0.97336 0.94226 1.19785 0.98561 0.94941 0.95369 1.21348 1.00450 1.00442 0.91999 1.21481 0.98279 0.93346 1.00681 1.21418 0.98925 0.98519 0.95769 1.21294 1.00137 0.98799 0.93573 1.20201 1.01769 0.95519 0.95570 1.22005 0.93954 0.86380 0.98497 1.22524 0.99906 0.96598 0.99058 0.94224 0.79896 0.93357 0.93192 0.91194 0.90144 0.90133 0.85235 0.86446 0.87100 0.93090 0.89227 0.87662 0.83948 0.83738 0.84047 0.84792 0.89740 0.87305 0.93320 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.37 13.06 21.65 0.28 -59.09 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 45.43 29.55 68.60 2.03 47.45 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 7 C -0.23 -12.42 9.93 84.03 0.83 -11.58 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -36.25 5.12 -322.81 -1.65 -37.90 16 10 C 0.17 6.41 2.73 45.02 0.12 6.53 16 11 C -0.13 -4.19 5.55 30.67 0.17 -4.02 16 12 C 0.12 3.51 6.43 86.36 0.56 4.07 16 13 N -0.61 -16.16 2.97 -818.09 -2.43 -18.58 16 14 C 0.51 14.37 7.58 87.65 0.66 15.04 16 15 O -0.57 -20.43 14.82 10.99 0.16 -20.27 16 16 C -0.13 -2.58 3.46 29.85 0.10 -2.48 16 17 C 0.15 3.43 2.28 29.83 0.07 3.50 16 18 H 0.06 1.50 7.94 -2.38 -0.02 1.48 16 19 O -0.38 -9.62 9.65 -134.97 -1.30 -10.92 16 20 C 0.05 0.94 6.85 71.97 0.49 1.43 16 21 C -0.11 -1.52 6.00 29.85 0.18 -1.35 16 22 C -0.09 -1.48 5.78 -19.84 -0.11 -1.59 16 23 C -0.12 -1.71 9.67 22.32 0.22 -1.49 16 24 C -0.12 -1.54 10.05 22.23 0.22 -1.32 16 25 C -0.13 -1.82 10.05 22.23 0.22 -1.60 16 26 C -0.12 -2.01 9.08 22.32 0.20 -1.80 16 27 C -0.13 -2.51 5.46 -19.86 -0.11 -2.62 16 28 C 0.11 2.58 6.37 86.51 0.55 3.13 16 29 C -0.14 -4.35 5.67 30.82 0.17 -4.17 16 30 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.37 19.94 7.80 -92.71 -0.72 19.22 16 32 H 0.05 1.80 8.08 -2.38 -0.02 1.78 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.08 2.45 7.01 -2.39 -0.02 2.43 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.13 2.08 5.86 -2.38 -0.01 2.07 16 38 H 0.12 2.09 7.93 -2.39 -0.02 2.07 16 39 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.05 0.92 8.07 -2.38 -0.02 0.90 16 41 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 44 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 45 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 46 H 0.13 1.89 6.45 -2.91 -0.02 1.88 16 47 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.11 1.80 5.93 -2.39 -0.01 1.78 16 49 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -72.58 393.58 2.33 -70.24 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.22 Total: 33.44 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 5.02 Total: -4.38 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -3.80 Total: -115.57 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -1.14 Total: -31.18 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -72.58 2.33 -70.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997195788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.014 kcal (2) G-P(sol) polarization free energy of solvation -72.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds