Wall clock time and date at job start Wed Apr 1 2020 03:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99732 * 2 1 4 4 H 1.48500 * 109.47302 * 270.00560 * 3 2 1 5 5 H 1.48505 * 109.47016 * 30.00238 * 3 2 1 6 6 H 1.48501 * 109.47251 * 149.99919 * 3 2 1 7 7 C 1.38812 * 120.00746 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00677 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99670 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99962 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.45806 * 204.99725 * 10 9 7 12 12 C 1.53199 * 109.31137 * 178.61236 * 11 10 9 13 13 N 1.46920 * 108.77363 * 54.63580 * 12 11 10 14 14 C 1.34787 * 120.63080 * 126.36735 * 13 12 11 15 15 O 1.21281 * 120.00152 * 185.63525 * 14 13 12 16 16 C 1.50700 * 119.99438 * 5.64145 * 14 13 12 17 17 C 1.50701 * 109.89569 * 280.29824 * 16 14 13 18 18 C 1.38240 * 119.99794 * 301.68598 * 17 16 14 19 19 C 1.38242 * 119.99552 * 179.76577 * 18 17 16 20 20 C 1.38231 * 119.99811 * 0.50838 * 19 18 17 21 21 C 1.38234 * 120.00617 * 359.74249 * 20 19 18 22 22 C 1.38229 * 120.00104 * 121.95900 * 17 16 14 23 23 C 1.54379 * 109.82617 * 159.37216 * 16 14 13 24 24 C 1.55309 * 102.43435 * 261.94045 * 23 16 14 25 25 C 1.54940 * 100.94111 * 325.76455 * 24 23 16 26 26 O 1.43647 * 105.13444 * 36.44520 * 25 24 23 27 27 C 1.46923 * 118.74257 * 306.64237 * 13 12 11 28 28 C 1.52766 * 109.00839 * 53.30948 * 27 13 12 29 29 H 0.96991 * 120.00002 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99986 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.45708 * 324.96916 * 10 9 7 32 32 H 1.08997 * 109.49576 * 58.66118 * 11 10 9 33 33 H 1.08994 * 109.52414 * 298.57986 * 11 10 9 34 34 H 1.09000 * 109.58591 * 294.84653 * 12 11 10 35 35 H 1.09003 * 109.69949 * 174.49232 * 12 11 10 36 36 H 1.07997 * 120.00557 * 359.97438 * 18 17 16 37 37 H 1.07997 * 119.99712 * 180.22890 * 19 18 17 38 38 H 1.08003 * 120.00182 * 179.72689 * 20 19 18 39 39 H 1.08000 * 120.00841 * 179.97438 * 21 20 19 40 40 H 1.08008 * 119.99675 * 0.02562 * 22 17 16 41 41 H 1.08999 * 110.85261 * 143.65046 * 23 16 14 42 42 H 1.09000 * 110.85462 * 20.23034 * 23 16 14 43 43 H 1.09001 * 111.12733 * 83.68646 * 24 23 16 44 44 H 1.09002 * 111.12542 * 207.84466 * 24 23 16 45 45 H 1.09003 * 110.30968 * 155.35872 * 25 24 23 46 46 H 1.09003 * 110.31350 * 277.42784 * 25 24 23 47 47 H 1.09003 * 109.59035 * 173.14592 * 27 13 12 48 48 H 1.09003 * 109.58088 * 293.57222 * 27 13 12 49 49 H 1.08995 * 109.56471 * 185.55710 * 28 27 13 50 50 H 1.08998 * 109.38466 * 65.51731 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3881 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.1807 -4.7522 -0.6103 12 6 1.9624 -6.0694 -0.6404 13 7 2.4420 -6.3658 0.7163 14 6 2.1733 -7.5528 1.2956 15 8 2.4852 -7.7480 2.4513 16 6 1.4855 -8.6374 0.5072 17 6 0.0033 -8.3705 0.4528 18 6 -0.7236 -8.2661 1.6240 19 6 -2.0824 -8.0165 1.5741 20 6 -2.7159 -7.8817 0.3530 21 6 -1.9900 -7.9913 -0.8183 22 6 -0.6303 -8.2357 -0.7683 23 6 1.7468 -10.0091 1.1655 24 6 2.9192 -10.5702 0.3154 25 6 2.5714 -9.9956 -1.0808 26 8 2.0245 -8.6922 -0.8244 27 6 3.2147 -5.3414 1.4320 28 6 2.4238 -4.0345 1.4368 29 1 -0.4850 0.8400 0.0004 30 1 0.3558 -2.3881 0.0002 31 1 2.9687 -3.5503 -0.5905 32 1 0.9016 -4.4715 -1.6258 33 1 0.2815 -4.8765 -0.0070 34 1 2.8126 -5.9744 -1.3159 35 1 1.3122 -6.8747 -0.9823 36 1 -0.2295 -8.3762 2.5779 37 1 -2.6496 -7.9312 2.4891 38 1 -3.7783 -7.6911 0.3139 39 1 -2.4850 -7.8864 -1.7724 40 1 -0.0631 -8.3221 -1.6834 41 1 0.8691 -10.6506 1.0870 42 1 2.0455 -9.8892 2.2069 43 1 3.8778 -10.1903 0.6689 44 1 2.9105 -11.6601 0.3050 45 1 3.4706 -9.9151 -1.6916 46 1 1.8334 -10.6263 -1.5765 47 1 3.3886 -5.6654 2.4581 48 1 4.1691 -5.1859 0.9289 49 1 3.0293 -3.2430 1.8782 50 1 1.5131 -4.1648 2.0214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997209626.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:15 Heat of formation + Delta-G solvation = -34.109811 kcal Electronic energy + Delta-G solvation = -31903.454896 eV Core-core repulsion = 27895.866393 eV Total energy + Delta-G solvation = -4007.588503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.29221 -39.02664 -38.46232 -37.28157 -34.48879 -32.68892 -32.45518 -31.76525 -30.92764 -30.60895 -29.28812 -28.33974 -25.12708 -23.94641 -23.10135 -22.83998 -22.49923 -21.76632 -21.48268 -19.98603 -18.91892 -17.82245 -17.34371 -16.95350 -16.27220 -15.94942 -15.62654 -15.07907 -14.81678 -14.76027 -14.63893 -14.21698 -13.79512 -13.76731 -13.59048 -13.50437 -13.32589 -13.19434 -13.00683 -12.64262 -12.34831 -12.22441 -12.10796 -11.74652 -11.62509 -11.48055 -11.32237 -11.10054 -11.02160 -10.89207 -10.79273 -10.75530 -10.53214 -10.35518 -10.20141 -9.80280 -9.64864 -9.53304 -8.97807 -8.87977 -8.73496 -8.39798 -6.94197 -5.74995 -3.03745 1.18911 1.33304 2.56935 3.11328 3.31714 3.44268 3.49530 3.51117 3.70273 4.19150 4.35116 4.46695 4.60282 4.65600 4.79648 4.88797 4.94377 5.03223 5.10719 5.26215 5.34238 5.37063 5.41242 5.42437 5.45841 5.47746 5.53388 5.58324 5.63174 5.72995 5.79299 5.80894 5.84774 5.85587 5.96041 6.01320 6.14874 6.28406 6.35665 6.38288 6.40023 6.45013 6.51184 6.59069 6.63571 6.71881 6.89015 6.98426 7.10830 7.57187 7.71201 8.20779 8.43469 9.54608 10.12679 10.47637 11.47709 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.003276 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.795353 B = 8544.410700 C = 9511.387848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.180 3.820 11 C -0.139 4.139 12 C 0.112 3.888 13 N -0.587 5.587 14 C 0.524 3.476 15 O -0.545 6.545 16 C 0.139 3.861 17 C -0.095 4.095 18 C -0.104 4.104 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.096 4.096 23 C -0.134 4.134 24 C -0.155 4.155 25 C 0.045 3.955 26 O -0.356 6.356 27 C 0.110 3.890 28 C -0.149 4.149 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.301 -24.944 -1.801 25.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.178 4.178 12 C -0.011 4.011 13 N -0.318 5.318 14 C 0.310 3.690 15 O -0.424 6.424 16 C 0.096 3.904 17 C -0.095 4.095 18 C -0.122 4.122 19 C -0.136 4.136 20 C -0.132 4.132 21 C -0.138 4.138 22 C -0.114 4.114 23 C -0.172 4.172 24 C -0.192 4.192 25 C -0.031 4.031 26 O -0.276 6.276 27 C -0.012 4.012 28 C -0.190 4.190 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.150 0.850 41 H 0.103 0.897 42 H 0.123 0.877 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.083 0.917 47 H 0.102 0.898 48 H 0.082 0.918 49 H 0.093 0.907 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.598 -24.686 -1.361 24.731 hybrid contribution 0.073 0.990 0.109 0.999 sum 0.672 -23.696 -1.252 23.739 Atomic orbital electron populations 1.69661 1.05112 1.25599 1.57769 1.24734 0.95485 0.97642 1.03077 0.86214 0.78674 0.83966 0.77487 1.21752 1.21828 1.20773 1.19245 0.90973 0.84127 1.42567 0.91198 1.42431 1.05775 0.99711 1.88496 1.20167 0.94358 0.86045 0.92496 1.22207 0.99197 0.94331 1.02038 1.21971 0.98871 0.98204 0.82058 1.48040 1.52740 1.14081 1.16924 1.20320 0.78655 0.83145 0.86871 1.90655 1.53988 1.80883 1.16872 1.20948 0.90455 0.95344 0.83649 1.19669 0.92963 1.02585 0.94327 1.20976 0.94328 0.99196 0.97748 1.21102 0.94403 0.99966 0.98081 1.21217 1.00057 0.99336 0.92621 1.21164 0.94097 1.00036 0.98461 1.20997 0.94466 0.98422 0.97500 1.23113 0.99093 0.92837 1.02171 1.23270 0.99294 1.01694 0.94965 1.23488 0.98454 0.84260 0.96924 1.88621 1.77499 1.32221 1.29218 1.21663 0.93981 0.88015 0.97584 1.22570 1.00129 0.94799 1.01493 0.93550 0.78308 0.93494 0.90659 0.92015 0.91572 0.88306 0.85820 0.85873 0.85997 0.85800 0.85010 0.89674 0.87717 0.90154 0.89520 0.89263 0.91718 0.89795 0.91759 0.90741 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.61 9.93 -15.06 -0.15 -6.75 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -18.26 5.12 -53.39 -0.27 -18.53 16 10 C 0.18 3.60 2.73 -67.89 -0.19 3.41 16 11 C -0.14 -2.36 5.55 -26.61 -0.15 -2.51 16 12 C 0.11 1.62 5.45 -3.71 -0.02 1.60 16 13 N -0.59 -9.07 2.98 -173.02 -0.52 -9.58 16 14 C 0.52 7.99 6.27 -10.98 -0.07 7.93 16 15 O -0.55 -9.51 14.89 5.56 0.08 -9.43 16 16 C 0.14 1.68 0.61 -92.20 -0.06 1.62 16 17 C -0.09 -1.15 4.07 -104.62 -0.43 -1.58 16 18 C -0.10 -1.29 9.00 -39.58 -0.36 -1.65 16 19 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 20 C -0.11 -1.21 10.05 -39.59 -0.40 -1.60 16 21 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 22 C -0.10 -1.08 8.19 -39.58 -0.32 -1.40 16 23 C -0.13 -1.35 5.73 -24.78 -0.14 -1.49 16 24 C -0.15 -1.24 7.16 -24.48 -0.18 -1.41 16 25 C 0.04 0.36 7.78 38.18 0.30 0.66 16 26 O -0.36 -3.95 6.57 -35.23 -0.23 -4.18 16 27 C 0.11 1.77 6.41 -3.93 -0.03 1.75 16 28 C -0.15 -2.79 5.64 -26.83 -0.15 -2.94 16 29 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.38 10.36 7.80 -40.82 -0.32 10.05 16 31 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.32 2.98 -51.93 -0.15 1.17 16 36 H 0.12 1.56 8.03 -52.49 -0.42 1.14 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.13 1.36 6.71 -52.48 -0.35 1.01 16 41 H 0.08 0.75 7.84 -51.93 -0.41 0.34 16 42 H 0.10 1.19 6.71 -51.93 -0.35 0.85 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 48 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 50 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 390.52 15.07 5.89 5.89 Total: -1.00 -32.29 390.52 -10.40 -42.69 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -7.83 Total: 11.54 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -3.22 Total: -8.24 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.06 Total: -55.73 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.15 Total: -13.61 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.29 -10.40 -42.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997209626.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.584 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds